Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G48070

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006429: leucyl-tRNA aminoacylation0.00E+00
2GO:1905421: regulation of plant organ morphogenesis0.00E+00
3GO:0030155: regulation of cell adhesion0.00E+00
4GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
5GO:0090071: negative regulation of ribosome biogenesis0.00E+00
6GO:0046460: neutral lipid biosynthetic process0.00E+00
7GO:0044249: cellular biosynthetic process0.00E+00
8GO:0031116: positive regulation of microtubule polymerization0.00E+00
9GO:0090042: tubulin deacetylation0.00E+00
10GO:0042817: pyridoxal metabolic process0.00E+00
11GO:0009658: chloroplast organization3.01E-07
12GO:0009734: auxin-activated signaling pathway1.82E-06
13GO:1900871: chloroplast mRNA modification6.16E-06
14GO:0040008: regulation of growth7.32E-06
15GO:0009657: plastid organization1.91E-05
16GO:0009733: response to auxin2.64E-05
17GO:0016556: mRNA modification4.74E-05
18GO:0010027: thylakoid membrane organization1.02E-04
19GO:0042793: transcription from plastid promoter1.88E-04
20GO:0006418: tRNA aminoacylation for protein translation1.98E-04
21GO:0048528: post-embryonic root development3.30E-04
22GO:0006419: alanyl-tRNA aminoacylation3.70E-04
23GO:2000025: regulation of leaf formation3.70E-04
24GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process3.70E-04
25GO:0000476: maturation of 4.5S rRNA3.70E-04
26GO:0000967: rRNA 5'-end processing3.70E-04
27GO:0051418: microtubule nucleation by microtubule organizing center3.70E-04
28GO:0070509: calcium ion import3.70E-04
29GO:0006438: valyl-tRNA aminoacylation3.70E-04
30GO:0019478: D-amino acid catabolic process3.70E-04
31GO:0042371: vitamin K biosynthetic process3.70E-04
32GO:0006436: tryptophanyl-tRNA aminoacylation3.70E-04
33GO:0034080: CENP-A containing nucleosome assembly3.70E-04
34GO:1902458: positive regulation of stomatal opening3.70E-04
35GO:0046620: regulation of organ growth4.14E-04
36GO:0000373: Group II intron splicing6.07E-04
37GO:1900865: chloroplast RNA modification7.16E-04
38GO:0034470: ncRNA processing8.05E-04
39GO:0006739: NADP metabolic process8.05E-04
40GO:0033566: gamma-tubulin complex localization8.05E-04
41GO:0060359: response to ammonium ion8.05E-04
42GO:0018026: peptidyl-lysine monomethylation8.05E-04
43GO:0009220: pyrimidine ribonucleotide biosynthetic process8.05E-04
44GO:0001682: tRNA 5'-leader removal8.05E-04
45GO:1903426: regulation of reactive oxygen species biosynthetic process8.05E-04
46GO:2000012: regulation of auxin polar transport1.24E-03
47GO:0045910: negative regulation of DNA recombination1.30E-03
48GO:0048281: inflorescence morphogenesis1.30E-03
49GO:0006954: inflammatory response1.30E-03
50GO:0001578: microtubule bundle formation1.30E-03
51GO:0006760: folic acid-containing compound metabolic process1.30E-03
52GO:0043157: response to cation stress1.30E-03
53GO:0005977: glycogen metabolic process1.30E-03
54GO:0007052: mitotic spindle organization1.30E-03
55GO:0010207: photosystem II assembly1.40E-03
56GO:0010020: chloroplast fission1.40E-03
57GO:0071732: cellular response to nitric oxide1.57E-03
58GO:0009790: embryo development1.82E-03
59GO:0010239: chloroplast mRNA processing1.88E-03
60GO:0009226: nucleotide-sugar biosynthetic process1.88E-03
61GO:0090307: mitotic spindle assembly1.88E-03
62GO:0008615: pyridoxine biosynthetic process1.88E-03
63GO:0007275: multicellular organism development1.88E-03
64GO:0010148: transpiration1.88E-03
65GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center1.88E-03
66GO:0034508: centromere complex assembly1.88E-03
67GO:0009926: auxin polar transport2.40E-03
68GO:0051322: anaphase2.52E-03
69GO:0022622: root system development2.52E-03
70GO:0046656: folic acid biosynthetic process2.52E-03
71GO:0007020: microtubule nucleation2.52E-03
72GO:0006734: NADH metabolic process2.52E-03
73GO:0044205: 'de novo' UMP biosynthetic process2.52E-03
74GO:0010021: amylopectin biosynthetic process2.52E-03
75GO:0006730: one-carbon metabolic process2.57E-03
76GO:0005975: carbohydrate metabolic process2.79E-03
77GO:0071369: cellular response to ethylene stimulus2.80E-03
78GO:0009793: embryo development ending in seed dormancy2.85E-03
79GO:0010158: abaxial cell fate specification3.23E-03
80GO:0046785: microtubule polymerization3.23E-03
81GO:0032543: mitochondrial translation3.23E-03
82GO:0010236: plastoquinone biosynthetic process3.23E-03
83GO:0045038: protein import into chloroplast thylakoid membrane3.23E-03
84GO:0000278: mitotic cell cycle3.23E-03
85GO:0009107: lipoate biosynthetic process3.23E-03
86GO:0008033: tRNA processing3.57E-03
87GO:0009959: negative gravitropism3.99E-03
88GO:0006655: phosphatidylglycerol biosynthetic process3.99E-03
89GO:0016554: cytidine to uridine editing3.99E-03
90GO:0032973: amino acid export3.99E-03
91GO:0050665: hydrogen peroxide biosynthetic process3.99E-03
92GO:0009648: photoperiodism4.81E-03
93GO:0019509: L-methionine salvage from methylthioadenosine4.81E-03
94GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity4.81E-03
95GO:0042372: phylloquinone biosynthetic process4.81E-03
96GO:0034389: lipid particle organization4.81E-03
97GO:0017148: negative regulation of translation4.81E-03
98GO:0009942: longitudinal axis specification4.81E-03
99GO:1901259: chloroplast rRNA processing4.81E-03
100GO:0046654: tetrahydrofolate biosynthetic process4.81E-03
101GO:0009854: oxidative photosynthetic carbon pathway4.81E-03
102GO:0080086: stamen filament development4.81E-03
103GO:0009630: gravitropism5.07E-03
104GO:0071281: cellular response to iron ion5.40E-03
105GO:0009772: photosynthetic electron transport in photosystem II5.68E-03
106GO:0043090: amino acid import5.68E-03
107GO:0070370: cellular heat acclimation5.68E-03
108GO:0010050: vegetative phase change5.68E-03
109GO:0010196: nonphotochemical quenching5.68E-03
110GO:0006400: tRNA modification5.68E-03
111GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process5.68E-03
112GO:0030307: positive regulation of cell growth5.68E-03
113GO:0010103: stomatal complex morphogenesis5.68E-03
114GO:0032880: regulation of protein localization5.68E-03
115GO:0048564: photosystem I assembly6.61E-03
116GO:0009850: auxin metabolic process6.61E-03
117GO:0006353: DNA-templated transcription, termination6.61E-03
118GO:0070413: trehalose metabolism in response to stress6.61E-03
119GO:2000070: regulation of response to water deprivation6.61E-03
120GO:0000105: histidine biosynthetic process6.61E-03
121GO:0009932: cell tip growth7.58E-03
122GO:0001558: regulation of cell growth7.58E-03
123GO:0006526: arginine biosynthetic process7.58E-03
124GO:0010204: defense response signaling pathway, resistance gene-independent7.58E-03
125GO:0032544: plastid translation7.58E-03
126GO:0007389: pattern specification process7.58E-03
127GO:0006098: pentose-phosphate shunt8.60E-03
128GO:0080144: amino acid homeostasis8.60E-03
129GO:0019432: triglyceride biosynthetic process8.60E-03
130GO:0007346: regulation of mitotic cell cycle9.67E-03
131GO:0031425: chloroplast RNA processing9.67E-03
132GO:0006949: syncytium formation1.08E-02
133GO:0006259: DNA metabolic process1.08E-02
134GO:0006535: cysteine biosynthetic process from serine1.08E-02
135GO:0006298: mismatch repair1.08E-02
136GO:0009451: RNA modification1.14E-02
137GO:0010015: root morphogenesis1.19E-02
138GO:0006265: DNA topological change1.19E-02
139GO:0009073: aromatic amino acid family biosynthetic process1.19E-02
140GO:0006415: translational termination1.19E-02
141GO:0016024: CDP-diacylglycerol biosynthetic process1.32E-02
142GO:0045037: protein import into chloroplast stroma1.32E-02
143GO:0010582: floral meristem determinacy1.32E-02
144GO:0006094: gluconeogenesis1.44E-02
145GO:0009691: cytokinin biosynthetic process1.44E-02
146GO:0009965: leaf morphogenesis1.66E-02
147GO:0090351: seedling development1.70E-02
148GO:0070588: calcium ion transmembrane transport1.70E-02
149GO:0000162: tryptophan biosynthetic process1.84E-02
150GO:0042023: DNA endoreduplication1.84E-02
151GO:0006071: glycerol metabolic process1.84E-02
152GO:0009664: plant-type cell wall organization1.85E-02
153GO:0042254: ribosome biogenesis1.97E-02
154GO:0019344: cysteine biosynthetic process1.98E-02
155GO:0009116: nucleoside metabolic process1.98E-02
156GO:0009944: polarity specification of adaxial/abaxial axis1.98E-02
157GO:0030150: protein import into mitochondrial matrix1.98E-02
158GO:0005992: trehalose biosynthetic process1.98E-02
159GO:0006364: rRNA processing1.99E-02
160GO:0051603: proteolysis involved in cellular protein catabolic process2.06E-02
161GO:0051302: regulation of cell division2.12E-02
162GO:0016575: histone deacetylation2.12E-02
163GO:0043622: cortical microtubule organization2.12E-02
164GO:0016998: cell wall macromolecule catabolic process2.27E-02
165GO:0015992: proton transport2.27E-02
166GO:0016226: iron-sulfur cluster assembly2.42E-02
167GO:0031348: negative regulation of defense response2.42E-02
168GO:0080167: response to karrikin2.53E-02
169GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.58E-02
170GO:0010082: regulation of root meristem growth2.58E-02
171GO:0009686: gibberellin biosynthetic process2.58E-02
172GO:0001944: vasculature development2.58E-02
173GO:0009306: protein secretion2.73E-02
174GO:0071555: cell wall organization2.77E-02
175GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.90E-02
176GO:0008284: positive regulation of cell proliferation2.90E-02
177GO:0048653: anther development3.06E-02
178GO:0000226: microtubule cytoskeleton organization3.06E-02
179GO:0009741: response to brassinosteroid3.23E-02
180GO:0010268: brassinosteroid homeostasis3.23E-02
181GO:0009958: positive gravitropism3.23E-02
182GO:0006662: glycerol ether metabolic process3.23E-02
183GO:0048868: pollen tube development3.23E-02
184GO:0007059: chromosome segregation3.40E-02
185GO:0006508: proteolysis3.42E-02
186GO:0019252: starch biosynthetic process3.57E-02
187GO:0008654: phospholipid biosynthetic process3.57E-02
188GO:0048510: regulation of timing of transition from vegetative to reproductive phase3.75E-02
189GO:0000302: response to reactive oxygen species3.75E-02
190GO:0016132: brassinosteroid biosynthetic process3.75E-02
191GO:0010583: response to cyclopentenone3.93E-02
192GO:1901657: glycosyl compound metabolic process4.11E-02
193GO:0016125: sterol metabolic process4.30E-02
194GO:0010252: auxin homeostasis4.30E-02
195GO:0006464: cellular protein modification process4.30E-02
196GO:0009828: plant-type cell wall loosening4.30E-02
197GO:0071805: potassium ion transmembrane transport4.49E-02
198GO:0000910: cytokinesis4.68E-02
199GO:0001666: response to hypoxia4.87E-02
200GO:0009911: positive regulation of flower development4.87E-02
RankGO TermAdjusted P value
1GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
2GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
3GO:0051721: protein phosphatase 2A binding0.00E+00
4GO:0042903: tubulin deacetylase activity0.00E+00
5GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
6GO:0046523: S-methyl-5-thioribose-1-phosphate isomerase activity0.00E+00
7GO:0043014: alpha-tubulin binding0.00E+00
8GO:0004823: leucine-tRNA ligase activity0.00E+00
9GO:0015267: channel activity0.00E+00
10GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
11GO:0004358: glutamate N-acetyltransferase activity0.00E+00
12GO:0004326: tetrahydrofolylpolyglutamate synthase activity6.16E-06
13GO:0004519: endonuclease activity2.17E-04
14GO:0004812: aminoacyl-tRNA ligase activity3.61E-04
15GO:0005227: calcium activated cation channel activity3.70E-04
16GO:0004733: pyridoxamine-phosphate oxidase activity3.70E-04
17GO:0051777: ent-kaurenoate oxidase activity3.70E-04
18GO:0004813: alanine-tRNA ligase activity3.70E-04
19GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity3.70E-04
20GO:0052381: tRNA dimethylallyltransferase activity3.70E-04
21GO:0052856: NADHX epimerase activity3.70E-04
22GO:0004832: valine-tRNA ligase activity3.70E-04
23GO:0052857: NADPHX epimerase activity3.70E-04
24GO:0004830: tryptophan-tRNA ligase activity3.70E-04
25GO:0043621: protein self-association4.25E-04
26GO:0009977: proton motive force dependent protein transmembrane transporter activity8.05E-04
27GO:0016415: octanoyltransferase activity8.05E-04
28GO:0004047: aminomethyltransferase activity8.05E-04
29GO:0102083: 7,8-dihydromonapterin aldolase activity8.05E-04
30GO:0061575: cyclin-dependent protein serine/threonine kinase activator activity8.05E-04
31GO:0019156: isoamylase activity8.05E-04
32GO:0004150: dihydroneopterin aldolase activity8.05E-04
33GO:0017118: lipoyltransferase activity8.05E-04
34GO:0070330: aromatase activity1.30E-03
35GO:0002161: aminoacyl-tRNA editing activity1.30E-03
36GO:0004557: alpha-galactosidase activity1.30E-03
37GO:0052692: raffinose alpha-galactosidase activity1.30E-03
38GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity1.88E-03
39GO:0001872: (1->3)-beta-D-glucan binding1.88E-03
40GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity1.88E-03
41GO:0009678: hydrogen-translocating pyrophosphatase activity1.88E-03
42GO:0048487: beta-tubulin binding1.88E-03
43GO:0016149: translation release factor activity, codon specific1.88E-03
44GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity1.88E-03
45GO:0043023: ribosomal large subunit binding1.88E-03
46GO:0004176: ATP-dependent peptidase activity2.35E-03
47GO:0004045: aminoacyl-tRNA hydrolase activity2.52E-03
48GO:0043015: gamma-tubulin binding2.52E-03
49GO:0019199: transmembrane receptor protein kinase activity2.52E-03
50GO:0042277: peptide binding2.52E-03
51GO:0008891: glycolate oxidase activity2.52E-03
52GO:0004659: prenyltransferase activity2.52E-03
53GO:0016279: protein-lysine N-methyltransferase activity2.52E-03
54GO:0018685: alkane 1-monooxygenase activity3.23E-03
55GO:0070696: transmembrane receptor protein serine/threonine kinase binding3.23E-03
56GO:0030983: mismatched DNA binding3.99E-03
57GO:0004605: phosphatidate cytidylyltransferase activity3.99E-03
58GO:0080030: methyl indole-3-acetate esterase activity3.99E-03
59GO:0004332: fructose-bisphosphate aldolase activity3.99E-03
60GO:0004526: ribonuclease P activity3.99E-03
61GO:0004556: alpha-amylase activity3.99E-03
62GO:0010181: FMN binding4.13E-03
63GO:0004124: cysteine synthase activity4.81E-03
64GO:0008195: phosphatidate phosphatase activity4.81E-03
65GO:0004144: diacylglycerol O-acyltransferase activity4.81E-03
66GO:0004427: inorganic diphosphatase activity5.68E-03
67GO:0003684: damaged DNA binding5.75E-03
68GO:0003723: RNA binding5.96E-03
69GO:0008237: metallopeptidase activity6.11E-03
70GO:0043022: ribosome binding6.61E-03
71GO:0019843: rRNA binding7.34E-03
72GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)7.58E-03
73GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity7.58E-03
74GO:0016829: lyase activity8.11E-03
75GO:0003747: translation release factor activity8.60E-03
76GO:0009672: auxin:proton symporter activity9.67E-03
77GO:0004805: trehalose-phosphatase activity1.08E-02
78GO:0042393: histone binding1.30E-02
79GO:0000049: tRNA binding1.32E-02
80GO:0005262: calcium channel activity1.44E-02
81GO:0004565: beta-galactosidase activity1.44E-02
82GO:0010329: auxin efflux transmembrane transporter activity1.44E-02
83GO:0015266: protein channel activity1.44E-02
84GO:0004185: serine-type carboxypeptidase activity1.47E-02
85GO:0008083: growth factor activity1.57E-02
86GO:0004535: poly(A)-specific ribonuclease activity1.57E-02
87GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.57E-02
88GO:0003887: DNA-directed DNA polymerase activity1.84E-02
89GO:0016788: hydrolase activity, acting on ester bonds1.97E-02
90GO:0004407: histone deacetylase activity1.98E-02
91GO:0043130: ubiquitin binding1.98E-02
92GO:0015079: potassium ion transmembrane transporter activity2.12E-02
93GO:0016887: ATPase activity2.21E-02
94GO:0008408: 3'-5' exonuclease activity2.27E-02
95GO:0030570: pectate lyase activity2.58E-02
96GO:0004650: polygalacturonase activity2.59E-02
97GO:0047134: protein-disulfide reductase activity2.90E-02
98GO:0004527: exonuclease activity3.23E-02
99GO:0004791: thioredoxin-disulfide reductase activity3.40E-02
100GO:0016853: isomerase activity3.40E-02
101GO:0019901: protein kinase binding3.57E-02
102GO:0016762: xyloglucan:xyloglucosyl transferase activity3.75E-02
103GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds4.05E-02
104GO:0000156: phosphorelay response regulator activity4.11E-02
105GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.11E-02
106GO:0016791: phosphatase activity4.30E-02
107GO:0016597: amino acid binding4.68E-02
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Gene type



Gene DE type