Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G02050

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070125: mitochondrial translational elongation0.00E+00
2GO:0006429: leucyl-tRNA aminoacylation0.00E+00
3GO:1905421: regulation of plant organ morphogenesis0.00E+00
4GO:0030155: regulation of cell adhesion0.00E+00
5GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
6GO:0017038: protein import0.00E+00
7GO:0046460: neutral lipid biosynthetic process0.00E+00
8GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)0.00E+00
9GO:0090071: negative regulation of ribosome biogenesis0.00E+00
10GO:0044249: cellular biosynthetic process0.00E+00
11GO:0031116: positive regulation of microtubule polymerization0.00E+00
12GO:0006167: AMP biosynthetic process0.00E+00
13GO:0042407: cristae formation0.00E+00
14GO:0042817: pyridoxal metabolic process0.00E+00
15GO:0090042: tubulin deacetylation0.00E+00
16GO:0018023: peptidyl-lysine trimethylation0.00E+00
17GO:0006399: tRNA metabolic process0.00E+00
18GO:0046040: IMP metabolic process0.00E+00
19GO:0009658: chloroplast organization9.05E-11
20GO:0006353: DNA-templated transcription, termination1.38E-05
21GO:0009657: plastid organization1.98E-05
22GO:0009793: embryo development ending in seed dormancy3.25E-05
23GO:0010020: chloroplast fission1.09E-04
24GO:0045038: protein import into chloroplast thylakoid membrane1.34E-04
25GO:0006400: tRNA modification3.37E-04
26GO:1902458: positive regulation of stomatal opening3.75E-04
27GO:0006747: FAD biosynthetic process3.75E-04
28GO:0000023: maltose metabolic process3.75E-04
29GO:0010729: positive regulation of hydrogen peroxide biosynthetic process3.75E-04
30GO:0006419: alanyl-tRNA aminoacylation3.75E-04
31GO:0000476: maturation of 4.5S rRNA3.75E-04
32GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process3.75E-04
33GO:0000967: rRNA 5'-end processing3.75E-04
34GO:0006438: valyl-tRNA aminoacylation3.75E-04
35GO:0043266: regulation of potassium ion transport3.75E-04
36GO:0042547: cell wall modification involved in multidimensional cell growth3.75E-04
37GO:0042371: vitamin K biosynthetic process3.75E-04
38GO:2000021: regulation of ion homeostasis3.75E-04
39GO:0071482: cellular response to light stimulus5.17E-04
40GO:1903426: regulation of reactive oxygen species biosynthetic process8.15E-04
41GO:0034470: ncRNA processing8.15E-04
42GO:0010198: synergid death8.15E-04
43GO:0006739: NADP metabolic process8.15E-04
44GO:0009629: response to gravity8.15E-04
45GO:0060359: response to ammonium ion8.15E-04
46GO:1900871: chloroplast mRNA modification8.15E-04
47GO:0007154: cell communication8.15E-04
48GO:0018026: peptidyl-lysine monomethylation8.15E-04
49GO:0034755: iron ion transmembrane transport8.15E-04
50GO:0006423: cysteinyl-tRNA aminoacylation8.15E-04
51GO:0006435: threonyl-tRNA aminoacylation8.15E-04
52GO:0044208: 'de novo' AMP biosynthetic process8.15E-04
53GO:0009220: pyrimidine ribonucleotide biosynthetic process8.15E-04
54GO:0001682: tRNA 5'-leader removal8.15E-04
55GO:0006782: protoporphyrinogen IX biosynthetic process8.52E-04
56GO:0009089: lysine biosynthetic process via diaminopimelate9.79E-04
57GO:0006352: DNA-templated transcription, initiation9.79E-04
58GO:0005983: starch catabolic process1.12E-03
59GO:0045037: protein import into chloroplast stroma1.12E-03
60GO:0015995: chlorophyll biosynthetic process1.16E-03
61GO:0048281: inflorescence morphogenesis1.32E-03
62GO:0019419: sulfate reduction1.32E-03
63GO:0006954: inflammatory response1.32E-03
64GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.32E-03
65GO:0001578: microtubule bundle formation1.32E-03
66GO:0045493: xylan catabolic process1.32E-03
67GO:0043157: response to cation stress1.32E-03
68GO:0030261: chromosome condensation1.32E-03
69GO:0005977: glycogen metabolic process1.32E-03
70GO:0071732: cellular response to nitric oxide1.60E-03
71GO:0090351: seedling development1.60E-03
72GO:0009790: embryo development1.88E-03
73GO:0009102: biotin biosynthetic process1.91E-03
74GO:0009152: purine ribonucleotide biosynthetic process1.91E-03
75GO:0010239: chloroplast mRNA processing1.91E-03
76GO:0009226: nucleotide-sugar biosynthetic process1.91E-03
77GO:0008615: pyridoxine biosynthetic process1.91E-03
78GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity1.91E-03
79GO:0006164: purine nucleotide biosynthetic process1.91E-03
80GO:0010148: transpiration1.91E-03
81GO:0043572: plastid fission1.91E-03
82GO:0016556: mRNA modification1.91E-03
83GO:2001141: regulation of RNA biosynthetic process1.91E-03
84GO:0006418: tRNA aminoacylation for protein translation2.18E-03
85GO:0006508: proteolysis2.43E-03
86GO:0010109: regulation of photosynthesis2.56E-03
87GO:0051322: anaphase2.56E-03
88GO:0022622: root system development2.56E-03
89GO:0007020: microtubule nucleation2.56E-03
90GO:0071483: cellular response to blue light2.56E-03
91GO:0006734: NADH metabolic process2.56E-03
92GO:0044205: 'de novo' UMP biosynthetic process2.56E-03
93GO:0010021: amylopectin biosynthetic process2.56E-03
94GO:0006730: one-carbon metabolic process2.62E-03
95GO:0071369: cellular response to ethylene stimulus2.86E-03
96GO:0046785: microtubule polymerization3.28E-03
97GO:0032543: mitochondrial translation3.28E-03
98GO:0010236: plastoquinone biosynthetic process3.28E-03
99GO:0008033: tRNA processing3.64E-03
100GO:0009959: negative gravitropism4.05E-03
101GO:0042793: transcription from plastid promoter4.05E-03
102GO:0016554: cytidine to uridine editing4.05E-03
103GO:0010190: cytochrome b6f complex assembly4.05E-03
104GO:0032973: amino acid export4.05E-03
105GO:0009648: photoperiodism4.88E-03
106GO:0019509: L-methionine salvage from methylthioadenosine4.88E-03
107GO:0042372: phylloquinone biosynthetic process4.88E-03
108GO:0006458: 'de novo' protein folding4.88E-03
109GO:0017148: negative regulation of translation4.88E-03
110GO:0042026: protein refolding4.88E-03
111GO:0034389: lipid particle organization4.88E-03
112GO:0030488: tRNA methylation4.88E-03
113GO:1901259: chloroplast rRNA processing4.88E-03
114GO:0009630: gravitropism5.18E-03
115GO:0071281: cellular response to iron ion5.52E-03
116GO:0048528: post-embryonic root development5.77E-03
117GO:0009772: photosynthetic electron transport in photosystem II5.77E-03
118GO:0043090: amino acid import5.77E-03
119GO:0070370: cellular heat acclimation5.77E-03
120GO:0006614: SRP-dependent cotranslational protein targeting to membrane5.77E-03
121GO:0010196: nonphotochemical quenching5.77E-03
122GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process5.77E-03
123GO:0010103: stomatal complex morphogenesis5.77E-03
124GO:0032880: regulation of protein localization5.77E-03
125GO:0052543: callose deposition in cell wall6.70E-03
126GO:0048564: photosystem I assembly6.70E-03
127GO:0006605: protein targeting6.70E-03
128GO:0009704: de-etiolation6.70E-03
129GO:0042255: ribosome assembly6.70E-03
130GO:2000070: regulation of response to water deprivation6.70E-03
131GO:0070413: trehalose metabolism in response to stress6.70E-03
132GO:0000105: histidine biosynthetic process6.70E-03
133GO:0009231: riboflavin biosynthetic process6.70E-03
134GO:0010027: thylakoid membrane organization7.02E-03
135GO:0022900: electron transport chain7.69E-03
136GO:0001558: regulation of cell growth7.69E-03
137GO:0006526: arginine biosynthetic process7.69E-03
138GO:0009627: systemic acquired resistance7.84E-03
139GO:0010206: photosystem II repair8.73E-03
140GO:0080144: amino acid homeostasis8.73E-03
141GO:0006098: pentose-phosphate shunt8.73E-03
142GO:0019432: triglyceride biosynthetic process8.73E-03
143GO:0006783: heme biosynthetic process8.73E-03
144GO:0043067: regulation of programmed cell death9.82E-03
145GO:0006779: porphyrin-containing compound biosynthetic process9.82E-03
146GO:0042761: very long-chain fatty acid biosynthetic process9.82E-03
147GO:1900865: chloroplast RNA modification9.82E-03
148GO:0005982: starch metabolic process9.82E-03
149GO:0006413: translational initiation1.04E-02
150GO:0006949: syncytium formation1.10E-02
151GO:0000103: sulfate assimilation1.10E-02
152GO:0010015: root morphogenesis1.21E-02
153GO:0019684: photosynthesis, light reaction1.21E-02
154GO:0009073: aromatic amino acid family biosynthetic process1.21E-02
155GO:1903507: negative regulation of nucleic acid-templated transcription1.21E-02
156GO:0006879: cellular iron ion homeostasis1.21E-02
157GO:0018119: peptidyl-cysteine S-nitrosylation1.21E-02
158GO:0009725: response to hormone1.46E-02
159GO:0006094: gluconeogenesis1.46E-02
160GO:2000012: regulation of auxin polar transport1.46E-02
161GO:0010114: response to red light1.51E-02
162GO:0010207: photosystem II assembly1.59E-02
163GO:0006855: drug transmembrane transport1.76E-02
164GO:0006071: glycerol metabolic process1.87E-02
165GO:0000162: tryptophan biosynthetic process1.87E-02
166GO:0010025: wax biosynthetic process1.87E-02
167GO:0009664: plant-type cell wall organization1.89E-02
168GO:0019344: cysteine biosynthetic process2.01E-02
169GO:0009116: nucleoside metabolic process2.01E-02
170GO:0009944: polarity specification of adaxial/abaxial axis2.01E-02
171GO:0005992: trehalose biosynthetic process2.01E-02
172GO:0006364: rRNA processing2.03E-02
173GO:0051302: regulation of cell division2.15E-02
174GO:0016575: histone deacetylation2.15E-02
175GO:0043622: cortical microtubule organization2.15E-02
176GO:0048511: rhythmic process2.30E-02
177GO:0061077: chaperone-mediated protein folding2.30E-02
178GO:0009814: defense response, incompatible interaction2.46E-02
179GO:2000022: regulation of jasmonic acid mediated signaling pathway2.46E-02
180GO:0035428: hexose transmembrane transport2.46E-02
181GO:0007005: mitochondrion organization2.46E-02
182GO:0031348: negative regulation of defense response2.46E-02
183GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.62E-02
184GO:0001944: vasculature development2.62E-02
185GO:0009306: protein secretion2.78E-02
186GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.94E-02
187GO:0008284: positive regulation of cell proliferation2.94E-02
188GO:0015979: photosynthesis3.06E-02
189GO:0045454: cell redox homeostasis3.25E-02
190GO:0009958: positive gravitropism3.28E-02
191GO:0006662: glycerol ether metabolic process3.28E-02
192GO:0010197: polar nucleus fusion3.28E-02
193GO:0046323: glucose import3.28E-02
194GO:0009646: response to absence of light3.45E-02
195GO:0042752: regulation of circadian rhythm3.45E-02
196GO:0019252: starch biosynthetic process3.63E-02
197GO:0000302: response to reactive oxygen species3.81E-02
198GO:0002229: defense response to oomycetes3.81E-02
199GO:0055085: transmembrane transport3.95E-02
200GO:0032502: developmental process3.99E-02
201GO:0016032: viral process3.99E-02
202GO:0030163: protein catabolic process4.17E-02
203GO:0010090: trichome morphogenesis4.17E-02
204GO:0009828: plant-type cell wall loosening4.36E-02
205GO:0006633: fatty acid biosynthetic process4.54E-02
206GO:0000910: cytokinesis4.75E-02
207GO:0001666: response to hypoxia4.94E-02
208GO:0045490: pectin catabolic process4.98E-02
RankGO TermAdjusted P value
1GO:0005048: signal sequence binding0.00E+00
2GO:0004019: adenylosuccinate synthase activity0.00E+00
3GO:0004076: biotin synthase activity0.00E+00
4GO:0003937: IMP cyclohydrolase activity0.00E+00
5GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
6GO:0005363: maltose transmembrane transporter activity0.00E+00
7GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
8GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
9GO:0004643: phosphoribosylaminoimidazolecarboxamide formyltransferase activity0.00E+00
10GO:0046523: S-methyl-5-thioribose-1-phosphate isomerase activity0.00E+00
11GO:0043014: alpha-tubulin binding0.00E+00
12GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
13GO:0051721: protein phosphatase 2A binding0.00E+00
14GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
15GO:0042903: tubulin deacetylase activity0.00E+00
16GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
17GO:0004823: leucine-tRNA ligase activity0.00E+00
18GO:0004056: argininosuccinate lyase activity0.00E+00
19GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
20GO:0004358: glutamate N-acetyltransferase activity0.00E+00
21GO:0008237: metallopeptidase activity4.96E-06
22GO:0004326: tetrahydrofolylpolyglutamate synthase activity6.33E-06
23GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase6.33E-06
24GO:0004176: ATP-dependent peptidase activity1.23E-05
25GO:0016851: magnesium chelatase activity4.86E-05
26GO:0001053: plastid sigma factor activity8.61E-05
27GO:0016987: sigma factor activity8.61E-05
28GO:0004222: metalloendopeptidase activity2.03E-04
29GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity3.75E-04
30GO:0005227: calcium activated cation channel activity3.75E-04
31GO:0004733: pyridoxamine-phosphate oxidase activity3.75E-04
32GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity3.75E-04
33GO:0004813: alanine-tRNA ligase activity3.75E-04
34GO:0004853: uroporphyrinogen decarboxylase activity3.75E-04
35GO:0004832: valine-tRNA ligase activity3.75E-04
36GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.75E-04
37GO:0052857: NADPHX epimerase activity3.75E-04
38GO:0052856: NADHX epimerase activity3.75E-04
39GO:0043621: protein self-association4.39E-04
40GO:0003723: RNA binding5.43E-04
41GO:0005525: GTP binding6.58E-04
42GO:0009977: proton motive force dependent protein transmembrane transporter activity8.15E-04
43GO:0033741: adenylyl-sulfate reductase (glutathione) activity8.15E-04
44GO:0004817: cysteine-tRNA ligase activity8.15E-04
45GO:0009973: adenylyl-sulfate reductase activity8.15E-04
46GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity8.15E-04
47GO:0003919: FMN adenylyltransferase activity8.15E-04
48GO:0004829: threonine-tRNA ligase activity8.15E-04
49GO:0019156: isoamylase activity8.15E-04
50GO:0015462: ATPase-coupled protein transmembrane transporter activity1.32E-03
51GO:0046524: sucrose-phosphate synthase activity1.32E-03
52GO:0070330: aromatase activity1.32E-03
53GO:0003913: DNA photolyase activity1.32E-03
54GO:0002161: aminoacyl-tRNA editing activity1.32E-03
55GO:0070402: NADPH binding1.32E-03
56GO:0001872: (1->3)-beta-D-glucan binding1.91E-03
57GO:0048487: beta-tubulin binding1.91E-03
58GO:0043023: ribosomal large subunit binding1.91E-03
59GO:0004045: aminoacyl-tRNA hydrolase activity2.56E-03
60GO:0009044: xylan 1,4-beta-xylosidase activity2.56E-03
61GO:0019199: transmembrane receptor protein kinase activity2.56E-03
62GO:0042277: peptide binding2.56E-03
63GO:0046556: alpha-L-arabinofuranosidase activity2.56E-03
64GO:0004659: prenyltransferase activity2.56E-03
65GO:0016279: protein-lysine N-methyltransferase activity2.56E-03
66GO:0030570: pectate lyase activity2.86E-03
67GO:0045300: acyl-[acyl-carrier-protein] desaturase activity3.28E-03
68GO:0018685: alkane 1-monooxygenase activity3.28E-03
69GO:0004040: amidase activity3.28E-03
70GO:0004812: aminoacyl-tRNA ligase activity3.37E-03
71GO:2001070: starch binding4.05E-03
72GO:0004332: fructose-bisphosphate aldolase activity4.05E-03
73GO:0004526: ribonuclease P activity4.05E-03
74GO:0004556: alpha-amylase activity4.05E-03
75GO:0042578: phosphoric ester hydrolase activity4.05E-03
76GO:0016832: aldehyde-lyase activity4.88E-03
77GO:0004144: diacylglycerol O-acyltransferase activity4.88E-03
78GO:0004723: calcium-dependent protein serine/threonine phosphatase activity4.88E-03
79GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor5.52E-03
80GO:0009881: photoreceptor activity5.77E-03
81GO:0005337: nucleoside transmembrane transporter activity6.70E-03
82GO:0008312: 7S RNA binding6.70E-03
83GO:0043022: ribosome binding6.70E-03
84GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)7.69E-03
85GO:0015238: drug transmembrane transporter activity9.64E-03
86GO:0005381: iron ion transmembrane transporter activity9.82E-03
87GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.06E-02
88GO:0004805: trehalose-phosphatase activity1.10E-02
89GO:0003924: GTPase activity1.18E-02
90GO:0044183: protein binding involved in protein folding1.21E-02
91GO:0008559: xenobiotic-transporting ATPase activity1.21E-02
92GO:0051539: 4 iron, 4 sulfur cluster binding1.33E-02
93GO:0000049: tRNA binding1.34E-02
94GO:0004519: endonuclease activity1.34E-02
95GO:0003743: translation initiation factor activity1.39E-02
96GO:0004565: beta-galactosidase activity1.46E-02
97GO:0008083: growth factor activity1.59E-02
98GO:0051537: 2 iron, 2 sulfur cluster binding1.63E-02
99GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.87E-02
100GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.87E-02
101GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.87E-02
102GO:0004407: histone deacetylase activity2.01E-02
103GO:0003714: transcription corepressor activity2.01E-02
104GO:0051536: iron-sulfur cluster binding2.01E-02
105GO:0003899: DNA-directed 5'-3' RNA polymerase activity2.03E-02
106GO:0005524: ATP binding2.15E-02
107GO:0016887: ATPase activity2.28E-02
108GO:0022891: substrate-specific transmembrane transporter activity2.62E-02
109GO:0003727: single-stranded RNA binding2.78E-02
110GO:0047134: protein-disulfide reductase activity2.94E-02
111GO:0008536: Ran GTPase binding3.28E-02
112GO:0004791: thioredoxin-disulfide reductase activity3.45E-02
113GO:0016853: isomerase activity3.45E-02
114GO:0005355: glucose transmembrane transporter activity3.45E-02
115GO:0010181: FMN binding3.45E-02
116GO:0019843: rRNA binding3.62E-02
117GO:0004872: receptor activity3.63E-02
118GO:0016829: lyase activity3.92E-02
119GO:0004252: serine-type endopeptidase activity4.02E-02
120GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds4.17E-02
121GO:0008565: protein transporter activity4.33E-02
122GO:0016791: phosphatase activity4.36E-02
123GO:0008483: transaminase activity4.55E-02
124GO:0016722: oxidoreductase activity, oxidizing metal ions4.55E-02
125GO:0009055: electron carrier activity4.58E-02
126GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.65E-02
127GO:0016597: amino acid binding4.75E-02
128GO:0015297: antiporter activity4.76E-02
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Gene type



Gene DE type