Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G02110

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090706: specification of plant organ position0.00E+00
2GO:0017038: protein import0.00E+00
3GO:0031054: pre-miRNA processing0.00E+00
4GO:0090470: shoot organ boundary specification0.00E+00
5GO:0090279: regulation of calcium ion import0.00E+00
6GO:0007037: vacuolar phosphate transport0.00E+00
7GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
8GO:0071474: cellular hyperosmotic response0.00E+00
9GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
10GO:0009647: skotomorphogenesis3.61E-05
11GO:0006021: inositol biosynthetic process6.44E-05
12GO:0010143: cutin biosynthetic process7.46E-05
13GO:0055114: oxidation-reduction process8.46E-05
14GO:0009416: response to light stimulus8.67E-05
15GO:0015995: chlorophyll biosynthetic process9.09E-05
16GO:0010158: abaxial cell fate specification1.01E-04
17GO:0045038: protein import into chloroplast thylakoid membrane1.01E-04
18GO:1902183: regulation of shoot apical meristem development1.01E-04
19GO:0009395: phospholipid catabolic process2.60E-04
20GO:0010450: inflorescence meristem growth3.17E-04
21GO:0051171: regulation of nitrogen compound metabolic process3.17E-04
22GO:0010362: negative regulation of anion channel activity by blue light3.17E-04
23GO:0015969: guanosine tetraphosphate metabolic process3.17E-04
24GO:0031426: polycistronic mRNA processing3.17E-04
25GO:0000481: maturation of 5S rRNA3.17E-04
26GO:0006659: phosphatidylserine biosynthetic process3.17E-04
27GO:0015801: aromatic amino acid transport3.17E-04
28GO:0043686: co-translational protein modification3.17E-04
29GO:0046167: glycerol-3-phosphate biosynthetic process3.17E-04
30GO:1902458: positive regulation of stomatal opening3.17E-04
31GO:0034337: RNA folding3.17E-04
32GO:2000024: regulation of leaf development4.84E-04
33GO:0006096: glycolytic process5.42E-04
34GO:0015804: neutral amino acid transport6.92E-04
35GO:0051262: protein tetramerization6.92E-04
36GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole6.92E-04
37GO:0010115: regulation of abscisic acid biosynthetic process6.92E-04
38GO:0030187: melatonin biosynthetic process6.92E-04
39GO:0007154: cell communication6.92E-04
40GO:1900033: negative regulation of trichome patterning6.92E-04
41GO:0034755: iron ion transmembrane transport6.92E-04
42GO:0006650: glycerophospholipid metabolic process6.92E-04
43GO:0010155: regulation of proton transport6.92E-04
44GO:1903426: regulation of reactive oxygen species biosynthetic process6.92E-04
45GO:0009684: indoleacetic acid biosynthetic process7.70E-04
46GO:0016024: CDP-diacylglycerol biosynthetic process8.79E-04
47GO:0033591: response to L-ascorbic acid1.12E-03
48GO:0010207: photosystem II assembly1.12E-03
49GO:0046168: glycerol-3-phosphate catabolic process1.12E-03
50GO:0010589: leaf proximal/distal pattern formation1.12E-03
51GO:0009405: pathogenesis1.12E-03
52GO:0080055: low-affinity nitrate transport1.12E-03
53GO:0045165: cell fate commitment1.12E-03
54GO:0019853: L-ascorbic acid biosynthetic process1.25E-03
55GO:0006833: water transport1.39E-03
56GO:0009944: polarity specification of adaxial/abaxial axis1.54E-03
57GO:0010239: chloroplast mRNA processing1.61E-03
58GO:0006631: fatty acid metabolic process1.61E-03
59GO:0006072: glycerol-3-phosphate metabolic process1.61E-03
60GO:0010255: glucose mediated signaling pathway1.61E-03
61GO:0046739: transport of virus in multicellular host1.61E-03
62GO:0006168: adenine salvage1.61E-03
63GO:0006164: purine nucleotide biosynthetic process1.61E-03
64GO:0009963: positive regulation of flavonoid biosynthetic process1.61E-03
65GO:0010371: regulation of gibberellin biosynthetic process1.61E-03
66GO:0006166: purine ribonucleoside salvage1.61E-03
67GO:0009640: photomorphogenesis1.78E-03
68GO:0003333: amino acid transmembrane transport1.86E-03
69GO:0048511: rhythmic process1.86E-03
70GO:0010431: seed maturation1.86E-03
71GO:0006629: lipid metabolic process2.00E-03
72GO:0019464: glycine decarboxylation via glycine cleavage system2.16E-03
73GO:0009765: photosynthesis, light harvesting2.16E-03
74GO:0035279: mRNA cleavage involved in gene silencing by miRNA2.16E-03
75GO:0006546: glycine catabolic process2.16E-03
76GO:0009649: entrainment of circadian clock2.16E-03
77GO:0008295: spermidine biosynthetic process2.16E-03
78GO:0032366: intracellular sterol transport2.16E-03
79GO:0048629: trichome patterning2.16E-03
80GO:0010109: regulation of photosynthesis2.16E-03
81GO:0016123: xanthophyll biosynthetic process2.76E-03
82GO:0044209: AMP salvage2.76E-03
83GO:0000304: response to singlet oxygen2.76E-03
84GO:0046283: anthocyanin-containing compound metabolic process2.76E-03
85GO:0006564: L-serine biosynthetic process2.76E-03
86GO:0016120: carotene biosynthetic process2.76E-03
87GO:0009904: chloroplast accumulation movement2.76E-03
88GO:0031365: N-terminal protein amino acid modification2.76E-03
89GO:0034220: ion transmembrane transport2.83E-03
90GO:0045489: pectin biosynthetic process3.05E-03
91GO:0010154: fruit development3.05E-03
92GO:0007018: microtubule-based movement3.28E-03
93GO:0010264: myo-inositol hexakisphosphate biosynthetic process3.40E-03
94GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.40E-03
95GO:0006655: phosphatidylglycerol biosynthetic process3.40E-03
96GO:0048831: regulation of shoot system development3.40E-03
97GO:0000741: karyogamy3.40E-03
98GO:0046855: inositol phosphate dephosphorylation3.40E-03
99GO:0009791: post-embryonic development3.51E-03
100GO:0008654: phospholipid biosynthetic process3.51E-03
101GO:0010583: response to cyclopentenone4.02E-03
102GO:0016032: viral process4.02E-03
103GO:0009648: photoperiodism4.10E-03
104GO:0009955: adaxial/abaxial pattern specification4.10E-03
105GO:0048280: vesicle fusion with Golgi apparatus4.10E-03
106GO:0009903: chloroplast avoidance movement4.10E-03
107GO:0030488: tRNA methylation4.10E-03
108GO:1901259: chloroplast rRNA processing4.10E-03
109GO:0006400: tRNA modification4.84E-03
110GO:0035196: production of miRNAs involved in gene silencing by miRNA4.84E-03
111GO:0046686: response to cadmium ion5.02E-03
112GO:0007155: cell adhesion5.62E-03
113GO:0006605: protein targeting5.62E-03
114GO:0010078: maintenance of root meristem identity5.62E-03
115GO:0032508: DNA duplex unwinding5.62E-03
116GO:2000070: regulation of response to water deprivation5.62E-03
117GO:0016559: peroxisome fission5.62E-03
118GO:0015996: chlorophyll catabolic process6.44E-03
119GO:0007186: G-protein coupled receptor signaling pathway6.44E-03
120GO:0032544: plastid translation6.44E-03
121GO:0043562: cellular response to nitrogen levels6.44E-03
122GO:0010093: specification of floral organ identity6.44E-03
123GO:0006633: fatty acid biosynthetic process7.28E-03
124GO:0090305: nucleic acid phosphodiester bond hydrolysis7.30E-03
125GO:0006098: pentose-phosphate shunt7.30E-03
126GO:0010206: photosystem II repair7.30E-03
127GO:0006783: heme biosynthetic process7.30E-03
128GO:0048507: meristem development7.30E-03
129GO:0006189: 'de novo' IMP biosynthetic process7.30E-03
130GO:0016042: lipid catabolic process7.69E-03
131GO:0006811: ion transport7.83E-03
132GO:0009638: phototropism8.21E-03
133GO:0010267: production of ta-siRNAs involved in RNA interference8.21E-03
134GO:0007623: circadian rhythm8.21E-03
135GO:1900865: chloroplast RNA modification8.21E-03
136GO:0010380: regulation of chlorophyll biosynthetic process8.21E-03
137GO:0005982: starch metabolic process8.21E-03
138GO:0010119: regulation of stomatal movement8.22E-03
139GO:0007568: aging8.22E-03
140GO:0006865: amino acid transport8.61E-03
141GO:0006896: Golgi to vacuole transport9.15E-03
142GO:0006535: cysteine biosynthetic process from serine9.15E-03
143GO:0006782: protoporphyrinogen IX biosynthetic process9.15E-03
144GO:0009641: shade avoidance9.15E-03
145GO:0019684: photosynthesis, light reaction1.01E-02
146GO:0009089: lysine biosynthetic process via diaminopimelate1.01E-02
147GO:0008285: negative regulation of cell proliferation1.01E-02
148GO:0006879: cellular iron ion homeostasis1.01E-02
149GO:0000272: polysaccharide catabolic process1.01E-02
150GO:0018119: peptidyl-cysteine S-nitrosylation1.01E-02
151GO:0006790: sulfur compound metabolic process1.11E-02
152GO:0045037: protein import into chloroplast stroma1.11E-02
153GO:0009767: photosynthetic electron transport chain1.22E-02
154GO:0010588: cotyledon vascular tissue pattern formation1.22E-02
155GO:0009785: blue light signaling pathway1.22E-02
156GO:0006006: glucose metabolic process1.22E-02
157GO:0030036: actin cytoskeleton organization1.22E-02
158GO:0009718: anthocyanin-containing compound biosynthetic process1.22E-02
159GO:0006094: gluconeogenesis1.22E-02
160GO:0048467: gynoecium development1.33E-02
161GO:0006541: glutamine metabolic process1.33E-02
162GO:0010020: chloroplast fission1.33E-02
163GO:0009933: meristem structural organization1.33E-02
164GO:0019253: reductive pentose-phosphate cycle1.33E-02
165GO:0042343: indole glucosinolate metabolic process1.44E-02
166GO:0046854: phosphatidylinositol phosphorylation1.44E-02
167GO:0000162: tryptophan biosynthetic process1.56E-02
168GO:0010025: wax biosynthetic process1.56E-02
169GO:0042753: positive regulation of circadian rhythm1.56E-02
170GO:0009585: red, far-red light phototransduction1.57E-02
171GO:0019344: cysteine biosynthetic process1.67E-02
172GO:0000027: ribosomal large subunit assembly1.67E-02
173GO:0010187: negative regulation of seed germination1.67E-02
174GO:0008299: isoprenoid biosynthetic process1.80E-02
175GO:0006418: tRNA aminoacylation for protein translation1.80E-02
176GO:0010073: meristem maintenance1.80E-02
177GO:0031408: oxylipin biosynthetic process1.92E-02
178GO:0098542: defense response to other organism1.92E-02
179GO:0044550: secondary metabolite biosynthetic process2.09E-02
180GO:0010227: floral organ abscission2.18E-02
181GO:0006012: galactose metabolic process2.18E-02
182GO:0019722: calcium-mediated signaling2.31E-02
183GO:0016117: carotenoid biosynthetic process2.45E-02
184GO:0042147: retrograde transport, endosome to Golgi2.45E-02
185GO:0000271: polysaccharide biosynthetic process2.59E-02
186GO:0080022: primary root development2.59E-02
187GO:0010087: phloem or xylem histogenesis2.59E-02
188GO:0009958: positive gravitropism2.73E-02
189GO:0006520: cellular amino acid metabolic process2.73E-02
190GO:0010197: polar nucleus fusion2.73E-02
191GO:0010305: leaf vascular tissue pattern formation2.73E-02
192GO:0010182: sugar mediated signaling pathway2.73E-02
193GO:0009646: response to absence of light2.88E-02
194GO:0006623: protein targeting to vacuole3.02E-02
195GO:0010183: pollen tube guidance3.02E-02
196GO:0048825: cotyledon development3.02E-02
197GO:0009851: auxin biosynthetic process3.02E-02
198GO:0006891: intra-Golgi vesicle-mediated transport3.17E-02
199GO:0030163: protein catabolic process3.48E-02
200GO:0010090: trichome morphogenesis3.48E-02
201GO:0006413: translational initiation3.61E-02
202GO:0005975: carbohydrate metabolic process3.74E-02
203GO:0007267: cell-cell signaling3.80E-02
204GO:0045490: pectin catabolic process3.87E-02
205GO:0016126: sterol biosynthetic process4.12E-02
206GO:0010027: thylakoid membrane organization4.12E-02
207GO:0009627: systemic acquired resistance4.46E-02
208GO:0010468: regulation of gene expression4.61E-02
209GO:0048573: photoperiodism, flowering4.63E-02
210GO:0006888: ER to Golgi vesicle-mediated transport4.63E-02
211GO:0016311: dephosphorylation4.80E-02
212GO:0048481: plant ovule development4.98E-02
213GO:0018298: protein-chromophore linkage4.98E-02
RankGO TermAdjusted P value
1GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
2GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity0.00E+00
3GO:0004059: aralkylamine N-acetyltransferase activity0.00E+00
4GO:0010349: L-galactose dehydrogenase activity0.00E+00
5GO:0043864: indoleacetamide hydrolase activity0.00E+00
6GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
7GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
8GO:0050613: delta14-sterol reductase activity0.00E+00
9GO:0045435: lycopene epsilon cyclase activity0.00E+00
10GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
11GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity0.00E+00
12GO:0004822: isoleucine-tRNA ligase activity0.00E+00
13GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
14GO:0036033: mediator complex binding0.00E+00
15GO:0016788: hydrolase activity, acting on ester bonds1.33E-04
16GO:0000293: ferric-chelate reductase activity1.47E-04
17GO:0004366: glycerol-3-phosphate O-acyltransferase activity1.47E-04
18GO:0003993: acid phosphatase activity1.81E-04
19GO:0005227: calcium activated cation channel activity3.17E-04
20GO:0004853: uroporphyrinogen decarboxylase activity3.17E-04
21GO:0042586: peptide deformylase activity3.17E-04
22GO:0004328: formamidase activity3.17E-04
23GO:0031957: very long-chain fatty acid-CoA ligase activity3.17E-04
24GO:0010347: L-galactose-1-phosphate phosphatase activity3.17E-04
25GO:0016491: oxidoreductase activity3.52E-04
26GO:0004743: pyruvate kinase activity5.72E-04
27GO:0030955: potassium ion binding5.72E-04
28GO:0004617: phosphoglycerate dehydrogenase activity6.92E-04
29GO:0004766: spermidine synthase activity6.92E-04
30GO:0052832: inositol monophosphate 3-phosphatase activity6.92E-04
31GO:0015173: aromatic amino acid transmembrane transporter activity6.92E-04
32GO:0080097: L-tryptophan:pyruvate aminotransferase activity6.92E-04
33GO:0034432: bis(5'-adenosyl)-pentaphosphatase activity6.92E-04
34GO:0016630: protochlorophyllide reductase activity6.92E-04
35GO:0004081: bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity6.92E-04
36GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase6.92E-04
37GO:0008934: inositol monophosphate 1-phosphatase activity6.92E-04
38GO:0052833: inositol monophosphate 4-phosphatase activity6.92E-04
39GO:0008728: GTP diphosphokinase activity6.92E-04
40GO:0004512: inositol-3-phosphate synthase activity6.92E-04
41GO:0015172: acidic amino acid transmembrane transporter activity6.92E-04
42GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity6.92E-04
43GO:0048531: beta-1,3-galactosyltransferase activity6.92E-04
44GO:0050017: L-3-cyanoalanine synthase activity6.92E-04
45GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity6.92E-04
46GO:0047372: acylglycerol lipase activity7.70E-04
47GO:0015462: ATPase-coupled protein transmembrane transporter activity1.12E-03
48GO:0005504: fatty acid binding1.12E-03
49GO:0003913: DNA photolyase activity1.12E-03
50GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.12E-03
51GO:0002161: aminoacyl-tRNA editing activity1.12E-03
52GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.12E-03
53GO:0004148: dihydrolipoyl dehydrogenase activity1.12E-03
54GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity1.12E-03
55GO:0070402: NADPH binding1.12E-03
56GO:0004049: anthranilate synthase activity1.12E-03
57GO:0080054: low-affinity nitrate transmembrane transporter activity1.12E-03
58GO:0004375: glycine dehydrogenase (decarboxylating) activity1.61E-03
59GO:0015175: neutral amino acid transmembrane transporter activity1.61E-03
60GO:0048027: mRNA 5'-UTR binding1.61E-03
61GO:0003999: adenine phosphoribosyltransferase activity1.61E-03
62GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides1.61E-03
63GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.61E-03
64GO:0009882: blue light photoreceptor activity1.61E-03
65GO:0016851: magnesium chelatase activity1.61E-03
66GO:0035198: miRNA binding1.61E-03
67GO:0008017: microtubule binding1.76E-03
68GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds2.16E-03
69GO:0045430: chalcone isomerase activity2.16E-03
70GO:0030570: pectate lyase activity2.22E-03
71GO:0042802: identical protein binding2.37E-03
72GO:0016846: carbon-sulfur lyase activity2.76E-03
73GO:0005275: amine transmembrane transporter activity2.76E-03
74GO:0004040: amidase activity2.76E-03
75GO:0003777: microtubule motor activity2.97E-03
76GO:0004332: fructose-bisphosphate aldolase activity3.40E-03
77GO:0102229: amylopectin maltohydrolase activity3.40E-03
78GO:0042578: phosphoric ester hydrolase activity3.40E-03
79GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.40E-03
80GO:2001070: starch binding3.40E-03
81GO:0004124: cysteine synthase activity4.10E-03
82GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.10E-03
83GO:0102391: decanoate--CoA ligase activity4.10E-03
84GO:0016161: beta-amylase activity4.10E-03
85GO:0004723: calcium-dependent protein serine/threonine phosphatase activity4.10E-03
86GO:0005261: cation channel activity4.10E-03
87GO:0009927: histidine phosphotransfer kinase activity4.10E-03
88GO:0004467: long-chain fatty acid-CoA ligase activity4.84E-03
89GO:0052689: carboxylic ester hydrolase activity5.18E-03
90GO:0015250: water channel activity5.44E-03
91GO:0043022: ribosome binding5.62E-03
92GO:0004033: aldo-keto reductase (NADP) activity5.62E-03
93GO:0008173: RNA methyltransferase activity6.44E-03
94GO:0005381: iron ion transmembrane transporter activity8.21E-03
95GO:0000049: tRNA binding1.11E-02
96GO:0003725: double-stranded RNA binding1.22E-02
97GO:0004565: beta-galactosidase activity1.22E-02
98GO:0008081: phosphoric diester hydrolase activity1.22E-02
99GO:0000155: phosphorelay sensor kinase activity1.22E-02
100GO:0035091: phosphatidylinositol binding1.26E-02
101GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.36E-02
102GO:0051287: NAD binding1.41E-02
103GO:0008146: sulfotransferase activity1.44E-02
104GO:0005528: FK506 binding1.67E-02
105GO:0051087: chaperone binding1.80E-02
106GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.05E-02
107GO:0004812: aminoacyl-tRNA ligase activity2.45E-02
108GO:0046872: metal ion binding2.48E-02
109GO:0004871: signal transducer activity2.50E-02
110GO:0042803: protein homodimerization activity2.50E-02
111GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen2.60E-02
112GO:0008080: N-acetyltransferase activity2.73E-02
113GO:0001085: RNA polymerase II transcription factor binding2.73E-02
114GO:0019843: rRNA binding2.81E-02
115GO:0016853: isomerase activity2.88E-02
116GO:0010181: FMN binding2.88E-02
117GO:0016829: lyase activity3.04E-02
118GO:0048038: quinone binding3.17E-02
119GO:0003723: RNA binding3.20E-02
120GO:0004518: nuclease activity3.32E-02
121GO:0003729: mRNA binding3.62E-02
122GO:0016791: phosphatase activity3.64E-02
123GO:0016722: oxidoreductase activity, oxidizing metal ions3.80E-02
124GO:0005200: structural constituent of cytoskeleton3.80E-02
125GO:0016597: amino acid binding3.96E-02
126GO:0005525: GTP binding3.96E-02
127GO:0003743: translation initiation factor activity4.51E-02
128GO:0030247: polysaccharide binding4.63E-02
129GO:0008236: serine-type peptidase activity4.80E-02
<
Gene type



Gene DE type