Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G45850

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090627: plant epidermal cell differentiation0.00E+00
2GO:0009606: tropism0.00E+00
3GO:1901698: response to nitrogen compound0.00E+00
4GO:0090322: regulation of superoxide metabolic process0.00E+00
5GO:0000372: Group I intron splicing0.00E+00
6GO:1903224: regulation of endodermal cell differentiation0.00E+00
7GO:0043972: histone H3-K23 acetylation0.00E+00
8GO:0080127: fruit septum development0.00E+00
9GO:0035884: arabinan biosynthetic process0.00E+00
10GO:0097164: ammonium ion metabolic process0.00E+00
11GO:0045184: establishment of protein localization0.00E+00
12GO:0033206: meiotic cytokinesis0.00E+00
13GO:0031222: arabinan catabolic process0.00E+00
14GO:0042794: rRNA transcription from plastid promoter0.00E+00
15GO:0044154: histone H3-K14 acetylation0.00E+00
16GO:0046719: regulation by virus of viral protein levels in host cell0.00E+00
17GO:0045014: negative regulation of transcription by glucose0.00E+00
18GO:0042793: transcription from plastid promoter9.60E-08
19GO:0010569: regulation of double-strand break repair via homologous recombination1.41E-05
20GO:0009734: auxin-activated signaling pathway2.78E-05
21GO:0009416: response to light stimulus6.63E-05
22GO:0010305: leaf vascular tissue pattern formation1.12E-04
23GO:2000038: regulation of stomatal complex development1.71E-04
24GO:0010588: cotyledon vascular tissue pattern formation2.21E-04
25GO:0080188: RNA-directed DNA methylation3.07E-04
26GO:0009913: epidermal cell differentiation3.65E-04
27GO:0010067: procambium histogenesis4.87E-04
28GO:2000033: regulation of seed dormancy process4.87E-04
29GO:1905039: carboxylic acid transmembrane transport5.68E-04
30GO:1905200: gibberellic acid transmembrane transport5.68E-04
31GO:0080112: seed growth5.68E-04
32GO:0043971: histone H3-K18 acetylation5.68E-04
33GO:0090558: plant epidermis development5.68E-04
34GO:0010480: microsporocyte differentiation5.68E-04
35GO:1903866: palisade mesophyll development5.68E-04
36GO:0035987: endodermal cell differentiation5.68E-04
37GO:0006436: tryptophanyl-tRNA aminoacylation5.68E-04
38GO:0015904: tetracycline transport5.68E-04
39GO:0010342: endosperm cellularization5.68E-04
40GO:0034757: negative regulation of iron ion transport5.68E-04
41GO:0048016: inositol phosphate-mediated signaling5.68E-04
42GO:0042659: regulation of cell fate specification5.68E-04
43GO:0006955: immune response6.23E-04
44GO:0046620: regulation of organ growth7.75E-04
45GO:0009938: negative regulation of gibberellic acid mediated signaling pathway7.75E-04
46GO:0009658: chloroplast organization8.44E-04
47GO:0009733: response to auxin8.75E-04
48GO:0048507: meristem development1.13E-03
49GO:0000373: Group II intron splicing1.13E-03
50GO:0070981: L-asparagine biosynthetic process1.22E-03
51GO:0010271: regulation of chlorophyll catabolic process1.22E-03
52GO:0018026: peptidyl-lysine monomethylation1.22E-03
53GO:0009662: etioplast organization1.22E-03
54GO:1900033: negative regulation of trichome patterning1.22E-03
55GO:0080009: mRNA methylation1.22E-03
56GO:0006529: asparagine biosynthetic process1.22E-03
57GO:2000123: positive regulation of stomatal complex development1.22E-03
58GO:0009451: RNA modification1.57E-03
59GO:0010252: auxin homeostasis1.66E-03
60GO:0009739: response to gibberellin1.84E-03
61GO:0090391: granum assembly2.01E-03
62GO:0010589: leaf proximal/distal pattern formation2.01E-03
63GO:0001578: microtubule bundle formation2.01E-03
64GO:0071705: nitrogen compound transport2.01E-03
65GO:0090708: specification of plant organ axis polarity2.01E-03
66GO:0080117: secondary growth2.01E-03
67GO:0010027: thylakoid membrane organization2.08E-03
68GO:0010029: regulation of seed germination2.23E-03
69GO:0009740: gibberellic acid mediated signaling pathway2.50E-03
70GO:0007276: gamete generation2.92E-03
71GO:0046739: transport of virus in multicellular host2.92E-03
72GO:1901332: negative regulation of lateral root development2.92E-03
73GO:1902290: positive regulation of defense response to oomycetes2.92E-03
74GO:0010371: regulation of gibberellin biosynthetic process2.92E-03
75GO:1902476: chloride transmembrane transport2.92E-03
76GO:0010239: chloroplast mRNA processing2.92E-03
77GO:0009800: cinnamic acid biosynthetic process2.92E-03
78GO:0000160: phosphorelay signal transduction system3.11E-03
79GO:0009863: salicylic acid mediated signaling pathway3.68E-03
80GO:0010187: negative regulation of seed germination3.68E-03
81GO:2000377: regulation of reactive oxygen species metabolic process3.68E-03
82GO:0000914: phragmoplast assembly3.93E-03
83GO:0046656: folic acid biosynthetic process3.93E-03
84GO:0006221: pyrimidine nucleotide biosynthetic process3.93E-03
85GO:0006346: methylation-dependent chromatin silencing3.93E-03
86GO:0006808: regulation of nitrogen utilization3.93E-03
87GO:0006479: protein methylation3.93E-03
88GO:0048629: trichome patterning3.93E-03
89GO:1900864: mitochondrial RNA modification3.93E-03
90GO:0051322: anaphase3.93E-03
91GO:0071249: cellular response to nitrate3.93E-03
92GO:0030104: water homeostasis3.93E-03
93GO:0035279: mRNA cleavage involved in gene silencing by miRNA3.93E-03
94GO:0016998: cell wall macromolecule catabolic process4.47E-03
95GO:0030001: metal ion transport4.68E-03
96GO:0009616: virus induced gene silencing5.05E-03
97GO:0048497: maintenance of floral organ identity5.05E-03
98GO:0016123: xanthophyll biosynthetic process5.05E-03
99GO:0032957: inositol trisphosphate metabolic process5.05E-03
100GO:0032876: negative regulation of DNA endoreduplication5.05E-03
101GO:0080110: sporopollenin biosynthetic process5.05E-03
102GO:0030308: negative regulation of cell growth5.05E-03
103GO:0010375: stomatal complex patterning5.05E-03
104GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway5.08E-03
105GO:0009831: plant-type cell wall modification involved in multidimensional cell growth5.34E-03
106GO:0009926: auxin polar transport5.48E-03
107GO:0040008: regulation of growth5.90E-03
108GO:0006351: transcription, DNA-templated5.97E-03
109GO:1902456: regulation of stomatal opening6.26E-03
110GO:0048831: regulation of shoot system development6.26E-03
111GO:0016554: cytidine to uridine editing6.26E-03
112GO:0042176: regulation of protein catabolic process6.26E-03
113GO:0003006: developmental process involved in reproduction6.26E-03
114GO:0010315: auxin efflux6.26E-03
115GO:0006559: L-phenylalanine catabolic process6.26E-03
116GO:0009643: photosynthetic acclimation6.26E-03
117GO:0018258: protein O-linked glycosylation via hydroxyproline6.26E-03
118GO:0046855: inositol phosphate dephosphorylation6.26E-03
119GO:0010405: arabinogalactan protein metabolic process6.26E-03
120GO:0010087: phloem or xylem histogenesis6.82E-03
121GO:0042538: hyperosmotic salinity response7.34E-03
122GO:0000911: cytokinesis by cell plate formation7.56E-03
123GO:0048509: regulation of meristem development7.56E-03
124GO:0046654: tetrahydrofolate biosynthetic process7.56E-03
125GO:2000037: regulation of stomatal complex patterning7.56E-03
126GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity7.56E-03
127GO:0010310: regulation of hydrogen peroxide metabolic process7.56E-03
128GO:2000067: regulation of root morphogenesis7.56E-03
129GO:0071470: cellular response to osmotic stress7.56E-03
130GO:0007018: microtubule-based movement7.92E-03
131GO:0009736: cytokinin-activated signaling pathway8.04E-03
132GO:0048825: cotyledon development8.50E-03
133GO:0048437: floral organ development8.96E-03
134GO:0009396: folic acid-containing compound biosynthetic process8.96E-03
135GO:0035196: production of miRNAs involved in gene silencing by miRNA8.96E-03
136GO:0010103: stomatal complex morphogenesis8.96E-03
137GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway8.96E-03
138GO:0010374: stomatal complex development8.96E-03
139GO:0006821: chloride transport8.96E-03
140GO:0009642: response to light intensity1.04E-02
141GO:0042255: ribosome assembly1.04E-02
142GO:0006353: DNA-templated transcription, termination1.04E-02
143GO:0048766: root hair initiation1.04E-02
144GO:0010090: trichome morphogenesis1.04E-02
145GO:0010492: maintenance of shoot apical meristem identity1.04E-02
146GO:0055075: potassium ion homeostasis1.04E-02
147GO:0000105: histidine biosynthetic process1.04E-02
148GO:0052543: callose deposition in cell wall1.04E-02
149GO:0009828: plant-type cell wall loosening1.11E-02
150GO:0010052: guard cell differentiation1.20E-02
151GO:0007186: G-protein coupled receptor signaling pathway1.20E-02
152GO:0001510: RNA methylation1.20E-02
153GO:0010233: phloem transport1.20E-02
154GO:0010497: plasmodesmata-mediated intercellular transport1.20E-02
155GO:0032544: plastid translation1.20E-02
156GO:0048574: long-day photoperiodism, flowering1.20E-02
157GO:0007389: pattern specification process1.20E-02
158GO:0044030: regulation of DNA methylation1.20E-02
159GO:0010093: specification of floral organ identity1.20E-02
160GO:0000910: cytokinesis1.25E-02
161GO:0048589: developmental growth1.36E-02
162GO:1900865: chloroplast RNA modification1.54E-02
163GO:1900426: positive regulation of defense response to bacterium1.54E-02
164GO:0042761: very long-chain fatty acid biosynthetic process1.54E-02
165GO:2000280: regulation of root development1.54E-02
166GO:0006349: regulation of gene expression by genetic imprinting1.54E-02
167GO:0006535: cysteine biosynthetic process from serine1.71E-02
168GO:0030422: production of siRNA involved in RNA interference1.71E-02
169GO:0048829: root cap development1.71E-02
170GO:0006949: syncytium formation1.71E-02
171GO:0031627: telomeric loop formation1.71E-02
172GO:0010048: vernalization response1.71E-02
173GO:0048481: plant ovule development1.73E-02
174GO:0048767: root hair elongation1.82E-02
175GO:0009750: response to fructose1.90E-02
176GO:0015770: sucrose transport1.90E-02
177GO:0048229: gametophyte development1.90E-02
178GO:0046856: phosphatidylinositol dephosphorylation1.90E-02
179GO:0010015: root morphogenesis1.90E-02
180GO:0010218: response to far red light1.91E-02
181GO:0006811: ion transport1.91E-02
182GO:0009790: embryo development2.05E-02
183GO:0015706: nitrate transport2.09E-02
184GO:0010152: pollen maturation2.09E-02
185GO:0010105: negative regulation of ethylene-activated signaling pathway2.09E-02
186GO:0010582: floral meristem determinacy2.09E-02
187GO:0008361: regulation of cell size2.09E-02
188GO:0009867: jasmonic acid mediated signaling pathway2.20E-02
189GO:0010102: lateral root morphogenesis2.29E-02
190GO:0009691: cytokinin biosynthetic process2.29E-02
191GO:0010075: regulation of meristem growth2.29E-02
192GO:0009767: photosynthetic electron transport chain2.29E-02
193GO:0006541: glutamine metabolic process2.50E-02
194GO:0010020: chloroplast fission2.50E-02
195GO:0010223: secondary shoot formation2.50E-02
196GO:0006270: DNA replication initiation2.50E-02
197GO:0009887: animal organ morphogenesis2.50E-02
198GO:0010540: basipetal auxin transport2.50E-02
199GO:0009934: regulation of meristem structural organization2.50E-02
200GO:0048467: gynoecium development2.50E-02
201GO:0010167: response to nitrate2.71E-02
202GO:0009901: anther dehiscence2.71E-02
203GO:0090351: seedling development2.71E-02
204GO:0010114: response to red light2.84E-02
205GO:0006355: regulation of transcription, DNA-templated2.84E-02
206GO:0006071: glycerol metabolic process2.93E-02
207GO:0006833: water transport2.93E-02
208GO:0080147: root hair cell development3.15E-02
209GO:0008380: RNA splicing3.15E-02
210GO:0019344: cysteine biosynthetic process3.15E-02
211GO:0009793: embryo development ending in seed dormancy3.33E-02
212GO:0006418: tRNA aminoacylation for protein translation3.38E-02
213GO:0006874: cellular calcium ion homeostasis3.38E-02
214GO:0010073: meristem maintenance3.38E-02
215GO:0006825: copper ion transport3.38E-02
216GO:0051302: regulation of cell division3.38E-02
217GO:0009664: plant-type cell wall organization3.56E-02
218GO:0006306: DNA methylation3.62E-02
219GO:0003333: amino acid transmembrane transport3.62E-02
220GO:0010431: seed maturation3.62E-02
221GO:0031348: negative regulation of defense response3.86E-02
222GO:0030154: cell differentiation3.89E-02
223GO:0010082: regulation of root meristem growth4.11E-02
224GO:0071215: cellular response to abscisic acid stimulus4.11E-02
225GO:0009686: gibberellin biosynthetic process4.11E-02
226GO:0001944: vasculature development4.11E-02
227GO:0009909: regulation of flower development4.23E-02
228GO:0048443: stamen development4.36E-02
229GO:0042127: regulation of cell proliferation4.36E-02
230GO:0006284: base-excision repair4.36E-02
231GO:0010089: xylem development4.36E-02
232GO:0010584: pollen exine formation4.36E-02
233GO:0070417: cellular response to cold4.61E-02
234GO:0048316: seed development4.66E-02
235GO:0000226: microtubule cytoskeleton organization4.88E-02
236GO:0080022: primary root development4.88E-02
237GO:0008033: tRNA processing4.88E-02
238GO:0010501: RNA secondary structure unwinding4.88E-02
239GO:0010051: xylem and phloem pattern formation4.88E-02
240GO:0010118: stomatal movement4.88E-02
241GO:0048653: anther development4.88E-02
242GO:0042631: cellular response to water deprivation4.88E-02
RankGO TermAdjusted P value
1GO:0042834: peptidoglycan binding0.00E+00
2GO:0071633: dihydroceramidase activity0.00E+00
3GO:0003723: RNA binding3.83E-05
4GO:0016805: dipeptidase activity4.71E-05
5GO:0016274: protein-arginine N-methyltransferase activity5.68E-04
6GO:0046030: inositol trisphosphate phosphatase activity5.68E-04
7GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity5.68E-04
8GO:0004156: dihydropteroate synthase activity5.68E-04
9GO:0003848: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity5.68E-04
10GO:0004071: aspartate-ammonia ligase activity5.68E-04
11GO:0004830: tryptophan-tRNA ligase activity5.68E-04
12GO:0052381: tRNA dimethylallyltransferase activity5.68E-04
13GO:0004016: adenylate cyclase activity5.68E-04
14GO:0004400: histidinol-phosphate transaminase activity5.68E-04
15GO:1905201: gibberellin transmembrane transporter activity5.68E-04
16GO:0003727: single-stranded RNA binding7.40E-04
17GO:0000989: transcription factor activity, transcription factor binding1.13E-03
18GO:0008805: carbon-monoxide oxygenase activity1.22E-03
19GO:0008493: tetracycline transporter activity1.22E-03
20GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.22E-03
21GO:0009884: cytokinin receptor activity1.22E-03
22GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity1.22E-03
23GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.22E-03
24GO:0009672: auxin:proton symporter activity1.33E-03
25GO:0017150: tRNA dihydrouridine synthase activity2.01E-03
26GO:0045548: phenylalanine ammonia-lyase activity2.01E-03
27GO:0070181: small ribosomal subunit rRNA binding2.01E-03
28GO:0005034: osmosensor activity2.01E-03
29GO:0016707: gibberellin 3-beta-dioxygenase activity2.01E-03
30GO:0004180: carboxypeptidase activity2.01E-03
31GO:0010329: auxin efflux transmembrane transporter activity2.34E-03
32GO:0003725: double-stranded RNA binding2.34E-03
33GO:0009041: uridylate kinase activity2.92E-03
34GO:0001872: (1->3)-beta-D-glucan binding2.92E-03
35GO:0005354: galactose transmembrane transporter activity2.92E-03
36GO:0004519: endonuclease activity3.32E-03
37GO:0010385: double-stranded methylated DNA binding3.93E-03
38GO:0005253: anion channel activity3.93E-03
39GO:0004930: G-protein coupled receptor activity3.93E-03
40GO:0046556: alpha-L-arabinofuranosidase activity3.93E-03
41GO:0016279: protein-lysine N-methyltransferase activity3.93E-03
42GO:0010011: auxin binding3.93E-03
43GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed3.93E-03
44GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding4.72E-03
45GO:0008725: DNA-3-methyladenine glycosylase activity5.05E-03
46GO:0003700: transcription factor activity, sequence-specific DNA binding5.23E-03
47GO:0030570: pectate lyase activity5.34E-03
48GO:0005515: protein binding5.97E-03
49GO:0043621: protein self-association6.06E-03
50GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity6.26E-03
51GO:0005247: voltage-gated chloride channel activity6.26E-03
52GO:0003688: DNA replication origin binding6.26E-03
53GO:1990714: hydroxyproline O-galactosyltransferase activity6.26E-03
54GO:0008017: microtubule binding6.78E-03
55GO:0004871: signal transducer activity7.12E-03
56GO:0001085: RNA polymerase II transcription factor binding7.36E-03
57GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity7.56E-03
58GO:0016832: aldehyde-lyase activity7.56E-03
59GO:0019900: kinase binding7.56E-03
60GO:0004124: cysteine synthase activity7.56E-03
61GO:0019901: protein kinase binding8.50E-03
62GO:0003777: microtubule motor activity9.16E-03
63GO:0000156: phosphorelay response regulator activity1.04E-02
64GO:0004650: polygalacturonase activity1.12E-02
65GO:0008173: RNA methyltransferase activity1.20E-02
66GO:0008889: glycerophosphodiester phosphodiesterase activity1.36E-02
67GO:0005215: transporter activity1.62E-02
68GO:0004673: protein histidine kinase activity1.71E-02
69GO:0008171: O-methyltransferase activity1.71E-02
70GO:0016829: lyase activity1.86E-02
71GO:0008515: sucrose transmembrane transporter activity1.90E-02
72GO:0005089: Rho guanyl-nucleotide exchange factor activity1.90E-02
73GO:0003691: double-stranded telomeric DNA binding1.90E-02
74GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding2.01E-02
75GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity2.09E-02
76GO:0015144: carbohydrate transmembrane transporter activity2.11E-02
77GO:0003697: single-stranded DNA binding2.20E-02
78GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors2.20E-02
79GO:0004674: protein serine/threonine kinase activity2.24E-02
80GO:0004022: alcohol dehydrogenase (NAD) activity2.29E-02
81GO:0031072: heat shock protein binding2.29E-02
82GO:0000155: phosphorelay sensor kinase activity2.29E-02
83GO:0009982: pseudouridine synthase activity2.29E-02
84GO:0004712: protein serine/threonine/tyrosine kinase activity2.40E-02
85GO:0005351: sugar:proton symporter activity2.45E-02
86GO:0043565: sequence-specific DNA binding2.47E-02
87GO:0004970: ionotropic glutamate receptor activity2.71E-02
88GO:0051119: sugar transmembrane transporter activity2.71E-02
89GO:0005217: intracellular ligand-gated ion channel activity2.71E-02
90GO:0046872: metal ion binding2.79E-02
91GO:0003677: DNA binding2.85E-02
92GO:0008134: transcription factor binding3.15E-02
93GO:0005345: purine nucleobase transmembrane transporter activity3.38E-02
94GO:0015079: potassium ion transmembrane transporter activity3.38E-02
95GO:0043424: protein histidine kinase binding3.38E-02
96GO:0033612: receptor serine/threonine kinase binding3.62E-02
97GO:0003690: double-stranded DNA binding3.96E-02
98GO:0022891: substrate-specific transmembrane transporter activity4.11E-02
99GO:0008168: methyltransferase activity4.14E-02
100GO:0016788: hydrolase activity, acting on ester bonds4.44E-02
101GO:0018024: histone-lysine N-methyltransferase activity4.61E-02
102GO:0004812: aminoacyl-tRNA ligase activity4.61E-02
103GO:0003682: chromatin binding4.65E-02
104GO:0004402: histone acetyltransferase activity4.88E-02
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Gene type



Gene DE type