GO Enrichment Analysis of Co-expressed Genes with
AT3G01860
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 0.00E+00 |
| 2 | GO:0045014: negative regulation of transcription by glucose | 0.00E+00 |
| 3 | GO:0000491: small nucleolar ribonucleoprotein complex assembly | 0.00E+00 |
| 4 | GO:0035563: positive regulation of chromatin binding | 0.00E+00 |
| 5 | GO:0090322: regulation of superoxide metabolic process | 0.00E+00 |
| 6 | GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement | 0.00E+00 |
| 7 | GO:0060966: regulation of gene silencing by RNA | 0.00E+00 |
| 8 | GO:0006437: tyrosyl-tRNA aminoacylation | 0.00E+00 |
| 9 | GO:0019988: charged-tRNA amino acid modification | 0.00E+00 |
| 10 | GO:0070829: heterochromatin maintenance | 0.00E+00 |
| 11 | GO:0071360: cellular response to exogenous dsRNA | 0.00E+00 |
| 12 | GO:0000492: box C/D snoRNP assembly | 0.00E+00 |
| 13 | GO:1900370: positive regulation of RNA interference | 0.00E+00 |
| 14 | GO:0009102: biotin biosynthetic process | 1.08E-05 |
| 15 | GO:0010305: leaf vascular tissue pattern formation | 8.31E-05 |
| 16 | GO:0006430: lysyl-tRNA aminoacylation | 1.60E-04 |
| 17 | GO:1900368: regulation of RNA interference | 1.60E-04 |
| 18 | GO:1901529: positive regulation of anion channel activity | 3.65E-04 |
| 19 | GO:0048731: system development | 3.65E-04 |
| 20 | GO:2000071: regulation of defense response by callose deposition | 3.65E-04 |
| 21 | GO:0050688: regulation of defense response to virus | 3.65E-04 |
| 22 | GO:0010541: acropetal auxin transport | 3.65E-04 |
| 23 | GO:1900111: positive regulation of histone H3-K9 dimethylation | 3.65E-04 |
| 24 | GO:0043039: tRNA aminoacylation | 3.65E-04 |
| 25 | GO:0009793: embryo development ending in seed dormancy | 3.98E-04 |
| 26 | GO:0010540: basipetal auxin transport | 4.38E-04 |
| 27 | GO:0006518: peptide metabolic process | 5.97E-04 |
| 28 | GO:0032776: DNA methylation on cytosine | 5.97E-04 |
| 29 | GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement | 5.97E-04 |
| 30 | GO:0060968: regulation of gene silencing | 5.97E-04 |
| 31 | GO:0006418: tRNA aminoacylation for protein translation | 6.66E-04 |
| 32 | GO:0006364: rRNA processing | 7.69E-04 |
| 33 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 7.98E-04 |
| 34 | GO:0007276: gamete generation | 8.53E-04 |
| 35 | GO:0060964: regulation of gene silencing by miRNA | 8.53E-04 |
| 36 | GO:0042127: regulation of cell proliferation | 9.39E-04 |
| 37 | GO:0009956: radial pattern formation | 1.13E-03 |
| 38 | GO:1900864: mitochondrial RNA modification | 1.13E-03 |
| 39 | GO:0009616: virus induced gene silencing | 1.43E-03 |
| 40 | GO:0016120: carotene biosynthetic process | 1.43E-03 |
| 41 | GO:0016123: xanthophyll biosynthetic process | 1.43E-03 |
| 42 | GO:0060918: auxin transport | 1.76E-03 |
| 43 | GO:0042793: transcription from plastid promoter | 1.76E-03 |
| 44 | GO:0009643: photosynthetic acclimation | 1.76E-03 |
| 45 | GO:0009959: negative gravitropism | 1.76E-03 |
| 46 | GO:0009942: longitudinal axis specification | 2.11E-03 |
| 47 | GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity | 2.11E-03 |
| 48 | GO:0010310: regulation of hydrogen peroxide metabolic process | 2.11E-03 |
| 49 | GO:0040008: regulation of growth | 2.23E-03 |
| 50 | GO:0009451: RNA modification | 2.44E-03 |
| 51 | GO:1900056: negative regulation of leaf senescence | 2.48E-03 |
| 52 | GO:0010050: vegetative phase change | 2.48E-03 |
| 53 | GO:0010098: suspensor development | 2.48E-03 |
| 54 | GO:0006401: RNA catabolic process | 2.48E-03 |
| 55 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 2.88E-03 |
| 56 | GO:0042255: ribosome assembly | 2.88E-03 |
| 57 | GO:0046620: regulation of organ growth | 2.88E-03 |
| 58 | GO:0006353: DNA-templated transcription, termination | 2.88E-03 |
| 59 | GO:0006402: mRNA catabolic process | 2.88E-03 |
| 60 | GO:0010492: maintenance of shoot apical meristem identity | 2.88E-03 |
| 61 | GO:0048564: photosystem I assembly | 2.88E-03 |
| 62 | GO:0045292: mRNA cis splicing, via spliceosome | 2.88E-03 |
| 63 | GO:0007389: pattern specification process | 3.29E-03 |
| 64 | GO:0000373: Group II intron splicing | 3.72E-03 |
| 65 | GO:0048589: developmental growth | 3.72E-03 |
| 66 | GO:0009658: chloroplast organization | 4.12E-03 |
| 67 | GO:1900865: chloroplast RNA modification | 4.17E-03 |
| 68 | GO:0031425: chloroplast RNA processing | 4.17E-03 |
| 69 | GO:0010267: production of ta-siRNAs involved in RNA interference | 4.17E-03 |
| 70 | GO:0006535: cysteine biosynthetic process from serine | 4.64E-03 |
| 71 | GO:0030422: production of siRNA involved in RNA interference | 4.64E-03 |
| 72 | GO:0048829: root cap development | 4.64E-03 |
| 73 | GO:0009641: shade avoidance | 4.64E-03 |
| 74 | GO:0006949: syncytium formation | 4.64E-03 |
| 75 | GO:0009682: induced systemic resistance | 5.12E-03 |
| 76 | GO:1903507: negative regulation of nucleic acid-templated transcription | 5.12E-03 |
| 77 | GO:0009750: response to fructose | 5.12E-03 |
| 78 | GO:0046856: phosphatidylinositol dephosphorylation | 5.12E-03 |
| 79 | GO:0031347: regulation of defense response | 5.28E-03 |
| 80 | GO:0012501: programmed cell death | 5.62E-03 |
| 81 | GO:0010152: pollen maturation | 5.62E-03 |
| 82 | GO:0010588: cotyledon vascular tissue pattern formation | 6.14E-03 |
| 83 | GO:0009933: meristem structural organization | 6.67E-03 |
| 84 | GO:0009887: animal organ morphogenesis | 6.67E-03 |
| 85 | GO:0048768: root hair cell tip growth | 6.67E-03 |
| 86 | GO:0048367: shoot system development | 7.18E-03 |
| 87 | GO:0009825: multidimensional cell growth | 7.22E-03 |
| 88 | GO:0080188: RNA-directed DNA methylation | 7.22E-03 |
| 89 | GO:0010025: wax biosynthetic process | 7.79E-03 |
| 90 | GO:0006863: purine nucleobase transport | 7.79E-03 |
| 91 | GO:0009740: gibberellic acid mediated signaling pathway | 7.88E-03 |
| 92 | GO:2000377: regulation of reactive oxygen species metabolic process | 8.38E-03 |
| 93 | GO:0019344: cysteine biosynthetic process | 8.38E-03 |
| 94 | GO:0006306: DNA methylation | 9.59E-03 |
| 95 | GO:0003333: amino acid transmembrane transport | 9.59E-03 |
| 96 | GO:0030245: cellulose catabolic process | 1.02E-02 |
| 97 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.09E-02 |
| 98 | GO:0009686: gibberellin biosynthetic process | 1.09E-02 |
| 99 | GO:0048443: stamen development | 1.15E-02 |
| 100 | GO:0006284: base-excision repair | 1.15E-02 |
| 101 | GO:0080022: primary root development | 1.29E-02 |
| 102 | GO:0008033: tRNA processing | 1.29E-02 |
| 103 | GO:0010501: RNA secondary structure unwinding | 1.29E-02 |
| 104 | GO:0010087: phloem or xylem histogenesis | 1.29E-02 |
| 105 | GO:0010118: stomatal movement | 1.29E-02 |
| 106 | GO:0071472: cellular response to salt stress | 1.36E-02 |
| 107 | GO:0009734: auxin-activated signaling pathway | 1.37E-02 |
| 108 | GO:0009749: response to glucose | 1.50E-02 |
| 109 | GO:0002229: defense response to oomycetes | 1.58E-02 |
| 110 | GO:0009908: flower development | 1.62E-02 |
| 111 | GO:0010583: response to cyclopentenone | 1.65E-02 |
| 112 | GO:0032502: developmental process | 1.65E-02 |
| 113 | GO:0030163: protein catabolic process | 1.73E-02 |
| 114 | GO:0019760: glucosinolate metabolic process | 1.81E-02 |
| 115 | GO:0009639: response to red or far red light | 1.81E-02 |
| 116 | GO:0009828: plant-type cell wall loosening | 1.81E-02 |
| 117 | GO:0051607: defense response to virus | 1.97E-02 |
| 118 | GO:0015995: chlorophyll biosynthetic process | 2.30E-02 |
| 119 | GO:0016311: dephosphorylation | 2.39E-02 |
| 120 | GO:0048481: plant ovule development | 2.47E-02 |
| 121 | GO:0010218: response to far red light | 2.65E-02 |
| 122 | GO:0006865: amino acid transport | 2.84E-02 |
| 123 | GO:0009867: jasmonic acid mediated signaling pathway | 2.93E-02 |
| 124 | GO:0030001: metal ion transport | 3.21E-02 |
| 125 | GO:0010114: response to red light | 3.51E-02 |
| 126 | GO:0009926: auxin polar transport | 3.51E-02 |
| 127 | GO:0009744: response to sucrose | 3.51E-02 |
| 128 | GO:0051707: response to other organism | 3.51E-02 |
| 129 | GO:0007165: signal transduction | 3.73E-02 |
| 130 | GO:0009965: leaf morphogenesis | 3.81E-02 |
| 131 | GO:0006260: DNA replication | 4.02E-02 |
| 132 | GO:0006281: DNA repair | 4.11E-02 |
| 133 | GO:0009664: plant-type cell wall organization | 4.12E-02 |
| 134 | GO:0009736: cytokinin-activated signaling pathway | 4.34E-02 |
| 135 | GO:0006417: regulation of translation | 4.66E-02 |
| 136 | GO:0048316: seed development | 4.99E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016763: transferase activity, transferring pentosyl groups | 0.00E+00 |
| 2 | GO:0004141: dethiobiotin synthase activity | 0.00E+00 |
| 3 | GO:0008710: 8-amino-7-oxononanoate synthase activity | 0.00E+00 |
| 4 | GO:0004015: adenosylmethionine-8-amino-7-oxononanoate transaminase activity | 0.00E+00 |
| 5 | GO:0009899: ent-kaurene synthase activity | 0.00E+00 |
| 6 | GO:0043399: tRNA A64-2'-O-ribosylphosphate transferase activity | 0.00E+00 |
| 7 | GO:0004824: lysine-tRNA ligase activity | 1.60E-04 |
| 8 | GO:0004831: tyrosine-tRNA ligase activity | 1.60E-04 |
| 9 | GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor | 1.60E-04 |
| 10 | GO:0004654: polyribonucleotide nucleotidyltransferase activity | 1.60E-04 |
| 11 | GO:0003723: RNA binding | 9.89E-04 |
| 12 | GO:0004812: aminoacyl-tRNA ligase activity | 1.01E-03 |
| 13 | GO:0010328: auxin influx transmembrane transporter activity | 1.13E-03 |
| 14 | GO:0010011: auxin binding | 1.13E-03 |
| 15 | GO:0008725: DNA-3-methyladenine glycosylase activity | 1.43E-03 |
| 16 | GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity | 1.76E-03 |
| 17 | GO:0030170: pyridoxal phosphate binding | 1.80E-03 |
| 18 | GO:0004124: cysteine synthase activity | 2.11E-03 |
| 19 | GO:0030515: snoRNA binding | 2.48E-03 |
| 20 | GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity | 5.62E-03 |
| 21 | GO:0000175: 3'-5'-exoribonuclease activity | 6.14E-03 |
| 22 | GO:0003725: double-stranded RNA binding | 6.14E-03 |
| 23 | GO:0008266: poly(U) RNA binding | 6.67E-03 |
| 24 | GO:0042803: protein homodimerization activity | 7.21E-03 |
| 25 | GO:0003712: transcription cofactor activity | 7.22E-03 |
| 26 | GO:0004190: aspartic-type endopeptidase activity | 7.22E-03 |
| 27 | GO:0003779: actin binding | 8.12E-03 |
| 28 | GO:0003714: transcription corepressor activity | 8.38E-03 |
| 29 | GO:0005345: purine nucleobase transmembrane transporter activity | 8.97E-03 |
| 30 | GO:0004519: endonuclease activity | 9.87E-03 |
| 31 | GO:0008810: cellulase activity | 1.09E-02 |
| 32 | GO:0003727: single-stranded RNA binding | 1.15E-02 |
| 33 | GO:0005102: receptor binding | 1.22E-02 |
| 34 | GO:0019901: protein kinase binding | 1.50E-02 |
| 35 | GO:0048038: quinone binding | 1.58E-02 |
| 36 | GO:0016791: phosphatase activity | 1.81E-02 |
| 37 | GO:0008483: transaminase activity | 1.89E-02 |
| 38 | GO:0000287: magnesium ion binding | 2.21E-02 |
| 39 | GO:0004672: protein kinase activity | 2.23E-02 |
| 40 | GO:0004004: ATP-dependent RNA helicase activity | 2.30E-02 |
| 41 | GO:0004222: metalloendopeptidase activity | 2.65E-02 |
| 42 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 2.65E-02 |
| 43 | GO:0003697: single-stranded DNA binding | 2.93E-02 |
| 44 | GO:0003993: acid phosphatase activity | 3.02E-02 |
| 45 | GO:0005525: GTP binding | 3.42E-02 |
| 46 | GO:0003677: DNA binding | 3.64E-02 |
| 47 | GO:0004722: protein serine/threonine phosphatase activity | 3.66E-02 |
| 48 | GO:0003676: nucleic acid binding | 3.80E-02 |
| 49 | GO:0015293: symporter activity | 3.81E-02 |
| 50 | GO:0003690: double-stranded DNA binding | 4.44E-02 |
| 51 | GO:0015171: amino acid transmembrane transporter activity | 4.66E-02 |