Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G01060

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0033231: carbohydrate export0.00E+00
2GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
3GO:0005996: monosaccharide metabolic process0.00E+00
4GO:0015717: triose phosphate transport0.00E+00
5GO:0046471: phosphatidylglycerol metabolic process0.00E+00
6GO:1905157: positive regulation of photosynthesis0.00E+00
7GO:0006982: response to lipid hydroperoxide0.00E+00
8GO:0010335: response to non-ionic osmotic stress0.00E+00
9GO:1901918: negative regulation of exoribonuclease activity0.00E+00
10GO:0055114: oxidation-reduction process7.61E-07
11GO:0006094: gluconeogenesis8.51E-07
12GO:0019253: reductive pentose-phosphate cycle1.14E-06
13GO:0030388: fructose 1,6-bisphosphate metabolic process3.07E-06
14GO:0006000: fructose metabolic process1.11E-05
15GO:0019252: starch biosynthetic process1.55E-05
16GO:0015979: photosynthesis1.88E-05
17GO:0042823: pyridoxal phosphate biosynthetic process2.51E-05
18GO:0010600: regulation of auxin biosynthetic process4.54E-05
19GO:0015994: chlorophyll metabolic process4.54E-05
20GO:0010207: photosystem II assembly4.73E-05
21GO:0015995: chlorophyll biosynthetic process5.20E-05
22GO:0006636: unsaturated fatty acid biosynthetic process6.74E-05
23GO:0009643: photosynthetic acclimation1.05E-04
24GO:0010244: response to low fluence blue light stimulus by blue low-fluence system1.45E-04
25GO:0009772: photosynthetic electron transport in photosystem II1.90E-04
26GO:0009704: de-etiolation2.41E-04
27GO:0010928: regulation of auxin mediated signaling pathway2.41E-04
28GO:0030974: thiamine pyrophosphate transport2.57E-04
29GO:0046467: membrane lipid biosynthetic process2.57E-04
30GO:0046900: tetrahydrofolylpolyglutamate metabolic process2.57E-04
31GO:1904966: positive regulation of vitamin E biosynthetic process2.57E-04
32GO:0051775: response to redox state2.57E-04
33GO:1904964: positive regulation of phytol biosynthetic process2.57E-04
34GO:0071277: cellular response to calcium ion2.57E-04
35GO:0042371: vitamin K biosynthetic process2.57E-04
36GO:0071461: cellular response to redox state2.57E-04
37GO:0046167: glycerol-3-phosphate biosynthetic process2.57E-04
38GO:0043007: maintenance of rDNA2.57E-04
39GO:0019510: S-adenosylhomocysteine catabolic process2.57E-04
40GO:1902334: fructose export from vacuole to cytoplasm2.57E-04
41GO:0051180: vitamin transport2.57E-04
42GO:0015755: fructose transport2.57E-04
43GO:0032544: plastid translation2.98E-04
44GO:0006002: fructose 6-phosphate metabolic process2.98E-04
45GO:0006754: ATP biosynthetic process3.60E-04
46GO:0009658: chloroplast organization4.03E-04
47GO:0033353: S-adenosylmethionine cycle5.68E-04
48GO:1902326: positive regulation of chlorophyll biosynthetic process5.68E-04
49GO:0015893: drug transport5.68E-04
50GO:0006650: glycerophospholipid metabolic process5.68E-04
51GO:0008616: queuosine biosynthetic process5.68E-04
52GO:0015790: UDP-xylose transport5.68E-04
53GO:0080005: photosystem stoichiometry adjustment5.68E-04
54GO:0042819: vitamin B6 biosynthetic process5.68E-04
55GO:0009773: photosynthetic electron transport in photosystem I5.76E-04
56GO:0018119: peptidyl-cysteine S-nitrosylation5.76E-04
57GO:0044550: secondary metabolite biosynthetic process6.90E-04
58GO:0005986: sucrose biosynthetic process7.47E-04
59GO:0046168: glycerol-3-phosphate catabolic process9.22E-04
60GO:0035436: triose phosphate transmembrane transport9.22E-04
61GO:0044375: regulation of peroxisome size9.22E-04
62GO:0006081: cellular aldehyde metabolic process9.22E-04
63GO:0034599: cellular response to oxidative stress9.43E-04
64GO:0006072: glycerol-3-phosphate metabolic process1.32E-03
65GO:0008615: pyridoxine biosynthetic process1.32E-03
66GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.32E-03
67GO:2001141: regulation of RNA biosynthetic process1.32E-03
68GO:0071484: cellular response to light intensity1.32E-03
69GO:0006107: oxaloacetate metabolic process1.32E-03
70GO:0006546: glycine catabolic process1.76E-03
71GO:0006734: NADH metabolic process1.76E-03
72GO:0015713: phosphoglycerate transport1.76E-03
73GO:0010021: amylopectin biosynthetic process1.76E-03
74GO:0015689: molybdate ion transport1.76E-03
75GO:0009765: photosynthesis, light harvesting1.76E-03
76GO:0045727: positive regulation of translation1.76E-03
77GO:0031122: cytoplasmic microtubule organization1.76E-03
78GO:0009585: red, far-red light phototransduction1.78E-03
79GO:0006096: glycolytic process2.20E-03
80GO:0043097: pyrimidine nucleoside salvage2.25E-03
81GO:0035434: copper ion transmembrane transport2.25E-03
82GO:0009107: lipoate biosynthetic process2.25E-03
83GO:0016123: xanthophyll biosynthetic process2.25E-03
84GO:0006662: glycerol ether metabolic process2.26E-03
85GO:0009646: response to absence of light2.43E-03
86GO:0010190: cytochrome b6f complex assembly2.77E-03
87GO:0006206: pyrimidine nucleobase metabolic process2.77E-03
88GO:0042549: photosystem II stabilization2.77E-03
89GO:0017148: negative regulation of translation3.33E-03
90GO:0010189: vitamin E biosynthetic process3.33E-03
91GO:0010019: chloroplast-nucleus signaling pathway3.33E-03
92GO:0045926: negative regulation of growth3.33E-03
93GO:0042742: defense response to bacterium3.34E-03
94GO:1900057: positive regulation of leaf senescence3.93E-03
95GO:0010161: red light signaling pathway3.93E-03
96GO:1900056: negative regulation of leaf senescence3.93E-03
97GO:0005978: glycogen biosynthetic process4.56E-03
98GO:0009231: riboflavin biosynthetic process4.56E-03
99GO:0016559: peroxisome fission4.56E-03
100GO:0008610: lipid biosynthetic process4.56E-03
101GO:0032259: methylation4.75E-03
102GO:0009657: plastid organization5.22E-03
103GO:2000031: regulation of salicylic acid mediated signaling pathway5.22E-03
104GO:0009932: cell tip growth5.22E-03
105GO:0071482: cellular response to light stimulus5.22E-03
106GO:0090333: regulation of stomatal closure5.92E-03
107GO:0006783: heme biosynthetic process5.92E-03
108GO:0010206: photosystem II repair5.92E-03
109GO:0006098: pentose-phosphate shunt5.92E-03
110GO:0010380: regulation of chlorophyll biosynthetic process6.64E-03
111GO:0010205: photoinhibition6.64E-03
112GO:0006779: porphyrin-containing compound biosynthetic process6.64E-03
113GO:0010267: production of ta-siRNAs involved in RNA interference6.64E-03
114GO:0006782: protoporphyrinogen IX biosynthetic process7.40E-03
115GO:0006995: cellular response to nitrogen starvation7.40E-03
116GO:0019538: protein metabolic process7.40E-03
117GO:0009688: abscisic acid biosynthetic process7.40E-03
118GO:0005975: carbohydrate metabolic process7.58E-03
119GO:0043085: positive regulation of catalytic activity8.19E-03
120GO:0006352: DNA-templated transcription, initiation8.19E-03
121GO:0000272: polysaccharide catabolic process8.19E-03
122GO:0009750: response to fructose8.19E-03
123GO:0046856: phosphatidylinositol dephosphorylation8.19E-03
124GO:0019684: photosynthesis, light reaction8.19E-03
125GO:0010114: response to red light8.59E-03
126GO:0009744: response to sucrose8.59E-03
127GO:0002213: defense response to insect9.00E-03
128GO:0016925: protein sumoylation9.00E-03
129GO:0006108: malate metabolic process9.85E-03
130GO:0006006: glucose metabolic process9.85E-03
131GO:0018107: peptidyl-threonine phosphorylation9.85E-03
132GO:0009725: response to hormone9.85E-03
133GO:0009767: photosynthetic electron transport chain9.85E-03
134GO:0006541: glutamine metabolic process1.07E-02
135GO:0005985: sucrose metabolic process1.16E-02
136GO:0007031: peroxisome organization1.16E-02
137GO:0009833: plant-type primary cell wall biogenesis1.25E-02
138GO:0019762: glucosinolate catabolic process1.25E-02
139GO:0010025: wax biosynthetic process1.25E-02
140GO:0006406: mRNA export from nucleus1.35E-02
141GO:0043086: negative regulation of catalytic activity1.37E-02
142GO:0009695: jasmonic acid biosynthetic process1.45E-02
143GO:0006825: copper ion transport1.45E-02
144GO:0019953: sexual reproduction1.45E-02
145GO:0051260: protein homooligomerization1.55E-02
146GO:0061077: chaperone-mediated protein folding1.55E-02
147GO:0031408: oxylipin biosynthetic process1.55E-02
148GO:0045454: cell redox homeostasis1.61E-02
149GO:2000022: regulation of jasmonic acid mediated signaling pathway1.65E-02
150GO:0030433: ubiquitin-dependent ERAD pathway1.65E-02
151GO:0006730: one-carbon metabolic process1.65E-02
152GO:0030245: cellulose catabolic process1.65E-02
153GO:0010017: red or far-red light signaling pathway1.65E-02
154GO:0006396: RNA processing1.70E-02
155GO:0009742: brassinosteroid mediated signaling pathway1.76E-02
156GO:0009693: ethylene biosynthetic process1.76E-02
157GO:0019722: calcium-mediated signaling1.86E-02
158GO:0009306: protein secretion1.86E-02
159GO:0009409: response to cold1.86E-02
160GO:0006817: phosphate ion transport1.86E-02
161GO:0070417: cellular response to cold1.97E-02
162GO:0006606: protein import into nucleus2.09E-02
163GO:0042631: cellular response to water deprivation2.09E-02
164GO:0006810: transport2.13E-02
165GO:0010182: sugar mediated signaling pathway2.20E-02
166GO:0009741: response to brassinosteroid2.20E-02
167GO:0006520: cellular amino acid metabolic process2.20E-02
168GO:0015986: ATP synthesis coupled proton transport2.32E-02
169GO:0006814: sodium ion transport2.32E-02
170GO:0007059: chromosome segregation2.32E-02
171GO:0008152: metabolic process2.37E-02
172GO:0008654: phospholipid biosynthetic process2.43E-02
173GO:0007264: small GTPase mediated signal transduction2.68E-02
174GO:0010583: response to cyclopentenone2.68E-02
175GO:0031047: gene silencing by RNA2.68E-02
176GO:0007623: circadian rhythm2.87E-02
177GO:0007267: cell-cell signaling3.06E-02
178GO:0051607: defense response to virus3.19E-02
179GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.46E-02
180GO:0042128: nitrate assimilation3.59E-02
181GO:0010411: xyloglucan metabolic process3.73E-02
182GO:0030244: cellulose biosynthetic process4.01E-02
183GO:0018298: protein-chromophore linkage4.01E-02
184GO:0009416: response to light stimulus4.28E-02
185GO:0006499: N-terminal protein myristoylation4.30E-02
186GO:0009407: toxin catabolic process4.30E-02
187GO:0009910: negative regulation of flower development4.45E-02
188GO:0016051: carbohydrate biosynthetic process4.75E-02
189GO:0006099: tricarboxylic acid cycle4.90E-02
RankGO TermAdjusted P value
1GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
2GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
3GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity0.00E+00
4GO:0008974: phosphoribulokinase activity0.00E+00
5GO:0033840: NDP-glucose-starch glucosyltransferase activity0.00E+00
6GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
7GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
8GO:0004768: stearoyl-CoA 9-desaturase activity0.00E+00
9GO:0015284: fructose uniporter activity0.00E+00
10GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
11GO:0009540: zeaxanthin epoxidase [overall] activity0.00E+00
12GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
13GO:0030794: (S)-coclaurine-N-methyltransferase activity0.00E+00
14GO:0030504: inorganic diphosphate transmembrane transporter activity0.00E+00
15GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
16GO:0009673: low-affinity phosphate transmembrane transporter activity0.00E+00
17GO:0045550: geranylgeranyl reductase activity0.00E+00
18GO:0018708: thiol S-methyltransferase activity3.07E-06
19GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity3.07E-06
20GO:0004373: glycogen (starch) synthase activity1.11E-05
21GO:0004565: beta-galactosidase activity3.88E-05
22GO:0009011: starch synthase activity4.54E-05
23GO:0004332: fructose-bisphosphate aldolase activity1.05E-04
24GO:0019899: enzyme binding1.90E-04
25GO:0008242: omega peptidase activity2.57E-04
26GO:0010313: phytochrome binding2.57E-04
27GO:0008746: NAD(P)+ transhydrogenase activity2.57E-04
28GO:0035671: enone reductase activity2.57E-04
29GO:0046906: tetrapyrrole binding2.57E-04
30GO:0004451: isocitrate lyase activity2.57E-04
31GO:0090422: thiamine pyrophosphate transporter activity2.57E-04
32GO:0004013: adenosylhomocysteinase activity2.57E-04
33GO:0008568: microtubule-severing ATPase activity2.57E-04
34GO:0071949: FAD binding3.60E-04
35GO:0016491: oxidoreductase activity5.43E-04
36GO:0005353: fructose transmembrane transporter activity5.68E-04
37GO:0005464: UDP-xylose transmembrane transporter activity5.68E-04
38GO:0034722: gamma-glutamyl-peptidase activity5.68E-04
39GO:0036381: pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity5.68E-04
40GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity5.68E-04
41GO:0008883: glutamyl-tRNA reductase activity5.68E-04
42GO:0047746: chlorophyllase activity5.68E-04
43GO:0010297: heteropolysaccharide binding5.68E-04
44GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity5.68E-04
45GO:0004047: aminomethyltransferase activity5.68E-04
46GO:0033201: alpha-1,4-glucan synthase activity5.68E-04
47GO:0008479: queuine tRNA-ribosyltransferase activity5.68E-04
48GO:0005315: inorganic phosphate transmembrane transporter activity7.47E-04
49GO:0016992: lipoate synthase activity9.22E-04
50GO:0003935: GTP cyclohydrolase II activity9.22E-04
51GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity9.22E-04
52GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity9.22E-04
53GO:0071917: triose-phosphate transmembrane transporter activity9.22E-04
54GO:0019948: SUMO activating enzyme activity9.22E-04
55GO:0010277: chlorophyllide a oxygenase [overall] activity9.22E-04
56GO:0004445: inositol-polyphosphate 5-phosphatase activity1.32E-03
57GO:0022890: inorganic cation transmembrane transporter activity1.32E-03
58GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.32E-03
59GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.32E-03
60GO:0048027: mRNA 5'-UTR binding1.32E-03
61GO:0042802: identical protein binding1.49E-03
62GO:0051287: NAD binding1.55E-03
63GO:0008878: glucose-1-phosphate adenylyltransferase activity1.76E-03
64GO:0015098: molybdate ion transmembrane transporter activity1.76E-03
65GO:0043495: protein anchor1.76E-03
66GO:0015120: phosphoglycerate transmembrane transporter activity1.76E-03
67GO:0001053: plastid sigma factor activity1.76E-03
68GO:0016987: sigma factor activity1.76E-03
69GO:0008168: methyltransferase activity1.91E-03
70GO:0047134: protein-disulfide reductase activity1.95E-03
71GO:0045300: acyl-[acyl-carrier-protein] desaturase activity2.25E-03
72GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen2.25E-03
73GO:0004791: thioredoxin-disulfide reductase activity2.43E-03
74GO:0004029: aldehyde dehydrogenase (NAD) activity2.77E-03
75GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity2.77E-03
76GO:0035673: oligopeptide transmembrane transporter activity2.77E-03
77GO:0042578: phosphoric ester hydrolase activity2.77E-03
78GO:0016615: malate dehydrogenase activity2.77E-03
79GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.18E-03
80GO:0030060: L-malate dehydrogenase activity3.33E-03
81GO:0004849: uridine kinase activity3.33E-03
82GO:0005375: copper ion transmembrane transporter activity5.22E-03
83GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water5.22E-03
84GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism5.92E-03
85GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity6.64E-03
86GO:0030234: enzyme regulator activity7.40E-03
87GO:0050661: NADP binding7.59E-03
88GO:0015386: potassium:proton antiporter activity8.19E-03
89GO:0015198: oligopeptide transporter activity9.00E-03
90GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity9.00E-03
91GO:0051537: 2 iron, 2 sulfur cluster binding9.29E-03
92GO:0015293: symporter activity9.66E-03
93GO:0031072: heat shock protein binding9.85E-03
94GO:0005515: protein binding1.01E-02
95GO:0051119: sugar transmembrane transporter activity1.16E-02
96GO:0005528: FK506 binding1.35E-02
97GO:0015079: potassium ion transmembrane transporter activity1.45E-02
98GO:0052689: carboxylic ester hydrolase activity1.46E-02
99GO:0015035: protein disulfide oxidoreductase activity1.70E-02
100GO:0016760: cellulose synthase (UDP-forming) activity1.76E-02
101GO:0022891: substrate-specific transmembrane transporter activity1.76E-02
102GO:0008810: cellulase activity1.76E-02
103GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen1.78E-02
104GO:0003727: single-stranded RNA binding1.86E-02
105GO:0008514: organic anion transmembrane transporter activity1.86E-02
106GO:0005507: copper ion binding2.06E-02
107GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.20E-02
108GO:0008080: N-acetyltransferase activity2.20E-02
109GO:0015299: solute:proton antiporter activity2.32E-02
110GO:0050662: coenzyme binding2.32E-02
111GO:0004872: receptor activity2.43E-02
112GO:0015144: carbohydrate transmembrane transporter activity2.48E-02
113GO:0008565: protein transporter activity2.48E-02
114GO:0016762: xyloglucan:xyloglucosyl transferase activity2.56E-02
115GO:0048038: quinone binding2.56E-02
116GO:0046910: pectinesterase inhibitor activity2.67E-02
117GO:0004518: nuclease activity2.68E-02
118GO:0015297: antiporter activity2.74E-02
119GO:0005351: sugar:proton symporter activity2.80E-02
120GO:0016791: phosphatase activity2.93E-02
121GO:0016759: cellulose synthase activity2.93E-02
122GO:0008483: transaminase activity3.06E-02
123GO:0016722: oxidoreductase activity, oxidizing metal ions3.06E-02
124GO:0005506: iron ion binding3.37E-02
125GO:0016168: chlorophyll binding3.46E-02
126GO:0042626: ATPase activity, coupled to transmembrane movement of substances3.64E-02
127GO:0004721: phosphoprotein phosphatase activity3.73E-02
128GO:0016798: hydrolase activity, acting on glycosyl bonds3.73E-02
129GO:0008757: S-adenosylmethionine-dependent methyltransferase activity3.87E-02
130GO:0030145: manganese ion binding4.45E-02
131GO:0003746: translation elongation factor activity4.75E-02
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Gene type



Gene DE type