GO Enrichment Analysis of Co-expressed Genes with
AT3G02060
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0048263: determination of dorsal identity | 0.00E+00 |
| 2 | GO:0060966: regulation of gene silencing by RNA | 0.00E+00 |
| 3 | GO:0070829: heterochromatin maintenance | 0.00E+00 |
| 4 | GO:0071360: cellular response to exogenous dsRNA | 0.00E+00 |
| 5 | GO:0031081: nuclear pore distribution | 0.00E+00 |
| 6 | GO:1900370: positive regulation of RNA interference | 0.00E+00 |
| 7 | GO:0035563: positive regulation of chromatin binding | 0.00E+00 |
| 8 | GO:0006390: transcription from mitochondrial promoter | 3.50E-05 |
| 9 | GO:0006264: mitochondrial DNA replication | 3.50E-05 |
| 10 | GO:0033259: plastid DNA replication | 3.50E-05 |
| 11 | GO:1900368: regulation of RNA interference | 3.50E-05 |
| 12 | GO:0000972: transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery | 3.50E-05 |
| 13 | GO:1900111: positive regulation of histone H3-K9 dimethylation | 8.78E-05 |
| 14 | GO:0032776: DNA methylation on cytosine | 1.52E-04 |
| 15 | GO:0060968: regulation of gene silencing | 1.52E-04 |
| 16 | GO:0060964: regulation of gene silencing by miRNA | 2.25E-04 |
| 17 | GO:0009855: determination of bilateral symmetry | 2.25E-04 |
| 18 | GO:0016558: protein import into peroxisome matrix | 3.89E-04 |
| 19 | GO:0006405: RNA export from nucleus | 3.89E-04 |
| 20 | GO:0010014: meristem initiation | 5.70E-04 |
| 21 | GO:0010019: chloroplast-nucleus signaling pathway | 5.70E-04 |
| 22 | GO:0080060: integument development | 5.70E-04 |
| 23 | GO:0010098: suspensor development | 6.66E-04 |
| 24 | GO:1900056: negative regulation of leaf senescence | 6.66E-04 |
| 25 | GO:0009965: leaf morphogenesis | 6.92E-04 |
| 26 | GO:0005978: glycogen biosynthetic process | 7.68E-04 |
| 27 | GO:0042255: ribosome assembly | 7.68E-04 |
| 28 | GO:0007389: pattern specification process | 8.71E-04 |
| 29 | GO:0030422: production of siRNA involved in RNA interference | 1.20E-03 |
| 30 | GO:0006949: syncytium formation | 1.20E-03 |
| 31 | GO:0006259: DNA metabolic process | 1.20E-03 |
| 32 | GO:0006325: chromatin organization | 1.20E-03 |
| 33 | GO:0006265: DNA topological change | 1.32E-03 |
| 34 | GO:0010075: regulation of meristem growth | 1.57E-03 |
| 35 | GO:0009887: animal organ morphogenesis | 1.70E-03 |
| 36 | GO:0006302: double-strand break repair | 1.70E-03 |
| 37 | GO:0006541: glutamine metabolic process | 1.70E-03 |
| 38 | GO:0010020: chloroplast fission | 1.70E-03 |
| 39 | GO:0080188: RNA-directed DNA methylation | 1.84E-03 |
| 40 | GO:0009451: RNA modification | 1.99E-03 |
| 41 | GO:0000027: ribosomal large subunit assembly | 2.12E-03 |
| 42 | GO:0030150: protein import into mitochondrial matrix | 2.12E-03 |
| 43 | GO:0010073: meristem maintenance | 2.26E-03 |
| 44 | GO:0008380: RNA splicing | 2.32E-03 |
| 45 | GO:0006306: DNA methylation | 2.41E-03 |
| 46 | GO:0030245: cellulose catabolic process | 2.56E-03 |
| 47 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 2.71E-03 |
| 48 | GO:0009658: chloroplast organization | 2.99E-03 |
| 49 | GO:0010501: RNA secondary structure unwinding | 3.20E-03 |
| 50 | GO:0010087: phloem or xylem histogenesis | 3.20E-03 |
| 51 | GO:0006606: protein import into nucleus | 3.20E-03 |
| 52 | GO:0007059: chromosome segregation | 3.53E-03 |
| 53 | GO:0019252: starch biosynthetic process | 3.70E-03 |
| 54 | GO:0009791: post-embryonic development | 3.70E-03 |
| 55 | GO:0006635: fatty acid beta-oxidation | 3.88E-03 |
| 56 | GO:0032502: developmental process | 4.06E-03 |
| 57 | GO:0006464: cellular protein modification process | 4.42E-03 |
| 58 | GO:0009828: plant-type cell wall loosening | 4.42E-03 |
| 59 | GO:0009627: systemic acquired resistance | 5.38E-03 |
| 60 | GO:0016311: dephosphorylation | 5.78E-03 |
| 61 | GO:0008283: cell proliferation | 8.41E-03 |
| 62 | GO:0006260: DNA replication | 9.61E-03 |
| 63 | GO:0009664: plant-type cell wall organization | 9.86E-03 |
| 64 | GO:0009793: embryo development ending in seed dormancy | 9.90E-03 |
| 65 | GO:0006364: rRNA processing | 1.04E-02 |
| 66 | GO:0006096: glycolytic process | 1.17E-02 |
| 67 | GO:0009624: response to nematode | 1.33E-02 |
| 68 | GO:0006396: RNA processing | 1.36E-02 |
| 69 | GO:0071555: cell wall organization | 1.96E-02 |
| 70 | GO:0006470: protein dephosphorylation | 2.15E-02 |
| 71 | GO:0009826: unidimensional cell growth | 2.60E-02 |
| 72 | GO:0042254: ribosome biogenesis | 2.71E-02 |
| 73 | GO:0006412: translation | 2.76E-02 |
| 74 | GO:0006970: response to osmotic stress | 2.82E-02 |
| 75 | GO:0005975: carbohydrate metabolic process | 2.97E-02 |
| 76 | GO:0007165: signal transduction | 4.07E-02 |
| 77 | GO:0006281: DNA repair | 4.11E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004835: tubulin-tyrosine ligase activity | 0.00E+00 |
| 2 | GO:0003922: GMP synthase (glutamine-hydrolyzing) activity | 0.00E+00 |
| 3 | GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding | 0.00E+00 |
| 4 | GO:0034335: DNA supercoiling activity | 3.50E-05 |
| 5 | GO:0003844: 1,4-alpha-glucan branching enzyme activity | 8.78E-05 |
| 6 | GO:0043169: cation binding | 1.52E-04 |
| 7 | GO:0003723: RNA binding | 1.89E-04 |
| 8 | GO:0008097: 5S rRNA binding | 2.25E-04 |
| 9 | GO:0003916: DNA topoisomerase activity | 2.25E-04 |
| 10 | GO:0008409: 5'-3' exonuclease activity | 3.05E-04 |
| 11 | GO:0004556: alpha-amylase activity | 4.78E-04 |
| 12 | GO:0016462: pyrophosphatase activity | 4.78E-04 |
| 13 | GO:0017056: structural constituent of nuclear pore | 7.68E-04 |
| 14 | GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity | 8.71E-04 |
| 15 | GO:0005487: nucleocytoplasmic transporter activity | 1.09E-03 |
| 16 | GO:0030955: potassium ion binding | 1.09E-03 |
| 17 | GO:0004743: pyruvate kinase activity | 1.09E-03 |
| 18 | GO:0009982: pseudouridine synthase activity | 1.57E-03 |
| 19 | GO:0000175: 3'-5'-exoribonuclease activity | 1.57E-03 |
| 20 | GO:0008266: poly(U) RNA binding | 1.70E-03 |
| 21 | GO:0003887: DNA-directed DNA polymerase activity | 1.97E-03 |
| 22 | GO:0008408: 3'-5' exonuclease activity | 2.41E-03 |
| 23 | GO:0008810: cellulase activity | 2.71E-03 |
| 24 | GO:0003727: single-stranded RNA binding | 2.87E-03 |
| 25 | GO:0004527: exonuclease activity | 3.36E-03 |
| 26 | GO:0016791: phosphatase activity | 4.42E-03 |
| 27 | GO:0004722: protein serine/threonine phosphatase activity | 4.84E-03 |
| 28 | GO:0004004: ATP-dependent RNA helicase activity | 5.58E-03 |
| 29 | GO:0004519: endonuclease activity | 5.91E-03 |
| 30 | GO:0003993: acid phosphatase activity | 7.27E-03 |
| 31 | GO:0003735: structural constituent of ribosome | 8.17E-03 |
| 32 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.04E-02 |
| 33 | GO:0004650: polygalacturonase activity | 1.25E-02 |
| 34 | GO:0016874: ligase activity | 1.27E-02 |
| 35 | GO:0008026: ATP-dependent helicase activity | 1.38E-02 |
| 36 | GO:0004386: helicase activity | 1.41E-02 |
| 37 | GO:0019843: rRNA binding | 1.56E-02 |
| 38 | GO:0016829: lyase activity | 1.65E-02 |
| 39 | GO:0003677: DNA binding | 1.94E-02 |
| 40 | GO:0000287: magnesium ion binding | 2.64E-02 |