Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G46660

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0045184: establishment of protein localization0.00E+00
2GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
3GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
4GO:0010422: regulation of brassinosteroid biosynthetic process0.00E+00
5GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
6GO:0007638: mechanosensory behavior0.00E+00
7GO:1903224: regulation of endodermal cell differentiation0.00E+00
8GO:0009657: plastid organization8.38E-06
9GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.57E-05
10GO:0009451: RNA modification2.30E-05
11GO:0009658: chloroplast organization6.75E-05
12GO:0048437: floral organ development1.99E-04
13GO:0009793: embryo development ending in seed dormancy2.45E-04
14GO:0010063: positive regulation of trichoblast fate specification2.65E-04
15GO:0010480: microsporocyte differentiation2.65E-04
16GO:0042759: long-chain fatty acid biosynthetic process2.65E-04
17GO:0034971: histone H3-R17 methylation2.65E-04
18GO:0035987: endodermal cell differentiation2.65E-04
19GO:0006436: tryptophanyl-tRNA aminoacylation2.65E-04
20GO:0010342: endosperm cellularization2.65E-04
21GO:0034757: negative regulation of iron ion transport2.65E-04
22GO:0034970: histone H3-R2 methylation2.65E-04
23GO:0042659: regulation of cell fate specification2.65E-04
24GO:0034972: histone H3-R26 methylation2.65E-04
25GO:0070509: calcium ion import2.65E-04
26GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic2.65E-04
27GO:0090558: plant epidermis development2.65E-04
28GO:0010583: response to cyclopentenone3.35E-04
29GO:0000902: cell morphogenesis3.74E-04
30GO:0000910: cytokinesis4.63E-04
31GO:0009662: etioplast organization5.83E-04
32GO:0048439: flower morphogenesis5.83E-04
33GO:1904143: positive regulation of carotenoid biosynthetic process5.83E-04
34GO:0009786: regulation of asymmetric cell division5.83E-04
35GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine5.83E-04
36GO:2000123: positive regulation of stomatal complex development5.83E-04
37GO:0010254: nectary development5.83E-04
38GO:0060359: response to ammonium ion5.83E-04
39GO:1900871: chloroplast mRNA modification5.83E-04
40GO:0048255: mRNA stabilization5.83E-04
41GO:1902326: positive regulation of chlorophyll biosynthetic process5.83E-04
42GO:0010271: regulation of chlorophyll catabolic process5.83E-04
43GO:0010434: bract formation5.83E-04
44GO:0048229: gametophyte development5.99E-04
45GO:0000160: phosphorelay signal transduction system7.43E-04
46GO:0042780: tRNA 3'-end processing9.47E-04
47GO:0001578: microtubule bundle formation9.47E-04
48GO:0043157: response to cation stress9.47E-04
49GO:0009954: proximal/distal pattern formation9.47E-04
50GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic9.47E-04
51GO:0045910: negative regulation of DNA recombination9.47E-04
52GO:0090708: specification of plant organ axis polarity9.47E-04
53GO:0080117: secondary growth9.47E-04
54GO:0070588: calcium ion transmembrane transport9.75E-04
55GO:0009944: polarity specification of adaxial/abaxial axis1.20E-03
56GO:0006418: tRNA aminoacylation for protein translation1.32E-03
57GO:2000904: regulation of starch metabolic process1.35E-03
58GO:0031048: chromatin silencing by small RNA1.35E-03
59GO:0051289: protein homotetramerization1.35E-03
60GO:0009558: embryo sac cellularization1.35E-03
61GO:1902476: chloride transmembrane transport1.35E-03
62GO:0010071: root meristem specification1.35E-03
63GO:0051513: regulation of monopolar cell growth1.35E-03
64GO:0007231: osmosensory signaling pathway1.35E-03
65GO:0010239: chloroplast mRNA processing1.35E-03
66GO:0044211: CTP salvage1.35E-03
67GO:0019048: modulation by virus of host morphology or physiology1.35E-03
68GO:0046739: transport of virus in multicellular host1.35E-03
69GO:0051567: histone H3-K9 methylation1.81E-03
70GO:0044206: UMP salvage1.81E-03
71GO:0006479: protein methylation1.81E-03
72GO:0051322: anaphase1.81E-03
73GO:0030104: water homeostasis1.81E-03
74GO:0033500: carbohydrate homeostasis1.81E-03
75GO:0000914: phragmoplast assembly1.81E-03
76GO:2000038: regulation of stomatal complex development1.81E-03
77GO:0009736: cytokinin-activated signaling pathway1.87E-03
78GO:0006544: glycine metabolic process2.31E-03
79GO:0048497: maintenance of floral organ identity2.31E-03
80GO:1902183: regulation of shoot apical meristem development2.31E-03
81GO:0010375: stomatal complex patterning2.31E-03
82GO:0016131: brassinosteroid metabolic process2.31E-03
83GO:0009646: response to absence of light2.53E-03
84GO:0006206: pyrimidine nucleobase metabolic process2.85E-03
85GO:0018258: protein O-linked glycosylation via hydroxyproline2.85E-03
86GO:0016458: gene silencing2.85E-03
87GO:0009228: thiamine biosynthetic process2.85E-03
88GO:0006563: L-serine metabolic process2.85E-03
89GO:0010405: arabinogalactan protein metabolic process2.85E-03
90GO:0009959: negative gravitropism2.85E-03
91GO:0009913: epidermal cell differentiation2.85E-03
92GO:0006655: phosphatidylglycerol biosynthetic process2.85E-03
93GO:0016554: cytidine to uridine editing2.85E-03
94GO:0042793: transcription from plastid promoter2.85E-03
95GO:0048831: regulation of shoot system development2.85E-03
96GO:0045962: positive regulation of development, heterochronic2.85E-03
97GO:0006468: protein phosphorylation3.00E-03
98GO:0032502: developmental process3.10E-03
99GO:0009942: longitudinal axis specification3.43E-03
100GO:0048509: regulation of meristem development3.43E-03
101GO:1901259: chloroplast rRNA processing3.43E-03
102GO:0009099: valine biosynthetic process3.43E-03
103GO:0030488: tRNA methylation3.43E-03
104GO:2000067: regulation of root morphogenesis3.43E-03
105GO:0009082: branched-chain amino acid biosynthetic process3.43E-03
106GO:0009828: plant-type cell wall loosening3.51E-03
107GO:0051607: defense response to virus3.96E-03
108GO:0010444: guard mother cell differentiation4.04E-03
109GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway4.04E-03
110GO:0006955: immune response4.04E-03
111GO:0048528: post-embryonic root development4.04E-03
112GO:0006821: chloride transport4.04E-03
113GO:0030162: regulation of proteolysis4.69E-03
114GO:0070413: trehalose metabolism in response to stress4.69E-03
115GO:0055075: potassium ion homeostasis4.69E-03
116GO:0048564: photosystem I assembly4.69E-03
117GO:0001522: pseudouridine synthesis4.69E-03
118GO:0009790: embryo development4.75E-03
119GO:0010411: xyloglucan metabolic process4.93E-03
120GO:0010497: plasmodesmata-mediated intercellular transport5.37E-03
121GO:0009097: isoleucine biosynthetic process5.37E-03
122GO:0007389: pattern specification process5.37E-03
123GO:0009827: plant-type cell wall modification5.37E-03
124GO:0010052: guard cell differentiation5.37E-03
125GO:0048481: plant ovule development5.46E-03
126GO:0048364: root development5.75E-03
127GO:0000373: Group II intron splicing6.09E-03
128GO:0006098: pentose-phosphate shunt6.09E-03
129GO:2000024: regulation of leaf development6.09E-03
130GO:0031425: chloroplast RNA processing6.83E-03
131GO:0009638: phototropism6.83E-03
132GO:0035999: tetrahydrofolate interconversion6.83E-03
133GO:2000280: regulation of root development6.83E-03
134GO:1900865: chloroplast RNA modification6.83E-03
135GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway6.83E-03
136GO:0007166: cell surface receptor signaling pathway6.97E-03
137GO:0009688: abscisic acid biosynthetic process7.61E-03
138GO:0030422: production of siRNA involved in RNA interference7.61E-03
139GO:0048829: root cap development7.61E-03
140GO:0009641: shade avoidance7.61E-03
141GO:0006298: mismatch repair7.61E-03
142GO:0006949: syncytium formation7.61E-03
143GO:0006259: DNA metabolic process7.61E-03
144GO:0006816: calcium ion transport8.42E-03
145GO:0006265: DNA topological change8.42E-03
146GO:0009089: lysine biosynthetic process via diaminopimelate8.42E-03
147GO:0016024: CDP-diacylglycerol biosynthetic process9.26E-03
148GO:0045037: protein import into chloroplast stroma9.26E-03
149GO:0010582: floral meristem determinacy9.26E-03
150GO:0042546: cell wall biogenesis9.30E-03
151GO:0009785: blue light signaling pathway1.01E-02
152GO:0050826: response to freezing1.01E-02
153GO:0010075: regulation of meristem growth1.01E-02
154GO:0006094: gluconeogenesis1.01E-02
155GO:0009767: photosynthetic electron transport chain1.01E-02
156GO:0009934: regulation of meristem structural organization1.10E-02
157GO:0010207: photosystem II assembly1.10E-02
158GO:0009664: plant-type cell wall organization1.12E-02
159GO:0080188: RNA-directed DNA methylation1.20E-02
160GO:0006508: proteolysis1.22E-02
161GO:0051603: proteolysis involved in cellular protein catabolic process1.25E-02
162GO:0006833: water transport1.29E-02
163GO:0009416: response to light stimulus1.29E-02
164GO:0010025: wax biosynthetic process1.29E-02
165GO:0009909: regulation of flower development1.34E-02
166GO:0080167: response to karrikin1.35E-02
167GO:0005992: trehalose biosynthetic process1.39E-02
168GO:0048367: shoot system development1.48E-02
169GO:0006825: copper ion transport1.49E-02
170GO:0051302: regulation of cell division1.49E-02
171GO:0019953: sexual reproduction1.49E-02
172GO:0016998: cell wall macromolecule catabolic process1.59E-02
173GO:0006306: DNA methylation1.59E-02
174GO:0009553: embryo sac development1.67E-02
175GO:0010227: floral organ abscission1.81E-02
176GO:0010082: regulation of root meristem growth1.81E-02
177GO:0071215: cellular response to abscisic acid stimulus1.81E-02
178GO:0009742: brassinosteroid mediated signaling pathway1.83E-02
179GO:0009306: protein secretion1.92E-02
180GO:0006284: base-excision repair1.92E-02
181GO:0042127: regulation of cell proliferation1.92E-02
182GO:0070417: cellular response to cold2.03E-02
183GO:0010087: phloem or xylem histogenesis2.15E-02
184GO:0048653: anther development2.15E-02
185GO:0000226: microtubule cytoskeleton organization2.15E-02
186GO:0006662: glycerol ether metabolic process2.26E-02
187GO:0010305: leaf vascular tissue pattern formation2.26E-02
188GO:0048868: pollen tube development2.26E-02
189GO:0006342: chromatin silencing2.26E-02
190GO:0009741: response to brassinosteroid2.26E-02
191GO:0009058: biosynthetic process2.28E-02
192GO:0007018: microtubule-based movement2.38E-02
193GO:0007059: chromosome segregation2.38E-02
194GO:0008654: phospholipid biosynthetic process2.51E-02
195GO:0009851: auxin biosynthetic process2.51E-02
196GO:0048825: cotyledon development2.51E-02
197GO:0016132: brassinosteroid biosynthetic process2.63E-02
198GO:0000302: response to reactive oxygen species2.63E-02
199GO:0009630: gravitropism2.76E-02
200GO:0040008: regulation of growth2.85E-02
201GO:0009567: double fertilization forming a zygote and endosperm3.02E-02
202GO:0010252: auxin homeostasis3.02E-02
203GO:0007267: cell-cell signaling3.15E-02
204GO:0071805: potassium ion transmembrane transport3.15E-02
205GO:0009739: response to gibberellin3.33E-02
206GO:0009734: auxin-activated signaling pathway3.38E-02
207GO:0010027: thylakoid membrane organization3.42E-02
208GO:0001666: response to hypoxia3.42E-02
209GO:0010029: regulation of seed germination3.56E-02
210GO:0009816: defense response to bacterium, incompatible interaction3.56E-02
211GO:0006974: cellular response to DNA damage stimulus3.70E-02
212GO:0010311: lateral root formation4.28E-02
213GO:0009813: flavonoid biosynthetic process4.28E-02
214GO:0009826: unidimensional cell growth4.43E-02
215GO:0009555: pollen development4.49E-02
216GO:0010119: regulation of stomatal movement4.58E-02
217GO:0006865: amino acid transport4.73E-02
RankGO TermAdjusted P value
1GO:0047661: amino-acid racemase activity0.00E+00
2GO:0004056: argininosuccinate lyase activity0.00E+00
3GO:0070009: serine-type aminopeptidase activity0.00E+00
4GO:0004519: endonuclease activity7.24E-06
5GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity2.65E-04
6GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity2.65E-04
7GO:0004160: dihydroxy-acid dehydratase activity2.65E-04
8GO:0004830: tryptophan-tRNA ligase activity2.65E-04
9GO:0010285: L,L-diaminopimelate aminotransferase activity2.65E-04
10GO:0042834: peptidoglycan binding2.65E-04
11GO:0016274: protein-arginine N-methyltransferase activity2.65E-04
12GO:0004008: copper-exporting ATPase activity2.65E-04
13GO:0009884: cytokinin receptor activity5.83E-04
14GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity5.83E-04
15GO:0035241: protein-arginine omega-N monomethyltransferase activity5.83E-04
16GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity5.83E-04
17GO:0005262: calcium channel activity7.76E-04
18GO:0005034: osmosensor activity9.47E-04
19GO:0008469: histone-arginine N-methyltransferase activity9.47E-04
20GO:0070330: aromatase activity9.47E-04
21GO:0017150: tRNA dihydrouridine synthase activity9.47E-04
22GO:0032549: ribonucleoside binding9.47E-04
23GO:0042781: 3'-tRNA processing endoribonuclease activity9.47E-04
24GO:0008017: microtubule binding1.18E-03
25GO:0035197: siRNA binding1.35E-03
26GO:0001872: (1->3)-beta-D-glucan binding1.35E-03
27GO:0005253: anion channel activity1.81E-03
28GO:0004845: uracil phosphoribosyltransferase activity1.81E-03
29GO:0016836: hydro-lyase activity1.81E-03
30GO:0004031: aldehyde oxidase activity1.81E-03
31GO:0050302: indole-3-acetaldehyde oxidase activity1.81E-03
32GO:0019199: transmembrane receptor protein kinase activity1.81E-03
33GO:0004812: aminoacyl-tRNA ligase activity2.03E-03
34GO:0008168: methyltransferase activity2.03E-03
35GO:0018685: alkane 1-monooxygenase activity2.31E-03
36GO:0008725: DNA-3-methyladenine glycosylase activity2.31E-03
37GO:0004372: glycine hydroxymethyltransferase activity2.31E-03
38GO:0005275: amine transmembrane transporter activity2.31E-03
39GO:0019901: protein kinase binding2.71E-03
40GO:0005247: voltage-gated chloride channel activity2.85E-03
41GO:0030983: mismatched DNA binding2.85E-03
42GO:0004605: phosphatidate cytidylyltransferase activity2.85E-03
43GO:1990714: hydroxyproline O-galactosyltransferase activity2.85E-03
44GO:0004332: fructose-bisphosphate aldolase activity2.85E-03
45GO:0016762: xyloglucan:xyloglucosyl transferase activity2.90E-03
46GO:0000156: phosphorelay response regulator activity3.30E-03
47GO:0019900: kinase binding3.43E-03
48GO:0008195: phosphatidate phosphatase activity3.43E-03
49GO:0004849: uridine kinase activity3.43E-03
50GO:0016798: hydrolase activity, acting on glycosyl bonds4.93E-03
51GO:0005375: copper ion transmembrane transporter activity5.37E-03
52GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity5.37E-03
53GO:0004675: transmembrane receptor protein serine/threonine kinase activity5.38E-03
54GO:0004674: protein serine/threonine kinase activity5.42E-03
55GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds5.62E-03
56GO:0009055: electron carrier activity6.00E-03
57GO:0004222: metalloendopeptidase activity6.03E-03
58GO:0005524: ATP binding6.09E-03
59GO:0016614: oxidoreductase activity, acting on CH-OH group of donors6.32E-03
60GO:0009672: auxin:proton symporter activity6.83E-03
61GO:0004673: protein histidine kinase activity7.61E-03
62GO:0004805: trehalose-phosphatase activity7.61E-03
63GO:0051539: 4 iron, 4 sulfur cluster binding7.90E-03
64GO:0001054: RNA polymerase I activity8.42E-03
65GO:0004185: serine-type carboxypeptidase activity8.94E-03
66GO:0004521: endoribonuclease activity9.26E-03
67GO:0010329: auxin efflux transmembrane transporter activity1.01E-02
68GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.01E-02
69GO:0031072: heat shock protein binding1.01E-02
70GO:0000155: phosphorelay sensor kinase activity1.01E-02
71GO:0009982: pseudouridine synthase activity1.01E-02
72GO:0050660: flavin adenine dinucleotide binding1.23E-02
73GO:0003777: microtubule motor activity1.34E-02
74GO:0043424: protein histidine kinase binding1.49E-02
75GO:0005345: purine nucleobase transmembrane transporter activity1.49E-02
76GO:0015079: potassium ion transmembrane transporter activity1.49E-02
77GO:0004176: ATP-dependent peptidase activity1.59E-02
78GO:0033612: receptor serine/threonine kinase binding1.59E-02
79GO:0008408: 3'-5' exonuclease activity1.59E-02
80GO:0003723: RNA binding1.70E-02
81GO:0042803: protein homodimerization activity1.80E-02
82GO:0047134: protein-disulfide reductase activity2.03E-02
83GO:0019843: rRNA binding2.16E-02
84GO:0005507: copper ion binding2.18E-02
85GO:0004527: exonuclease activity2.26E-02
86GO:0004672: protein kinase activity2.28E-02
87GO:0004791: thioredoxin-disulfide reductase activity2.38E-02
88GO:0050662: coenzyme binding2.38E-02
89GO:0030170: pyridoxal phosphate binding2.40E-02
90GO:0004252: serine-type endopeptidase activity2.40E-02
91GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.88E-02
92GO:0016791: phosphatase activity3.02E-02
93GO:0003684: damaged DNA binding3.02E-02
94GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity3.15E-02
95GO:0008237: metallopeptidase activity3.15E-02
96GO:0008483: transaminase activity3.15E-02
97GO:0016722: oxidoreductase activity, oxidizing metal ions3.15E-02
98GO:0016597: amino acid binding3.28E-02
99GO:0042802: identical protein binding3.78E-02
100GO:0016887: ATPase activity3.81E-02
101GO:0030247: polysaccharide binding3.84E-02
102GO:0008236: serine-type peptidase activity3.98E-02
103GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.13E-02
104GO:0003824: catalytic activity4.19E-02
105GO:0003746: translation elongation factor activity4.88E-02
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Gene type



Gene DE type