GO Enrichment Analysis of Co-expressed Genes with
AT3G01370
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008064: regulation of actin polymerization or depolymerization | 0.00E+00 |
| 2 | GO:0051493: regulation of cytoskeleton organization | 0.00E+00 |
| 3 | GO:0044154: histone H3-K14 acetylation | 0.00E+00 |
| 4 | GO:0045014: negative regulation of transcription by glucose | 0.00E+00 |
| 5 | GO:0050776: regulation of immune response | 0.00E+00 |
| 6 | GO:1901698: response to nitrogen compound | 0.00E+00 |
| 7 | GO:0002949: tRNA threonylcarbamoyladenosine modification | 0.00E+00 |
| 8 | GO:0090322: regulation of superoxide metabolic process | 0.00E+00 |
| 9 | GO:0043972: histone H3-K23 acetylation | 0.00E+00 |
| 10 | GO:0080127: fruit septum development | 0.00E+00 |
| 11 | GO:0009734: auxin-activated signaling pathway | 1.31E-05 |
| 12 | GO:0034757: negative regulation of iron ion transport | 1.56E-04 |
| 13 | GO:0034970: histone H3-R2 methylation | 1.56E-04 |
| 14 | GO:0034972: histone H3-R26 methylation | 1.56E-04 |
| 15 | GO:0043971: histone H3-K18 acetylation | 1.56E-04 |
| 16 | GO:0034971: histone H3-R17 methylation | 1.56E-04 |
| 17 | GO:0033206: meiotic cytokinesis | 1.56E-04 |
| 18 | GO:0045892: negative regulation of transcription, DNA-templated | 2.27E-04 |
| 19 | GO:0030422: production of siRNA involved in RNA interference | 2.46E-04 |
| 20 | GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine | 3.55E-04 |
| 21 | GO:0010271: regulation of chlorophyll catabolic process | 3.55E-04 |
| 22 | GO:1900033: negative regulation of trichome patterning | 3.55E-04 |
| 23 | GO:0010102: lateral root morphogenesis | 3.74E-04 |
| 24 | GO:0030029: actin filament-based process | 5.82E-04 |
| 25 | GO:0071705: nitrogen compound transport | 5.82E-04 |
| 26 | GO:0080117: secondary growth | 5.82E-04 |
| 27 | GO:0010589: leaf proximal/distal pattern formation | 5.82E-04 |
| 28 | GO:0009102: biotin biosynthetic process | 8.33E-04 |
| 29 | GO:1902290: positive regulation of defense response to oomycetes | 8.33E-04 |
| 30 | GO:0009909: regulation of flower development | 8.34E-04 |
| 31 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 9.99E-04 |
| 32 | GO:0006808: regulation of nitrogen utilization | 1.10E-03 |
| 33 | GO:0006479: protein methylation | 1.10E-03 |
| 34 | GO:0048629: trichome patterning | 1.10E-03 |
| 35 | GO:1900864: mitochondrial RNA modification | 1.10E-03 |
| 36 | GO:0071249: cellular response to nitrate | 1.10E-03 |
| 37 | GO:0035279: mRNA cleavage involved in gene silencing by miRNA | 1.10E-03 |
| 38 | GO:2000038: regulation of stomatal complex development | 1.10E-03 |
| 39 | GO:0006351: transcription, DNA-templated | 1.24E-03 |
| 40 | GO:0032876: negative regulation of DNA endoreduplication | 1.40E-03 |
| 41 | GO:0030308: negative regulation of cell growth | 1.40E-03 |
| 42 | GO:0009616: virus induced gene silencing | 1.40E-03 |
| 43 | GO:0009639: response to red or far red light | 1.67E-03 |
| 44 | GO:0009959: negative gravitropism | 1.72E-03 |
| 45 | GO:0035194: posttranscriptional gene silencing by RNA | 1.72E-03 |
| 46 | GO:0016554: cytidine to uridine editing | 1.72E-03 |
| 47 | GO:0048831: regulation of shoot system development | 1.72E-03 |
| 48 | GO:0003006: developmental process involved in reproduction | 1.72E-03 |
| 49 | GO:0009643: photosynthetic acclimation | 1.72E-03 |
| 50 | GO:2000037: regulation of stomatal complex patterning | 2.06E-03 |
| 51 | GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity | 2.06E-03 |
| 52 | GO:0010310: regulation of hydrogen peroxide metabolic process | 2.06E-03 |
| 53 | GO:0010067: procambium histogenesis | 2.06E-03 |
| 54 | GO:2000033: regulation of seed dormancy process | 2.06E-03 |
| 55 | GO:0048509: regulation of meristem development | 2.06E-03 |
| 56 | GO:0010029: regulation of seed germination | 2.11E-03 |
| 57 | GO:0006468: protein phosphorylation | 2.40E-03 |
| 58 | GO:0035196: production of miRNAs involved in gene silencing by miRNA | 2.42E-03 |
| 59 | GO:0010103: stomatal complex morphogenesis | 2.42E-03 |
| 60 | GO:0006955: immune response | 2.42E-03 |
| 61 | GO:0010928: regulation of auxin mediated signaling pathway | 2.80E-03 |
| 62 | GO:0009938: negative regulation of gibberellic acid mediated signaling pathway | 2.80E-03 |
| 63 | GO:0006355: regulation of transcription, DNA-templated | 3.00E-03 |
| 64 | GO:0010093: specification of floral organ identity | 3.21E-03 |
| 65 | GO:0009880: embryonic pattern specification | 3.21E-03 |
| 66 | GO:0001510: RNA methylation | 3.21E-03 |
| 67 | GO:0010233: phloem transport | 3.21E-03 |
| 68 | GO:0006261: DNA-dependent DNA replication | 3.21E-03 |
| 69 | GO:0010100: negative regulation of photomorphogenesis | 3.21E-03 |
| 70 | GO:0007389: pattern specification process | 3.21E-03 |
| 71 | GO:0044030: regulation of DNA methylation | 3.21E-03 |
| 72 | GO:0009245: lipid A biosynthetic process | 3.63E-03 |
| 73 | GO:0048507: meristem development | 3.63E-03 |
| 74 | GO:0048589: developmental growth | 3.63E-03 |
| 75 | GO:0009733: response to auxin | 3.85E-03 |
| 76 | GO:0009658: chloroplast organization | 3.92E-03 |
| 77 | GO:1900426: positive regulation of defense response to bacterium | 4.06E-03 |
| 78 | GO:1900865: chloroplast RNA modification | 4.06E-03 |
| 79 | GO:0006349: regulation of gene expression by genetic imprinting | 4.06E-03 |
| 80 | GO:0016571: histone methylation | 4.06E-03 |
| 81 | GO:0016573: histone acetylation | 4.06E-03 |
| 82 | GO:0006970: response to osmotic stress | 4.31E-03 |
| 83 | GO:0010048: vernalization response | 4.52E-03 |
| 84 | GO:0006535: cysteine biosynthetic process from serine | 4.52E-03 |
| 85 | GO:0048829: root cap development | 4.52E-03 |
| 86 | GO:0008361: regulation of cell size | 5.48E-03 |
| 87 | GO:0010582: floral meristem determinacy | 5.48E-03 |
| 88 | GO:0015706: nitrate transport | 5.48E-03 |
| 89 | GO:0010152: pollen maturation | 5.48E-03 |
| 90 | GO:0009266: response to temperature stimulus | 6.50E-03 |
| 91 | GO:0048467: gynoecium development | 6.50E-03 |
| 92 | GO:0010020: chloroplast fission | 6.50E-03 |
| 93 | GO:0006270: DNA replication initiation | 6.50E-03 |
| 94 | GO:0010223: secondary shoot formation | 6.50E-03 |
| 95 | GO:0080188: RNA-directed DNA methylation | 7.04E-03 |
| 96 | GO:0010167: response to nitrate | 7.04E-03 |
| 97 | GO:0016569: covalent chromatin modification | 7.59E-03 |
| 98 | GO:0009740: gibberellic acid mediated signaling pathway | 7.59E-03 |
| 99 | GO:0019344: cysteine biosynthetic process | 8.16E-03 |
| 100 | GO:0009863: salicylic acid mediated signaling pathway | 8.16E-03 |
| 101 | GO:0006338: chromatin remodeling | 8.16E-03 |
| 102 | GO:0010187: negative regulation of seed germination | 8.16E-03 |
| 103 | GO:0080147: root hair cell development | 8.16E-03 |
| 104 | GO:2000377: regulation of reactive oxygen species metabolic process | 8.16E-03 |
| 105 | GO:0006306: DNA methylation | 9.34E-03 |
| 106 | GO:0003333: amino acid transmembrane transport | 9.34E-03 |
| 107 | GO:0016998: cell wall macromolecule catabolic process | 9.34E-03 |
| 108 | GO:0071215: cellular response to abscisic acid stimulus | 1.06E-02 |
| 109 | GO:0009686: gibberellin biosynthetic process | 1.06E-02 |
| 110 | GO:0001944: vasculature development | 1.06E-02 |
| 111 | GO:0010089: xylem development | 1.12E-02 |
| 112 | GO:0048443: stamen development | 1.12E-02 |
| 113 | GO:0006284: base-excision repair | 1.12E-02 |
| 114 | GO:0070417: cellular response to cold | 1.19E-02 |
| 115 | GO:0010087: phloem or xylem histogenesis | 1.25E-02 |
| 116 | GO:0042631: cellular response to water deprivation | 1.25E-02 |
| 117 | GO:0000271: polysaccharide biosynthetic process | 1.25E-02 |
| 118 | GO:0010051: xylem and phloem pattern formation | 1.25E-02 |
| 119 | GO:0009960: endosperm development | 1.32E-02 |
| 120 | GO:0045489: pectin biosynthetic process | 1.32E-02 |
| 121 | GO:0010305: leaf vascular tissue pattern formation | 1.32E-02 |
| 122 | GO:0008360: regulation of cell shape | 1.32E-02 |
| 123 | GO:0009958: positive gravitropism | 1.32E-02 |
| 124 | GO:0040008: regulation of growth | 1.33E-02 |
| 125 | GO:0007018: microtubule-based movement | 1.39E-02 |
| 126 | GO:0048544: recognition of pollen | 1.39E-02 |
| 127 | GO:0080156: mitochondrial mRNA modification | 1.54E-02 |
| 128 | GO:0002229: defense response to oomycetes | 1.54E-02 |
| 129 | GO:0009739: response to gibberellin | 1.56E-02 |
| 130 | GO:0007264: small GTPase mediated signal transduction | 1.61E-02 |
| 131 | GO:0031047: gene silencing by RNA | 1.61E-02 |
| 132 | GO:0010090: trichome morphogenesis | 1.68E-02 |
| 133 | GO:0009416: response to light stimulus | 1.75E-02 |
| 134 | GO:0010252: auxin homeostasis | 1.76E-02 |
| 135 | GO:0048481: plant ovule development | 2.41E-02 |
| 136 | GO:0000160: phosphorelay signal transduction system | 2.50E-02 |
| 137 | GO:0010218: response to far red light | 2.58E-02 |
| 138 | GO:0009910: negative regulation of flower development | 2.67E-02 |
| 139 | GO:0006865: amino acid transport | 2.76E-02 |
| 140 | GO:0009867: jasmonic acid mediated signaling pathway | 2.85E-02 |
| 141 | GO:0016051: carbohydrate biosynthetic process | 2.85E-02 |
| 142 | GO:0015979: photosynthesis | 3.07E-02 |
| 143 | GO:0009926: auxin polar transport | 3.42E-02 |
| 144 | GO:0008283: cell proliferation | 3.42E-02 |
| 145 | GO:0010114: response to red light | 3.42E-02 |
| 146 | GO:0009636: response to toxic substance | 3.71E-02 |
| 147 | GO:0031347: regulation of defense response | 3.91E-02 |
| 148 | GO:0006260: DNA replication | 3.91E-02 |
| 149 | GO:0006281: DNA repair | 3.96E-02 |
| 150 | GO:0042538: hyperosmotic salinity response | 4.01E-02 |
| 151 | GO:0009414: response to water deprivation | 4.10E-02 |
| 152 | GO:0009793: embryo development ending in seed dormancy | 4.11E-02 |
| 153 | GO:0048364: root development | 4.13E-02 |
| 154 | GO:0009585: red, far-red light phototransduction | 4.22E-02 |
| 155 | GO:0009736: cytokinin-activated signaling pathway | 4.22E-02 |
| 156 | GO:0006096: glycolytic process | 4.75E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004141: dethiobiotin synthase activity | 0.00E+00 |
| 2 | GO:0004808: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity | 0.00E+00 |
| 3 | GO:0061711: N(6)-L-threonylcarbamoyladenine synthase | 0.00E+00 |
| 4 | GO:0004015: adenosylmethionine-8-amino-7-oxononanoate transaminase activity | 0.00E+00 |
| 5 | GO:0004016: adenylate cyclase activity | 1.56E-04 |
| 6 | GO:0042834: peptidoglycan binding | 1.56E-04 |
| 7 | GO:0016274: protein-arginine N-methyltransferase activity | 1.56E-04 |
| 8 | GO:0004674: protein serine/threonine kinase activity | 2.33E-04 |
| 9 | GO:0009884: cytokinin receptor activity | 3.55E-04 |
| 10 | GO:0035241: protein-arginine omega-N monomethyltransferase activity | 3.55E-04 |
| 11 | GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity | 3.55E-04 |
| 12 | GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity | 3.55E-04 |
| 13 | GO:0016707: gibberellin 3-beta-dioxygenase activity | 5.82E-04 |
| 14 | GO:0008469: histone-arginine N-methyltransferase activity | 5.82E-04 |
| 15 | GO:0032549: ribonucleoside binding | 5.82E-04 |
| 16 | GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity | 5.82E-04 |
| 17 | GO:0005034: osmosensor activity | 5.82E-04 |
| 18 | GO:0010011: auxin binding | 1.10E-03 |
| 19 | GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed | 1.10E-03 |
| 20 | GO:0010328: auxin influx transmembrane transporter activity | 1.10E-03 |
| 21 | GO:0010385: double-stranded methylated DNA binding | 1.10E-03 |
| 22 | GO:0008725: DNA-3-methyladenine glycosylase activity | 1.40E-03 |
| 23 | GO:0003688: DNA replication origin binding | 1.72E-03 |
| 24 | GO:0031177: phosphopantetheine binding | 1.72E-03 |
| 25 | GO:0004124: cysteine synthase activity | 2.06E-03 |
| 26 | GO:0000035: acyl binding | 2.06E-03 |
| 27 | GO:0019900: kinase binding | 2.06E-03 |
| 28 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 2.80E-03 |
| 29 | GO:0008173: RNA methyltransferase activity | 3.21E-03 |
| 30 | GO:0003697: single-stranded DNA binding | 3.27E-03 |
| 31 | GO:0000989: transcription factor activity, transcription factor binding | 3.63E-03 |
| 32 | GO:0008168: methyltransferase activity | 3.74E-03 |
| 33 | GO:0009672: auxin:proton symporter activity | 4.06E-03 |
| 34 | GO:0003677: DNA binding | 4.27E-03 |
| 35 | GO:0008171: O-methyltransferase activity | 4.52E-03 |
| 36 | GO:0004673: protein histidine kinase activity | 4.52E-03 |
| 37 | GO:0005515: protein binding | 4.63E-03 |
| 38 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 4.99E-03 |
| 39 | GO:0001054: RNA polymerase I activity | 4.99E-03 |
| 40 | GO:0000155: phosphorelay sensor kinase activity | 5.98E-03 |
| 41 | GO:0010329: auxin efflux transmembrane transporter activity | 5.98E-03 |
| 42 | GO:0003725: double-stranded RNA binding | 5.98E-03 |
| 43 | GO:0004871: signal transducer activity | 6.87E-03 |
| 44 | GO:0003779: actin binding | 7.82E-03 |
| 45 | GO:0008134: transcription factor binding | 8.16E-03 |
| 46 | GO:0043424: protein histidine kinase binding | 8.74E-03 |
| 47 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 9.96E-03 |
| 48 | GO:0003700: transcription factor activity, sequence-specific DNA binding | 1.04E-02 |
| 49 | GO:0030170: pyridoxal phosphate binding | 1.12E-02 |
| 50 | GO:0003727: single-stranded RNA binding | 1.12E-02 |
| 51 | GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding | 1.15E-02 |
| 52 | GO:0018024: histone-lysine N-methyltransferase activity | 1.19E-02 |
| 53 | GO:0004402: histone acetyltransferase activity | 1.25E-02 |
| 54 | GO:0004527: exonuclease activity | 1.32E-02 |
| 55 | GO:0019901: protein kinase binding | 1.46E-02 |
| 56 | GO:0016301: kinase activity | 1.68E-02 |
| 57 | GO:0003723: RNA binding | 1.73E-02 |
| 58 | GO:0042802: identical protein binding | 1.78E-02 |
| 59 | GO:0005200: structural constituent of cytoskeleton | 1.84E-02 |
| 60 | GO:0005524: ATP binding | 2.13E-02 |
| 61 | GO:0008236: serine-type peptidase activity | 2.32E-02 |
| 62 | GO:0004222: metalloendopeptidase activity | 2.58E-02 |
| 63 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 2.58E-02 |
| 64 | GO:0042393: histone binding | 3.13E-02 |
| 65 | GO:0051539: 4 iron, 4 sulfur cluster binding | 3.13E-02 |
| 66 | GO:0042803: protein homodimerization activity | 3.37E-02 |
| 67 | GO:0043621: protein self-association | 3.61E-02 |
| 68 | GO:0015293: symporter activity | 3.71E-02 |
| 69 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 4.22E-02 |
| 70 | GO:0004519: endonuclease activity | 4.30E-02 |
| 71 | GO:0016298: lipase activity | 4.33E-02 |
| 72 | GO:0003690: double-stranded DNA binding | 4.33E-02 |
| 73 | GO:0003777: microtubule motor activity | 4.54E-02 |
| 74 | GO:0015171: amino acid transmembrane transporter activity | 4.54E-02 |