Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G44230

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010335: response to non-ionic osmotic stress0.00E+00
2GO:1901918: negative regulation of exoribonuclease activity0.00E+00
3GO:0016553: base conversion or substitution editing0.00E+00
4GO:0090279: regulation of calcium ion import0.00E+00
5GO:0033494: ferulate metabolic process0.00E+00
6GO:0090470: shoot organ boundary specification0.00E+00
7GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
8GO:1903508: positive regulation of nucleic acid-templated transcription0.00E+00
9GO:0071474: cellular hyperosmotic response0.00E+00
10GO:0046471: phosphatidylglycerol metabolic process0.00E+00
11GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process0.00E+00
12GO:0034337: RNA folding0.00E+00
13GO:0006982: response to lipid hydroperoxide0.00E+00
14GO:0015995: chlorophyll biosynthetic process1.59E-10
15GO:0010207: photosystem II assembly7.10E-09
16GO:0055114: oxidation-reduction process1.76E-07
17GO:0006094: gluconeogenesis1.01E-05
18GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly9.53E-05
19GO:0015994: chlorophyll metabolic process1.64E-04
20GO:0006021: inositol biosynthetic process1.64E-04
21GO:0010143: cutin biosynthetic process2.48E-04
22GO:0010027: thylakoid membrane organization2.90E-04
23GO:0046855: inositol phosphate dephosphorylation3.52E-04
24GO:0042549: photosystem II stabilization3.52E-04
25GO:0015979: photosynthesis4.15E-04
26GO:0010362: negative regulation of anion channel activity by blue light5.54E-04
27GO:0015969: guanosine tetraphosphate metabolic process5.54E-04
28GO:0046467: membrane lipid biosynthetic process5.54E-04
29GO:1902478: negative regulation of defense response to bacterium, incompatible interaction5.54E-04
30GO:0031426: polycistronic mRNA processing5.54E-04
31GO:0043489: RNA stabilization5.54E-04
32GO:1904966: positive regulation of vitamin E biosynthetic process5.54E-04
33GO:0000481: maturation of 5S rRNA5.54E-04
34GO:0043953: protein transport by the Tat complex5.54E-04
35GO:0015801: aromatic amino acid transport5.54E-04
36GO:1904964: positive regulation of phytol biosynthetic process5.54E-04
37GO:0010426: DNA methylation on cytosine within a CHH sequence5.54E-04
38GO:0065002: intracellular protein transmembrane transport5.54E-04
39GO:0043686: co-translational protein modification5.54E-04
40GO:0043087: regulation of GTPase activity5.54E-04
41GO:0071461: cellular response to redox state5.54E-04
42GO:0071277: cellular response to calcium ion5.54E-04
43GO:0046167: glycerol-3-phosphate biosynthetic process5.54E-04
44GO:0043007: maintenance of rDNA5.54E-04
45GO:1902458: positive regulation of stomatal opening5.54E-04
46GO:0048564: photosystem I assembly7.46E-04
47GO:0009704: de-etiolation7.46E-04
48GO:0016559: peroxisome fission7.46E-04
49GO:0009658: chloroplast organization7.81E-04
50GO:0006631: fatty acid metabolic process8.44E-04
51GO:0006520: cellular amino acid metabolic process9.47E-04
52GO:0006098: pentose-phosphate shunt1.09E-03
53GO:0035304: regulation of protein dephosphorylation1.19E-03
54GO:0080005: photosystem stoichiometry adjustment1.19E-03
55GO:0042819: vitamin B6 biosynthetic process1.19E-03
56GO:0010541: acropetal auxin transport1.19E-03
57GO:1902326: positive regulation of chlorophyll biosynthetic process1.19E-03
58GO:0006650: glycerophospholipid metabolic process1.19E-03
59GO:0010155: regulation of proton transport1.19E-03
60GO:0006729: tetrahydrobiopterin biosynthetic process1.19E-03
61GO:1903426: regulation of reactive oxygen species biosynthetic process1.19E-03
62GO:0015790: UDP-xylose transport1.19E-03
63GO:0030388: fructose 1,6-bisphosphate metabolic process1.19E-03
64GO:0051262: protein tetramerization1.19E-03
65GO:0009773: photosynthetic electron transport in photosystem I1.73E-03
66GO:0006096: glycolytic process1.94E-03
67GO:0034051: negative regulation of plant-type hypersensitive response1.96E-03
68GO:0006000: fructose metabolic process1.96E-03
69GO:0046168: glycerol-3-phosphate catabolic process1.96E-03
70GO:0044375: regulation of peroxisome size1.96E-03
71GO:0010160: formation of animal organ boundary1.96E-03
72GO:0046621: negative regulation of organ growth1.96E-03
73GO:0006790: sulfur compound metabolic process1.98E-03
74GO:0016024: CDP-diacylglycerol biosynthetic process1.98E-03
75GO:0009152: purine ribonucleotide biosynthetic process2.84E-03
76GO:0046653: tetrahydrofolate metabolic process2.84E-03
77GO:0010239: chloroplast mRNA processing2.84E-03
78GO:0033014: tetrapyrrole biosynthetic process2.84E-03
79GO:0008615: pyridoxine biosynthetic process2.84E-03
80GO:0043481: anthocyanin accumulation in tissues in response to UV light2.84E-03
81GO:0006072: glycerol-3-phosphate metabolic process2.84E-03
82GO:2001141: regulation of RNA biosynthetic process2.84E-03
83GO:0042823: pyridoxal phosphate biosynthetic process2.84E-03
84GO:0010371: regulation of gibberellin biosynthetic process2.84E-03
85GO:0006020: inositol metabolic process2.84E-03
86GO:0046854: phosphatidylinositol phosphorylation2.85E-03
87GO:0006636: unsaturated fatty acid biosynthetic process3.18E-03
88GO:0007568: aging3.35E-03
89GO:0009637: response to blue light3.77E-03
90GO:0019464: glycine decarboxylation via glycine cleavage system3.83E-03
91GO:2000306: positive regulation of photomorphogenesis3.83E-03
92GO:0006546: glycine catabolic process3.83E-03
93GO:0010600: regulation of auxin biosynthetic process3.83E-03
94GO:0016226: iron-sulfur cluster assembly4.70E-03
95GO:0000304: response to singlet oxygen4.91E-03
96GO:0080110: sporopollenin biosynthetic process4.91E-03
97GO:0006465: signal peptide processing4.91E-03
98GO:0006564: L-serine biosynthetic process4.91E-03
99GO:0009904: chloroplast accumulation movement4.91E-03
100GO:0045038: protein import into chloroplast thylakoid membrane4.91E-03
101GO:0031365: N-terminal protein amino acid modification4.91E-03
102GO:0009107: lipoate biosynthetic process4.91E-03
103GO:0044550: secondary metabolite biosynthetic process5.18E-03
104GO:0042546: cell wall biogenesis5.49E-03
105GO:0019722: calcium-mediated signaling5.59E-03
106GO:0006655: phosphatidylglycerol biosynthetic process6.09E-03
107GO:0060918: auxin transport6.09E-03
108GO:0045962: positive regulation of development, heterochronic6.09E-03
109GO:0009920: cell plate formation involved in plant-type cell wall biogenesis6.09E-03
110GO:0009228: thiamine biosynthetic process6.09E-03
111GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway6.09E-03
112GO:0009741: response to brassinosteroid7.07E-03
113GO:0045926: negative regulation of growth7.36E-03
114GO:0010244: response to low fluence blue light stimulus by blue low-fluence system7.36E-03
115GO:0009903: chloroplast avoidance movement7.36E-03
116GO:0010189: vitamin E biosynthetic process7.36E-03
117GO:1901259: chloroplast rRNA processing7.36E-03
118GO:0000054: ribosomal subunit export from nucleus7.36E-03
119GO:0009791: post-embryonic development8.17E-03
120GO:0019252: starch biosynthetic process8.17E-03
121GO:1900057: positive regulation of leaf senescence8.71E-03
122GO:0048437: floral organ development8.71E-03
123GO:0006400: tRNA modification8.71E-03
124GO:0050829: defense response to Gram-negative bacterium8.71E-03
125GO:0010161: red light signaling pathway8.71E-03
126GO:0009395: phospholipid catabolic process8.71E-03
127GO:0032502: developmental process9.36E-03
128GO:0043086: negative regulation of catalytic activity9.47E-03
129GO:0007155: cell adhesion1.01E-02
130GO:0010928: regulation of auxin mediated signaling pathway1.01E-02
131GO:0009690: cytokinin metabolic process1.01E-02
132GO:0032508: DNA duplex unwinding1.01E-02
133GO:2000070: regulation of response to water deprivation1.01E-02
134GO:0042255: ribosome assembly1.01E-02
135GO:0006353: DNA-templated transcription, termination1.01E-02
136GO:0006810: transport1.10E-02
137GO:0007267: cell-cell signaling1.13E-02
138GO:0006002: fructose 6-phosphate metabolic process1.17E-02
139GO:0071482: cellular response to light stimulus1.17E-02
140GO:0015996: chlorophyll catabolic process1.17E-02
141GO:0007186: G-protein coupled receptor signaling pathway1.17E-02
142GO:0006526: arginine biosynthetic process1.17E-02
143GO:0009657: plastid organization1.17E-02
144GO:0009932: cell tip growth1.17E-02
145GO:0009742: brassinosteroid mediated signaling pathway1.29E-02
146GO:0009821: alkaloid biosynthetic process1.33E-02
147GO:0051865: protein autoubiquitination1.33E-02
148GO:0090305: nucleic acid phosphodiester bond hydrolysis1.33E-02
149GO:0010206: photosystem II repair1.33E-02
150GO:0090333: regulation of stomatal closure1.33E-02
151GO:0006783: heme biosynthetic process1.33E-02
152GO:0048507: meristem development1.33E-02
153GO:0010205: photoinhibition1.49E-02
154GO:0009638: phototropism1.49E-02
155GO:0006779: porphyrin-containing compound biosynthetic process1.49E-02
156GO:0010411: xyloglucan metabolic process1.50E-02
157GO:0018298: protein-chromophore linkage1.66E-02
158GO:0006535: cysteine biosynthetic process from serine1.67E-02
159GO:0043069: negative regulation of programmed cell death1.67E-02
160GO:0009641: shade avoidance1.67E-02
161GO:0006811: ion transport1.84E-02
162GO:0019684: photosynthesis, light reaction1.85E-02
163GO:0006352: DNA-templated transcription, initiation1.85E-02
164GO:0008285: negative regulation of cell proliferation1.85E-02
165GO:0006415: translational termination1.85E-02
166GO:0008361: regulation of cell size2.04E-02
167GO:0009735: response to cytokinin2.04E-02
168GO:0045037: protein import into chloroplast stroma2.04E-02
169GO:0006633: fatty acid biosynthetic process2.14E-02
170GO:0006413: translational initiation2.20E-02
171GO:0034599: cellular response to oxidative stress2.21E-02
172GO:0005986: sucrose biosynthetic process2.23E-02
173GO:0009785: blue light signaling pathway2.23E-02
174GO:0018107: peptidyl-threonine phosphorylation2.23E-02
175GO:0009718: anthocyanin-containing compound biosynthetic process2.23E-02
176GO:0009725: response to hormone2.23E-02
177GO:0009767: photosynthetic electron transport chain2.23E-02
178GO:0034605: cellular response to heat2.43E-02
179GO:0010020: chloroplast fission2.43E-02
180GO:0010223: secondary shoot formation2.43E-02
181GO:0019253: reductive pentose-phosphate cycle2.43E-02
182GO:0010540: basipetal auxin transport2.43E-02
183GO:0009266: response to temperature stimulus2.43E-02
184GO:0007031: peroxisome organization2.64E-02
185GO:0042343: indole glucosinolate metabolic process2.64E-02
186GO:0019853: L-ascorbic acid biosynthetic process2.64E-02
187GO:0032259: methylation2.69E-02
188GO:0009640: photomorphogenesis2.73E-02
189GO:0010025: wax biosynthetic process2.85E-02
190GO:0006833: water transport2.85E-02
191GO:0019762: glucosinolate catabolic process2.85E-02
192GO:0005975: carbohydrate metabolic process2.87E-02
193GO:0019344: cysteine biosynthetic process3.07E-02
194GO:0010073: meristem maintenance3.29E-02
195GO:0061077: chaperone-mediated protein folding3.52E-02
196GO:0031408: oxylipin biosynthetic process3.52E-02
197GO:0006306: DNA methylation3.52E-02
198GO:0016114: terpenoid biosynthetic process3.52E-02
199GO:0003333: amino acid transmembrane transport3.52E-02
200GO:0048511: rhythmic process3.52E-02
201GO:0098542: defense response to other organism3.52E-02
202GO:0010431: seed maturation3.52E-02
203GO:0010017: red or far-red light signaling pathway3.75E-02
204GO:0030433: ubiquitin-dependent ERAD pathway3.75E-02
205GO:0080092: regulation of pollen tube growth3.75E-02
206GO:0019748: secondary metabolic process3.75E-02
207GO:0006857: oligopeptide transport3.93E-02
208GO:0010227: floral organ abscission3.99E-02
209GO:0042254: ribosome biogenesis4.23E-02
210GO:0006817: phosphate ion transport4.24E-02
211GO:0010584: pollen exine formation4.24E-02
212GO:0048443: stamen development4.24E-02
213GO:0009306: protein secretion4.24E-02
214GO:0009561: megagametogenesis4.24E-02
215GO:0034220: ion transmembrane transport4.74E-02
216GO:0042335: cuticle development4.74E-02
217GO:0009958: positive gravitropism5.00E-02
218GO:0045489: pectin biosynthetic process5.00E-02
219GO:0010182: sugar mediated signaling pathway5.00E-02
RankGO TermAdjusted P value
1GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
2GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
3GO:0045550: geranylgeranyl reductase activity0.00E+00
4GO:0009673: low-affinity phosphate transmembrane transporter activity0.00E+00
5GO:0050613: delta14-sterol reductase activity0.00E+00
6GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
7GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
8GO:0033840: NDP-glucose-starch glucosyltransferase activity0.00E+00
9GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
10GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
11GO:0036033: mediator complex binding0.00E+00
12GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
13GO:0016491: oxidoreductase activity4.54E-08
14GO:0004332: fructose-bisphosphate aldolase activity9.21E-06
15GO:0052832: inositol monophosphate 3-phosphatase activity1.34E-05
16GO:0018708: thiol S-methyltransferase activity1.34E-05
17GO:0008934: inositol monophosphate 1-phosphatase activity1.34E-05
18GO:0052833: inositol monophosphate 4-phosphatase activity1.34E-05
19GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor9.53E-05
20GO:0016851: magnesium chelatase activity9.53E-05
21GO:0019843: rRNA binding1.54E-04
22GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.64E-04
23GO:0008266: poly(U) RNA binding2.48E-04
24GO:0000293: ferric-chelate reductase activity3.52E-04
25GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.52E-04
26GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.68E-04
27GO:0005227: calcium activated cation channel activity5.54E-04
28GO:0009496: plastoquinol--plastocyanin reductase activity5.54E-04
29GO:0080132: fatty acid alpha-hydroxylase activity5.54E-04
30GO:0010242: oxygen evolving activity5.54E-04
31GO:0004325: ferrochelatase activity5.54E-04
32GO:0004328: formamidase activity5.54E-04
33GO:0042586: peptide deformylase activity5.54E-04
34GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity5.54E-04
35GO:0031957: very long-chain fatty acid-CoA ligase activity5.54E-04
36GO:0010347: L-galactose-1-phosphate phosphatase activity5.54E-04
37GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity5.54E-04
38GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity5.54E-04
39GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity1.19E-03
40GO:0015173: aromatic amino acid transmembrane transporter activity1.19E-03
41GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity1.19E-03
42GO:0004081: bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity1.19E-03
43GO:0034432: bis(5'-adenosyl)-pentaphosphatase activity1.19E-03
44GO:0019172: glyoxalase III activity1.19E-03
45GO:0043024: ribosomal small subunit binding1.19E-03
46GO:0008728: GTP diphosphokinase activity1.19E-03
47GO:0005464: UDP-xylose transmembrane transporter activity1.19E-03
48GO:0036381: pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity1.19E-03
49GO:0050017: L-3-cyanoalanine synthase activity1.19E-03
50GO:0048531: beta-1,3-galactosyltransferase activity1.19E-03
51GO:0047746: chlorophyllase activity1.19E-03
52GO:0042389: omega-3 fatty acid desaturase activity1.19E-03
53GO:0009977: proton motive force dependent protein transmembrane transporter activity1.19E-03
54GO:0004617: phosphoglycerate dehydrogenase activity1.19E-03
55GO:0048038: quinone binding1.23E-03
56GO:0010277: chlorophyllide a oxygenase [overall] activity1.96E-03
57GO:0005504: fatty acid binding1.96E-03
58GO:0004373: glycogen (starch) synthase activity1.96E-03
59GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.96E-03
60GO:0050734: hydroxycinnamoyltransferase activity1.96E-03
61GO:0016992: lipoate synthase activity1.96E-03
62GO:0032947: protein complex scaffold1.96E-03
63GO:0030267: glyoxylate reductase (NADP) activity1.96E-03
64GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.96E-03
65GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity1.96E-03
66GO:0008864: formyltetrahydrofolate deformylase activity1.96E-03
67GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.96E-03
68GO:0042802: identical protein binding2.16E-03
69GO:0004565: beta-galactosidase activity2.25E-03
70GO:0031072: heat shock protein binding2.25E-03
71GO:0004375: glycine dehydrogenase (decarboxylating) activity2.84E-03
72GO:0048027: mRNA 5'-UTR binding2.84E-03
73GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides2.84E-03
74GO:0009882: blue light photoreceptor activity2.84E-03
75GO:0016788: hydrolase activity, acting on ester bonds3.16E-03
76GO:0005528: FK506 binding3.53E-03
77GO:0051536: iron-sulfur cluster binding3.53E-03
78GO:0045430: chalcone isomerase activity3.83E-03
79GO:0009011: starch synthase activity3.83E-03
80GO:0016987: sigma factor activity3.83E-03
81GO:0043495: protein anchor3.83E-03
82GO:0001053: plastid sigma factor activity3.83E-03
83GO:0003993: acid phosphatase activity3.99E-03
84GO:0005506: iron ion binding4.30E-03
85GO:0005275: amine transmembrane transporter activity4.91E-03
86GO:0052689: carboxylic ester hydrolase activity5.32E-03
87GO:0046910: pectinesterase inhibitor activity5.36E-03
88GO:0003727: single-stranded RNA binding5.59E-03
89GO:0004462: lactoylglutathione lyase activity6.09E-03
90GO:0004130: cytochrome-c peroxidase activity6.09E-03
91GO:0035673: oligopeptide transmembrane transporter activity6.09E-03
92GO:0042578: phosphoric ester hydrolase activity6.09E-03
93GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity6.09E-03
94GO:0003755: peptidyl-prolyl cis-trans isomerase activity6.35E-03
95GO:0051287: NAD binding6.66E-03
96GO:0008080: N-acetyltransferase activity7.07E-03
97GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity7.36E-03
98GO:0102391: decanoate--CoA ligase activity7.36E-03
99GO:0005261: cation channel activity7.36E-03
100GO:0003886: DNA (cytosine-5-)-methyltransferase activity7.36E-03
101GO:0004124: cysteine synthase activity7.36E-03
102GO:0051920: peroxiredoxin activity7.36E-03
103GO:0019899: enzyme binding8.71E-03
104GO:0004467: long-chain fatty acid-CoA ligase activity8.71E-03
105GO:0016762: xyloglucan:xyloglucosyl transferase activity8.75E-03
106GO:0016209: antioxidant activity1.01E-02
107GO:0003729: mRNA binding1.13E-02
108GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water1.17E-02
109GO:0008135: translation factor activity, RNA binding1.17E-02
110GO:0071949: FAD binding1.33E-02
111GO:0004743: pyruvate kinase activity1.49E-02
112GO:0030955: potassium ion binding1.49E-02
113GO:0016844: strictosidine synthase activity1.49E-02
114GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity1.49E-02
115GO:0016798: hydrolase activity, acting on glycosyl bonds1.50E-02
116GO:0005515: protein binding1.74E-02
117GO:0005089: Rho guanyl-nucleotide exchange factor activity1.85E-02
118GO:0015198: oligopeptide transporter activity2.04E-02
119GO:0005525: GTP binding2.10E-02
120GO:0003746: translation elongation factor activity2.11E-02
121GO:0008081: phosphoric diester hydrolase activity2.23E-02
122GO:0010329: auxin efflux transmembrane transporter activity2.23E-02
123GO:0005315: inorganic phosphate transmembrane transporter activity2.23E-02
124GO:0000155: phosphorelay sensor kinase activity2.23E-02
125GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen2.36E-02
126GO:0031624: ubiquitin conjugating enzyme binding2.43E-02
127GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.43E-02
128GO:0004185: serine-type carboxypeptidase activity2.73E-02
129GO:0035091: phosphatidylinositol binding2.95E-02
130GO:0051537: 2 iron, 2 sulfur cluster binding2.95E-02
131GO:0004857: enzyme inhibitor activity3.07E-02
132GO:0042626: ATPase activity, coupled to transmembrane movement of substances3.24E-02
133GO:0003690: double-stranded DNA binding3.80E-02
134GO:0008168: methyltransferase activity3.95E-02
135GO:0022891: substrate-specific transmembrane transporter activity3.99E-02
136GO:0004601: peroxidase activity4.14E-02
137GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups4.48E-02
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Gene type



Gene DE type