Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G46110

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
2GO:0042817: pyridoxal metabolic process0.00E+00
3GO:0009106: lipoate metabolic process0.00E+00
4GO:0090042: tubulin deacetylation0.00E+00
5GO:0071474: cellular hyperosmotic response0.00E+00
6GO:0006114: glycerol biosynthetic process0.00E+00
7GO:0018023: peptidyl-lysine trimethylation0.00E+00
8GO:0070125: mitochondrial translational elongation0.00E+00
9GO:0006429: leucyl-tRNA aminoacylation0.00E+00
10GO:0009249: protein lipoylation0.00E+00
11GO:0019685: photosynthesis, dark reaction0.00E+00
12GO:0002184: cytoplasmic translational termination0.00E+00
13GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
14GO:0017038: protein import0.00E+00
15GO:0046460: neutral lipid biosynthetic process0.00E+00
16GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
17GO:0090279: regulation of calcium ion import0.00E+00
18GO:0090470: shoot organ boundary specification0.00E+00
19GO:0031116: positive regulation of microtubule polymerization0.00E+00
20GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
21GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
22GO:0042820: vitamin B6 catabolic process0.00E+00
23GO:0042821: pyridoxal biosynthetic process0.00E+00
24GO:0042407: cristae formation0.00E+00
25GO:0071482: cellular response to light stimulus6.55E-07
26GO:0015995: chlorophyll biosynthetic process2.35E-05
27GO:0032544: plastid translation3.44E-05
28GO:2001141: regulation of RNA biosynthetic process7.23E-05
29GO:0006352: DNA-templated transcription, initiation9.96E-05
30GO:0005983: starch catabolic process1.23E-04
31GO:0010027: thylakoid membrane organization1.94E-04
32GO:0045038: protein import into chloroplast thylakoid membrane1.94E-04
33GO:0032543: mitochondrial translation1.94E-04
34GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.75E-04
35GO:1901259: chloroplast rRNA processing3.68E-04
36GO:0015671: oxygen transport4.73E-04
37GO:0042547: cell wall modification involved in multidimensional cell growth4.73E-04
38GO:0042371: vitamin K biosynthetic process4.73E-04
39GO:1902458: positive regulation of stomatal opening4.73E-04
40GO:0006747: FAD biosynthetic process4.73E-04
41GO:0000023: maltose metabolic process4.73E-04
42GO:0006419: alanyl-tRNA aminoacylation4.73E-04
43GO:0000476: maturation of 4.5S rRNA4.73E-04
44GO:0009443: pyridoxal 5'-phosphate salvage4.73E-04
45GO:0000967: rRNA 5'-end processing4.73E-04
46GO:0005980: glycogen catabolic process4.73E-04
47GO:0009658: chloroplast organization4.78E-04
48GO:0000105: histidine biosynthetic process5.91E-04
49GO:0019432: triglyceride biosynthetic process8.62E-04
50GO:1900865: chloroplast RNA modification1.01E-03
51GO:0006432: phenylalanyl-tRNA aminoacylation1.02E-03
52GO:0007154: cell communication1.02E-03
53GO:0018026: peptidyl-lysine monomethylation1.02E-03
54GO:0000256: allantoin catabolic process1.02E-03
55GO:0006423: cysteinyl-tRNA aminoacylation1.02E-03
56GO:0006435: threonyl-tRNA aminoacylation1.02E-03
57GO:0009220: pyrimidine ribonucleotide biosynthetic process1.02E-03
58GO:0001682: tRNA 5'-leader removal1.02E-03
59GO:1903426: regulation of reactive oxygen species biosynthetic process1.02E-03
60GO:0051262: protein tetramerization1.02E-03
61GO:0034470: ncRNA processing1.02E-03
62GO:0010198: synergid death1.02E-03
63GO:0009629: response to gravity1.02E-03
64GO:0006739: NADP metabolic process1.02E-03
65GO:0019388: galactose catabolic process1.02E-03
66GO:1900871: chloroplast mRNA modification1.02E-03
67GO:0009793: embryo development ending in seed dormancy1.14E-03
68GO:0006782: protoporphyrinogen IX biosynthetic process1.18E-03
69GO:0006415: translational termination1.36E-03
70GO:0009089: lysine biosynthetic process via diaminopimelate1.36E-03
71GO:0051604: protein maturation1.66E-03
72GO:0001578: microtubule bundle formation1.66E-03
73GO:0045493: xylan catabolic process1.66E-03
74GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.66E-03
75GO:0005977: glycogen metabolic process1.66E-03
76GO:0033591: response to L-ascorbic acid1.66E-03
77GO:0010136: ureide catabolic process1.66E-03
78GO:0010207: photosystem II assembly2.00E-03
79GO:0090351: seedling development2.25E-03
80GO:0009590: detection of gravity2.41E-03
81GO:0006164: purine nucleotide biosynthetic process2.41E-03
82GO:0043572: plastid fission2.41E-03
83GO:0010371: regulation of gibberellin biosynthetic process2.41E-03
84GO:0009102: biotin biosynthetic process2.41E-03
85GO:0008615: pyridoxine biosynthetic process2.41E-03
86GO:0006424: glutamyl-tRNA aminoacylation2.41E-03
87GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.41E-03
88GO:0006145: purine nucleobase catabolic process2.41E-03
89GO:0006508: proteolysis2.63E-03
90GO:0006418: tRNA aminoacylation for protein translation3.06E-03
91GO:0071483: cellular response to blue light3.24E-03
92GO:0006734: NADH metabolic process3.24E-03
93GO:0044205: 'de novo' UMP biosynthetic process3.24E-03
94GO:0007020: microtubule nucleation3.24E-03
95GO:0010021: amylopectin biosynthetic process3.24E-03
96GO:0010109: regulation of photosynthesis3.24E-03
97GO:0051781: positive regulation of cell division3.24E-03
98GO:0051322: anaphase3.24E-03
99GO:0009765: photosynthesis, light harvesting3.24E-03
100GO:0022622: root system development3.24E-03
101GO:0015979: photosynthesis3.67E-03
102GO:0006413: translational initiation3.69E-03
103GO:0010236: plastoquinone biosynthetic process4.15E-03
104GO:0016120: carotene biosynthetic process4.15E-03
105GO:0009107: lipoate biosynthetic process4.15E-03
106GO:0016123: xanthophyll biosynthetic process4.15E-03
107GO:0000304: response to singlet oxygen4.15E-03
108GO:0080110: sporopollenin biosynthetic process4.15E-03
109GO:0046785: microtubule polymerization4.15E-03
110GO:0046907: intracellular transport4.15E-03
111GO:0016117: carotenoid biosynthetic process4.75E-03
112GO:0009409: response to cold5.12E-03
113GO:0032973: amino acid export5.14E-03
114GO:0006655: phosphatidylglycerol biosynthetic process5.14E-03
115GO:0010190: cytochrome b6f complex assembly5.14E-03
116GO:0016554: cytidine to uridine editing5.14E-03
117GO:0034389: lipid particle organization6.21E-03
118GO:0030488: tRNA methylation6.21E-03
119GO:0009648: photoperiodism6.21E-03
120GO:0009955: adaxial/abaxial pattern specification6.21E-03
121GO:0042372: phylloquinone biosynthetic process6.21E-03
122GO:0019252: starch biosynthetic process6.40E-03
123GO:0006400: tRNA modification7.34E-03
124GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process7.34E-03
125GO:0032880: regulation of protein localization7.34E-03
126GO:0048528: post-embryonic root development7.34E-03
127GO:0009772: photosynthetic electron transport in photosystem II7.34E-03
128GO:0043090: amino acid import7.34E-03
129GO:0006614: SRP-dependent cotranslational protein targeting to membrane7.34E-03
130GO:0010196: nonphotochemical quenching7.34E-03
131GO:0006605: protein targeting8.55E-03
132GO:2000070: regulation of response to water deprivation8.55E-03
133GO:0009231: riboflavin biosynthetic process8.55E-03
134GO:0052543: callose deposition in cell wall8.55E-03
135GO:0005978: glycogen biosynthetic process8.55E-03
136GO:0009657: plastid organization9.82E-03
137GO:0017004: cytochrome complex assembly9.82E-03
138GO:0022900: electron transport chain9.82E-03
139GO:0009627: systemic acquired resistance1.11E-02
140GO:0006783: heme biosynthetic process1.12E-02
141GO:0009821: alkaloid biosynthetic process1.12E-02
142GO:0010206: photosystem II repair1.12E-02
143GO:0080144: amino acid homeostasis1.12E-02
144GO:0015031: protein transport1.19E-02
145GO:0031425: chloroplast RNA processing1.25E-02
146GO:0005982: starch metabolic process1.25E-02
147GO:0043067: regulation of programmed cell death1.25E-02
148GO:0006779: porphyrin-containing compound biosynthetic process1.25E-02
149GO:0006949: syncytium formation1.40E-02
150GO:0009790: embryo development1.43E-02
151GO:0007568: aging1.51E-02
152GO:0008285: negative regulation of cell proliferation1.55E-02
153GO:0009684: indoleacetic acid biosynthetic process1.55E-02
154GO:0019684: photosynthesis, light reaction1.55E-02
155GO:0009073: aromatic amino acid family biosynthetic process1.55E-02
156GO:0045087: innate immune response1.65E-02
157GO:0016024: CDP-diacylglycerol biosynthetic process1.71E-02
158GO:0045037: protein import into chloroplast stroma1.71E-02
159GO:0005975: carbohydrate metabolic process1.73E-02
160GO:0006006: glucose metabolic process1.87E-02
161GO:0009725: response to hormone1.87E-02
162GO:0006094: gluconeogenesis1.87E-02
163GO:2000012: regulation of auxin polar transport1.87E-02
164GO:0006631: fatty acid metabolic process1.97E-02
165GO:0010020: chloroplast fission2.04E-02
166GO:0009266: response to temperature stimulus2.04E-02
167GO:0071732: cellular response to nitric oxide2.21E-02
168GO:0006071: glycerol metabolic process2.39E-02
169GO:0000162: tryptophan biosynthetic process2.39E-02
170GO:0006412: translation2.52E-02
171GO:0009116: nucleoside metabolic process2.57E-02
172GO:0043622: cortical microtubule organization2.76E-02
173GO:0007017: microtubule-based process2.76E-02
174GO:0010073: meristem maintenance2.76E-02
175GO:0016575: histone deacetylation2.76E-02
176GO:0006364: rRNA processing2.88E-02
177GO:0048511: rhythmic process2.95E-02
178GO:0061077: chaperone-mediated protein folding2.95E-02
179GO:0031408: oxylipin biosynthetic process2.95E-02
180GO:0016114: terpenoid biosynthetic process2.95E-02
181GO:0042254: ribosome biogenesis3.13E-02
182GO:0035428: hexose transmembrane transport3.15E-02
183GO:0006730: one-carbon metabolic process3.15E-02
184GO:0031348: negative regulation of defense response3.15E-02
185GO:0019748: secondary metabolic process3.15E-02
186GO:0009814: defense response, incompatible interaction3.15E-02
187GO:0071369: cellular response to ethylene stimulus3.35E-02
188GO:0010227: floral organ abscission3.35E-02
189GO:0006012: galactose metabolic process3.35E-02
190GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.35E-02
191GO:0009306: protein secretion3.56E-02
192GO:0010584: pollen exine formation3.56E-02
193GO:0051028: mRNA transport3.77E-02
194GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.77E-02
195GO:0008284: positive regulation of cell proliferation3.77E-02
196GO:0008033: tRNA processing3.98E-02
197GO:0009735: response to cytokinin4.06E-02
198GO:0010197: polar nucleus fusion4.20E-02
199GO:0046323: glucose import4.20E-02
200GO:0009958: positive gravitropism4.20E-02
201GO:0042752: regulation of circadian rhythm4.42E-02
202GO:0009646: response to absence of light4.42E-02
203GO:0046686: response to cadmium ion4.44E-02
204GO:0000302: response to reactive oxygen species4.88E-02
RankGO TermAdjusted P value
1GO:0004561: alpha-N-acetylglucosaminidase activity0.00E+00
2GO:0051721: protein phosphatase 2A binding0.00E+00
3GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
4GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
5GO:0042903: tubulin deacetylase activity0.00E+00
6GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
7GO:0004823: leucine-tRNA ligase activity0.00E+00
8GO:0003858: 3-hydroxybutyrate dehydrogenase activity0.00E+00
9GO:0045435: lycopene epsilon cyclase activity0.00E+00
10GO:0004822: isoleucine-tRNA ligase activity0.00E+00
11GO:0004636: phosphoribosyl-ATP diphosphatase activity0.00E+00
12GO:0015267: channel activity0.00E+00
13GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
14GO:0033819: lipoyl(octanoyl) transferase activity0.00E+00
15GO:0005048: signal sequence binding0.00E+00
16GO:0004076: biotin synthase activity0.00E+00
17GO:0003937: IMP cyclohydrolase activity0.00E+00
18GO:0043136: glycerol-3-phosphatase activity0.00E+00
19GO:0000121: glycerol-1-phosphatase activity0.00E+00
20GO:0019144: ADP-sugar diphosphatase activity0.00E+00
21GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
22GO:0043864: indoleacetamide hydrolase activity0.00E+00
23GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
24GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
25GO:0005363: maltose transmembrane transporter activity0.00E+00
26GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
27GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
28GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
29GO:0050613: delta14-sterol reductase activity0.00E+00
30GO:0004635: phosphoribosyl-AMP cyclohydrolase activity0.00E+00
31GO:0004643: phosphoribosylaminoimidazolecarboxamide formyltransferase activity0.00E+00
32GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
33GO:0043014: alpha-tubulin binding0.00E+00
34GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
35GO:0016851: magnesium chelatase activity5.01E-07
36GO:0001053: plastid sigma factor activity1.44E-06
37GO:0016987: sigma factor activity1.44E-06
38GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase9.87E-06
39GO:0005528: FK506 binding1.65E-05
40GO:0070402: NADPH binding3.37E-05
41GO:0002161: aminoacyl-tRNA editing activity3.37E-05
42GO:0016149: translation release factor activity, codon specific7.23E-05
43GO:0000049: tRNA binding1.23E-04
44GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.28E-04
45GO:0008237: metallopeptidase activity1.58E-04
46GO:0004040: amidase activity1.94E-04
47GO:0004176: ATP-dependent peptidase activity3.67E-04
48GO:0005080: protein kinase C binding4.73E-04
49GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.73E-04
50GO:0052857: NADPHX epimerase activity4.73E-04
51GO:0004853: uroporphyrinogen decarboxylase activity4.73E-04
52GO:0052856: NADHX epimerase activity4.73E-04
53GO:0016784: 3-mercaptopyruvate sulfurtransferase activity4.73E-04
54GO:0005344: oxygen transporter activity4.73E-04
55GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity4.73E-04
56GO:0004347: glucose-6-phosphate isomerase activity4.73E-04
57GO:0005227: calcium activated cation channel activity4.73E-04
58GO:0004733: pyridoxamine-phosphate oxidase activity4.73E-04
59GO:0008184: glycogen phosphorylase activity4.73E-04
60GO:0004856: xylulokinase activity4.73E-04
61GO:0009496: plastoquinol--plastocyanin reductase activity4.73E-04
62GO:0004645: phosphorylase activity4.73E-04
63GO:0080042: ADP-glucose pyrophosphohydrolase activity4.73E-04
64GO:0050308: sugar-phosphatase activity4.73E-04
65GO:0019203: carbohydrate phosphatase activity4.73E-04
66GO:0004813: alanine-tRNA ligase activity4.73E-04
67GO:0003747: translation release factor activity8.62E-04
68GO:0004826: phenylalanine-tRNA ligase activity1.02E-03
69GO:0017118: lipoyltransferase activity1.02E-03
70GO:0080041: ADP-ribose pyrophosphohydrolase activity1.02E-03
71GO:0004326: tetrahydrofolylpolyglutamate synthase activity1.02E-03
72GO:0009977: proton motive force dependent protein transmembrane transporter activity1.02E-03
73GO:0016415: octanoyltransferase activity1.02E-03
74GO:0004817: cysteine-tRNA ligase activity1.02E-03
75GO:0004829: threonine-tRNA ligase activity1.02E-03
76GO:0003919: FMN adenylyltransferase activity1.02E-03
77GO:0004614: phosphoglucomutase activity1.02E-03
78GO:0019156: isoamylase activity1.02E-03
79GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity1.02E-03
80GO:0004148: dihydrolipoyl dehydrogenase activity1.66E-03
81GO:0030267: glyoxylate reductase (NADP) activity1.66E-03
82GO:0015462: ATPase-coupled protein transmembrane transporter activity1.66E-03
83GO:0004180: carboxypeptidase activity1.66E-03
84GO:0005504: fatty acid binding1.66E-03
85GO:0003913: DNA photolyase activity1.66E-03
86GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.66E-03
87GO:0008236: serine-type peptidase activity1.91E-03
88GO:0004222: metalloendopeptidase activity2.31E-03
89GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.41E-03
90GO:0043023: ribosomal large subunit binding2.41E-03
91GO:0001872: (1->3)-beta-D-glucan binding2.41E-03
92GO:0019201: nucleotide kinase activity2.41E-03
93GO:0048487: beta-tubulin binding2.41E-03
94GO:0004792: thiosulfate sulfurtransferase activity2.41E-03
95GO:0046556: alpha-L-arabinofuranosidase activity3.24E-03
96GO:0004659: prenyltransferase activity3.24E-03
97GO:0016279: protein-lysine N-methyltransferase activity3.24E-03
98GO:0004045: aminoacyl-tRNA hydrolase activity3.24E-03
99GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds3.24E-03
100GO:0045430: chalcone isomerase activity3.24E-03
101GO:0009044: xylan 1,4-beta-xylosidase activity3.24E-03
102GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity3.24E-03
103GO:0030570: pectate lyase activity4.03E-03
104GO:0016773: phosphotransferase activity, alcohol group as acceptor4.15E-03
105GO:0008374: O-acyltransferase activity4.15E-03
106GO:0045300: acyl-[acyl-carrier-protein] desaturase activity4.15E-03
107GO:0004812: aminoacyl-tRNA ligase activity4.75E-03
108GO:0004366: glycerol-3-phosphate O-acyltransferase activity5.14E-03
109GO:2001070: starch binding5.14E-03
110GO:0004526: ribonuclease P activity5.14E-03
111GO:0004556: alpha-amylase activity5.14E-03
112GO:0003743: translation initiation factor activity5.21E-03
113GO:0003899: DNA-directed 5'-3' RNA polymerase activity5.60E-03
114GO:0004144: diacylglycerol O-acyltransferase activity6.21E-03
115GO:0004723: calcium-dependent protein serine/threonine phosphatase activity6.21E-03
116GO:0005261: cation channel activity6.21E-03
117GO:0004017: adenylate kinase activity6.21E-03
118GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity6.21E-03
119GO:0009881: photoreceptor activity7.34E-03
120GO:0004033: aldo-keto reductase (NADP) activity8.55E-03
121GO:0005337: nucleoside transmembrane transporter activity8.55E-03
122GO:0008312: 7S RNA binding8.55E-03
123GO:0004034: aldose 1-epimerase activity8.55E-03
124GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)9.82E-03
125GO:0008138: protein tyrosine/serine/threonine phosphatase activity1.12E-02
126GO:0016844: strictosidine synthase activity1.25E-02
127GO:0005525: GTP binding1.32E-02
128GO:0047372: acylglycerol lipase activity1.55E-02
129GO:0003746: translation elongation factor activity1.65E-02
130GO:0003723: RNA binding1.79E-02
131GO:0031072: heat shock protein binding1.87E-02
132GO:0003924: GTPase activity2.00E-02
133GO:0008266: poly(U) RNA binding2.04E-02
134GO:0008083: growth factor activity2.04E-02
135GO:0051537: 2 iron, 2 sulfur cluster binding2.31E-02
136GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.39E-02
137GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.39E-02
138GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.39E-02
139GO:0051536: iron-sulfur cluster binding2.57E-02
140GO:0004407: histone deacetylase activity2.57E-02
141GO:0000287: magnesium ion binding2.99E-02
142GO:0003735: structural constituent of ribosome3.02E-02
143GO:0016788: hydrolase activity, acting on ester bonds3.13E-02
144GO:0022891: substrate-specific transmembrane transporter activity3.35E-02
145GO:0016787: hydrolase activity3.50E-02
146GO:0003756: protein disulfide isomerase activity3.56E-02
147GO:0016887: ATPase activity3.80E-02
148GO:0008080: N-acetyltransferase activity4.20E-02
149GO:0010181: FMN binding4.42E-02
150GO:0016853: isomerase activity4.42E-02
151GO:0005355: glucose transmembrane transporter activity4.42E-02
152GO:0050662: coenzyme binding4.42E-02
153GO:0004872: receptor activity4.65E-02
154GO:0048038: quinone binding4.88E-02
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Gene type



Gene DE type