Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G45460

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090615: mitochondrial mRNA processing0.00E+00
2GO:0000492: box C/D snoRNP assembly0.00E+00
3GO:0031222: arabinan catabolic process0.00E+00
4GO:0042794: rRNA transcription from plastid promoter0.00E+00
5GO:0044154: histone H3-K14 acetylation0.00E+00
6GO:0045014: negative regulation of transcription by glucose0.00E+00
7GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
8GO:0090627: plant epidermal cell differentiation0.00E+00
9GO:0009606: tropism0.00E+00
10GO:1901698: response to nitrogen compound0.00E+00
11GO:0000491: small nucleolar ribonucleoprotein complex assembly0.00E+00
12GO:0090322: regulation of superoxide metabolic process0.00E+00
13GO:0000372: Group I intron splicing0.00E+00
14GO:1903224: regulation of endodermal cell differentiation0.00E+00
15GO:0043972: histone H3-K23 acetylation0.00E+00
16GO:0080127: fruit septum development0.00E+00
17GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
18GO:0097164: ammonium ion metabolic process0.00E+00
19GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
20GO:0045184: establishment of protein localization0.00E+00
21GO:0009734: auxin-activated signaling pathway1.41E-06
22GO:0042793: transcription from plastid promoter6.48E-06
23GO:0009451: RNA modification3.17E-05
24GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.46E-05
25GO:0007389: pattern specification process3.64E-05
26GO:0009658: chloroplast organization1.03E-04
27GO:0009416: response to light stimulus1.29E-04
28GO:2000038: regulation of stomatal complex development1.31E-04
29GO:0009913: epidermal cell differentiation2.85E-04
30GO:0006436: tryptophanyl-tRNA aminoacylation4.84E-04
31GO:0034757: negative regulation of iron ion transport4.84E-04
32GO:0034970: histone H3-R2 methylation4.84E-04
33GO:0042659: regulation of cell fate specification4.84E-04
34GO:0034972: histone H3-R26 methylation4.84E-04
35GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic4.84E-04
36GO:0043971: histone H3-K18 acetylation4.84E-04
37GO:0090558: plant epidermis development4.84E-04
38GO:0010063: positive regulation of trichoblast fate specification4.84E-04
39GO:0010480: microsporocyte differentiation4.84E-04
40GO:1903866: palisade mesophyll development4.84E-04
41GO:0034971: histone H3-R17 methylation4.84E-04
42GO:0035987: endodermal cell differentiation4.84E-04
43GO:0006955: immune response4.90E-04
44GO:0048437: floral organ development4.90E-04
45GO:0000902: cell morphogenesis8.92E-04
46GO:0000373: Group II intron splicing8.92E-04
47GO:0040008: regulation of growth9.04E-04
48GO:0006529: asparagine biosynthetic process1.04E-03
49GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine1.04E-03
50GO:2000123: positive regulation of stomatal complex development1.04E-03
51GO:0010254: nectary development1.04E-03
52GO:0070981: L-asparagine biosynthetic process1.04E-03
53GO:1902326: positive regulation of chlorophyll biosynthetic process1.04E-03
54GO:0010271: regulation of chlorophyll catabolic process1.04E-03
55GO:0018026: peptidyl-lysine monomethylation1.04E-03
56GO:0010434: bract formation1.04E-03
57GO:0009662: etioplast organization1.04E-03
58GO:1900033: negative regulation of trichome patterning1.04E-03
59GO:0048439: flower morphogenesis1.04E-03
60GO:1904143: positive regulation of carotenoid biosynthetic process1.04E-03
61GO:0080009: mRNA methylation1.04E-03
62GO:0010252: auxin homeostasis1.21E-03
63GO:0048829: root cap development1.22E-03
64GO:0045037: protein import into chloroplast stroma1.61E-03
65GO:0010582: floral meristem determinacy1.61E-03
66GO:0009954: proximal/distal pattern formation1.70E-03
67GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic1.70E-03
68GO:0045910: negative regulation of DNA recombination1.70E-03
69GO:0090708: specification of plant organ axis polarity1.70E-03
70GO:0080117: secondary growth1.70E-03
71GO:0044210: 'de novo' CTP biosynthetic process1.70E-03
72GO:0090391: granum assembly1.70E-03
73GO:0042780: tRNA 3'-end processing1.70E-03
74GO:0001578: microtubule bundle formation1.70E-03
75GO:0071705: nitrogen compound transport1.70E-03
76GO:0010588: cotyledon vascular tissue pattern formation1.84E-03
77GO:0048481: plant ovule development2.14E-03
78GO:0010371: regulation of gibberellin biosynthetic process2.47E-03
79GO:1902476: chloride transmembrane transport2.47E-03
80GO:0010071: root meristem specification2.47E-03
81GO:0051513: regulation of monopolar cell growth2.47E-03
82GO:0010239: chloroplast mRNA processing2.47E-03
83GO:0019048: modulation by virus of host morphology or physiology2.47E-03
84GO:0046739: transport of virus in multicellular host2.47E-03
85GO:0051289: protein homotetramerization2.47E-03
86GO:1902290: positive regulation of defense response to oomycetes2.47E-03
87GO:0031048: chromatin silencing by small RNA2.47E-03
88GO:0006418: tRNA aminoacylation for protein translation3.17E-03
89GO:0006479: protein methylation3.32E-03
90GO:0048629: trichome patterning3.32E-03
91GO:0051322: anaphase3.32E-03
92GO:0071249: cellular response to nitrate3.32E-03
93GO:0030104: water homeostasis3.32E-03
94GO:0006221: pyrimidine nucleotide biosynthetic process3.32E-03
95GO:0051567: histone H3-K9 methylation3.32E-03
96GO:0009790: embryo development3.36E-03
97GO:0003333: amino acid transmembrane transport3.49E-03
98GO:0016998: cell wall macromolecule catabolic process3.49E-03
99GO:0009926: auxin polar transport4.00E-03
100GO:0016123: xanthophyll biosynthetic process4.26E-03
101GO:0032876: negative regulation of DNA endoreduplication4.26E-03
102GO:0080110: sporopollenin biosynthetic process4.26E-03
103GO:0030308: negative regulation of cell growth4.26E-03
104GO:0010375: stomatal complex patterning4.26E-03
105GO:0048497: maintenance of floral organ identity4.26E-03
106GO:0042127: regulation of cell proliferation4.54E-03
107GO:0006468: protein phosphorylation4.58E-03
108GO:0010405: arabinogalactan protein metabolic process5.27E-03
109GO:0009959: negative gravitropism5.27E-03
110GO:0006655: phosphatidylglycerol biosynthetic process5.27E-03
111GO:0016554: cytidine to uridine editing5.27E-03
112GO:0048831: regulation of shoot system development5.27E-03
113GO:0003006: developmental process involved in reproduction5.27E-03
114GO:0010315: auxin efflux5.27E-03
115GO:0016458: gene silencing5.27E-03
116GO:0009643: photosynthetic acclimation5.27E-03
117GO:0018258: protein O-linked glycosylation via hydroxyproline5.27E-03
118GO:0010087: phloem or xylem histogenesis5.32E-03
119GO:0010305: leaf vascular tissue pattern formation5.74E-03
120GO:0009646: response to absence of light6.17E-03
121GO:0007018: microtubule-based movement6.17E-03
122GO:2000037: regulation of stomatal complex patterning6.36E-03
123GO:0010310: regulation of hydrogen peroxide metabolic process6.36E-03
124GO:2000067: regulation of root morphogenesis6.36E-03
125GO:0010067: procambium histogenesis6.36E-03
126GO:0009942: longitudinal axis specification6.36E-03
127GO:0048509: regulation of meristem development6.36E-03
128GO:0030488: tRNA methylation6.36E-03
129GO:1901259: chloroplast rRNA processing6.36E-03
130GO:0048825: cotyledon development6.62E-03
131GO:0016567: protein ubiquitination6.79E-03
132GO:0080156: mitochondrial mRNA modification7.10E-03
133GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway7.52E-03
134GO:0006821: chloride transport7.52E-03
135GO:0010103: stomatal complex morphogenesis7.52E-03
136GO:0032502: developmental process7.59E-03
137GO:0010583: response to cyclopentenone7.59E-03
138GO:0009639: response to red or far red light8.62E-03
139GO:0001522: pseudouridine synthesis8.76E-03
140GO:0030162: regulation of proteolysis8.76E-03
141GO:0042255: ribosome assembly8.76E-03
142GO:0006353: DNA-templated transcription, termination8.76E-03
143GO:0048766: root hair initiation8.76E-03
144GO:0055075: potassium ion homeostasis8.76E-03
145GO:0009733: response to auxin9.85E-03
146GO:0009827: plant-type cell wall modification1.01E-02
147GO:0010497: plasmodesmata-mediated intercellular transport1.01E-02
148GO:0009657: plastid organization1.01E-02
149GO:0032544: plastid translation1.01E-02
150GO:0044030: regulation of DNA methylation1.01E-02
151GO:0010027: thylakoid membrane organization1.03E-02
152GO:0048507: meristem development1.14E-02
153GO:0048589: developmental growth1.14E-02
154GO:1900426: positive regulation of defense response to bacterium1.29E-02
155GO:0009638: phototropism1.29E-02
156GO:2000280: regulation of root development1.29E-02
157GO:0006349: regulation of gene expression by genetic imprinting1.29E-02
158GO:1900865: chloroplast RNA modification1.29E-02
159GO:0031425: chloroplast RNA processing1.29E-02
160GO:0000160: phosphorelay signal transduction system1.42E-02
161GO:0006298: mismatch repair1.44E-02
162GO:0031627: telomeric loop formation1.44E-02
163GO:0010048: vernalization response1.44E-02
164GO:0006535: cysteine biosynthetic process from serine1.44E-02
165GO:0030422: production of siRNA involved in RNA interference1.44E-02
166GO:0045036: protein targeting to chloroplast1.44E-02
167GO:1903507: negative regulation of nucleic acid-templated transcription1.59E-02
168GO:0048229: gametophyte development1.59E-02
169GO:0006865: amino acid transport1.64E-02
170GO:0008361: regulation of cell size1.75E-02
171GO:0015706: nitrate transport1.75E-02
172GO:0010152: pollen maturation1.75E-02
173GO:0016024: CDP-diacylglycerol biosynthetic process1.75E-02
174GO:0010075: regulation of meristem growth1.92E-02
175GO:0009767: photosynthetic electron transport chain1.92E-02
176GO:0010102: lateral root morphogenesis1.92E-02
177GO:0009785: blue light signaling pathway1.92E-02
178GO:0009793: embryo development ending in seed dormancy1.92E-02
179GO:0009691: cytokinin biosynthetic process1.92E-02
180GO:0009934: regulation of meristem structural organization2.09E-02
181GO:0048467: gynoecium development2.09E-02
182GO:0010207: photosystem II assembly2.09E-02
183GO:0006541: glutamine metabolic process2.09E-02
184GO:0010020: chloroplast fission2.09E-02
185GO:0010223: secondary shoot formation2.09E-02
186GO:0080188: RNA-directed DNA methylation2.27E-02
187GO:0010167: response to nitrate2.27E-02
188GO:0006071: glycerol metabolic process2.45E-02
189GO:0006833: water transport2.45E-02
190GO:0019344: cysteine biosynthetic process2.64E-02
191GO:0009944: polarity specification of adaxial/abaxial axis2.64E-02
192GO:0080147: root hair cell development2.64E-02
193GO:0031347: regulation of defense response2.68E-02
194GO:0009664: plant-type cell wall organization2.78E-02
195GO:0010073: meristem maintenance2.83E-02
196GO:0051302: regulation of cell division2.83E-02
197GO:0009736: cytokinin-activated signaling pathway2.98E-02
198GO:0010431: seed maturation3.03E-02
199GO:0006306: DNA methylation3.03E-02
200GO:2000022: regulation of jasmonic acid mediated signaling pathway3.23E-02
201GO:0009909: regulation of flower development3.31E-02
202GO:0010227: floral organ abscission3.44E-02
203GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.44E-02
204GO:0010082: regulation of root meristem growth3.44E-02
205GO:0071215: cellular response to abscisic acid stimulus3.44E-02
206GO:0009686: gibberellin biosynthetic process3.44E-02
207GO:0001944: vasculature development3.44E-02
208GO:0048367: shoot system development3.64E-02
209GO:0048316: seed development3.64E-02
210GO:0010089: xylem development3.65E-02
211GO:0010584: pollen exine formation3.65E-02
212GO:0048443: stamen development3.65E-02
213GO:0006284: base-excision repair3.65E-02
214GO:0070417: cellular response to cold3.86E-02
215GO:0048653: anther development4.08E-02
216GO:0042631: cellular response to water deprivation4.08E-02
217GO:0000226: microtubule cytoskeleton organization4.08E-02
218GO:0080022: primary root development4.08E-02
219GO:0008033: tRNA processing4.08E-02
220GO:0006342: chromatin silencing4.31E-02
221GO:0009741: response to brassinosteroid4.31E-02
222GO:0009958: positive gravitropism4.31E-02
223GO:0009960: endosperm development4.31E-02
224GO:0005975: carbohydrate metabolic process4.52E-02
225GO:0006814: sodium ion transport4.54E-02
226GO:0048544: recognition of pollen4.54E-02
227GO:0009851: auxin biosynthetic process4.77E-02
228GO:0008654: phospholipid biosynthetic process4.77E-02
229GO:0071554: cell wall organization or biogenesis5.00E-02
RankGO TermAdjusted P value
1GO:0070009: serine-type aminopeptidase activity0.00E+00
2GO:0042834: peptidoglycan binding0.00E+00
3GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
4GO:0004519: endonuclease activity3.97E-07
5GO:0009672: auxin:proton symporter activity6.52E-05
6GO:0001872: (1->3)-beta-D-glucan binding7.55E-05
7GO:0010329: auxin efflux transmembrane transporter activity1.56E-04
8GO:0003723: RNA binding4.62E-04
9GO:0004016: adenylate cyclase activity4.84E-04
10GO:0016274: protein-arginine N-methyltransferase activity4.84E-04
11GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity4.84E-04
12GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity4.84E-04
13GO:0004071: aspartate-ammonia ligase activity4.84E-04
14GO:0004830: tryptophan-tRNA ligase activity4.84E-04
15GO:0052381: tRNA dimethylallyltransferase activity4.84E-04
16GO:0004674: protein serine/threonine kinase activity9.86E-04
17GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.04E-03
18GO:0008805: carbon-monoxide oxygenase activity1.04E-03
19GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.04E-03
20GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity1.04E-03
21GO:0009884: cytokinin receptor activity1.04E-03
22GO:0035241: protein-arginine omega-N monomethyltransferase activity1.04E-03
23GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity1.04E-03
24GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity1.04E-03
25GO:0016707: gibberellin 3-beta-dioxygenase activity1.70E-03
26GO:0008469: histone-arginine N-methyltransferase activity1.70E-03
27GO:0017150: tRNA dihydrouridine synthase activity1.70E-03
28GO:0032549: ribonucleoside binding1.70E-03
29GO:0042781: 3'-tRNA processing endoribonuclease activity1.70E-03
30GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity1.70E-03
31GO:0016805: dipeptidase activity1.70E-03
32GO:0005034: osmosensor activity1.70E-03
33GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.07E-03
34GO:0008508: bile acid:sodium symporter activity2.47E-03
35GO:0003883: CTP synthase activity2.47E-03
36GO:0009041: uridylate kinase activity2.47E-03
37GO:0035197: siRNA binding2.47E-03
38GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds3.04E-03
39GO:0010011: auxin binding3.32E-03
40GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed3.32E-03
41GO:0010328: auxin influx transmembrane transporter activity3.32E-03
42GO:0010385: double-stranded methylated DNA binding3.32E-03
43GO:0005253: anion channel activity3.32E-03
44GO:0004930: G-protein coupled receptor activity3.32E-03
45GO:0046556: alpha-L-arabinofuranosidase activity3.32E-03
46GO:0016279: protein-lysine N-methyltransferase activity3.32E-03
47GO:0005215: transporter activity3.45E-03
48GO:0008725: DNA-3-methyladenine glycosylase activity4.26E-03
49GO:0004888: transmembrane signaling receptor activity4.26E-03
50GO:0070696: transmembrane receptor protein serine/threonine kinase binding4.26E-03
51GO:0003727: single-stranded RNA binding4.54E-03
52GO:0004871: signal transducer activity4.61E-03
53GO:0004812: aminoacyl-tRNA ligase activity4.92E-03
54GO:0005247: voltage-gated chloride channel activity5.27E-03
55GO:0030983: mismatched DNA binding5.27E-03
56GO:0004605: phosphatidate cytidylyltransferase activity5.27E-03
57GO:1990714: hydroxyproline O-galactosyltransferase activity5.27E-03
58GO:0004124: cysteine synthase activity6.36E-03
59GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity6.36E-03
60GO:0016832: aldehyde-lyase activity6.36E-03
61GO:0019900: kinase binding6.36E-03
62GO:0003777: microtubule motor activity6.67E-03
63GO:0030515: snoRNA binding7.52E-03
64GO:0008168: methyltransferase activity7.97E-03
65GO:0004650: polygalacturonase activity8.19E-03
66GO:0008889: glycerophosphodiester phosphodiesterase activity1.14E-02
67GO:0030247: polysaccharide binding1.22E-02
68GO:0019843: rRNA binding1.23E-02
69GO:0004673: protein histidine kinase activity1.44E-02
70GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding1.45E-02
71GO:0008559: xenobiotic-transporting ATPase activity1.59E-02
72GO:0003691: double-stranded telomeric DNA binding1.59E-02
73GO:0001054: RNA polymerase I activity1.59E-02
74GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors1.71E-02
75GO:0004521: endoribonuclease activity1.75E-02
76GO:0031072: heat shock protein binding1.92E-02
77GO:0000155: phosphorelay sensor kinase activity1.92E-02
78GO:0009982: pseudouridine synthase activity1.92E-02
79GO:0003725: double-stranded RNA binding1.92E-02
80GO:0004022: alcohol dehydrogenase (NAD) activity1.92E-02
81GO:0008017: microtubule binding1.96E-02
82GO:0015293: symporter activity2.49E-02
83GO:0008134: transcription factor binding2.64E-02
84GO:0003714: transcription corepressor activity2.64E-02
85GO:0043424: protein histidine kinase binding2.83E-02
86GO:0005345: purine nucleobase transmembrane transporter activity2.83E-02
87GO:0015079: potassium ion transmembrane transporter activity2.83E-02
88GO:0005524: ATP binding3.01E-02
89GO:0008408: 3'-5' exonuclease activity3.03E-02
90GO:0033612: receptor serine/threonine kinase binding3.03E-02
91GO:0005515: protein binding3.12E-02
92GO:0016788: hydrolase activity, acting on ester bonds3.27E-02
93GO:0015171: amino acid transmembrane transporter activity3.31E-02
94GO:0003677: DNA binding3.63E-02
95GO:0018024: histone-lysine N-methyltransferase activity3.86E-02
96GO:0004402: histone acetyltransferase activity4.08E-02
97GO:0003779: actin binding4.12E-02
98GO:0005199: structural constituent of cell wall4.31E-02
99GO:0001085: RNA polymerase II transcription factor binding4.31E-02
100GO:0004527: exonuclease activity4.31E-02
101GO:0050662: coenzyme binding4.54E-02
102GO:0052689: carboxylic ester hydrolase activity4.71E-02
103GO:0019901: protein kinase binding4.77E-02
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Gene type



Gene DE type