Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G43910

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0033231: carbohydrate export0.00E+00
2GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
3GO:0005996: monosaccharide metabolic process0.00E+00
4GO:0015717: triose phosphate transport0.00E+00
5GO:0046471: phosphatidylglycerol metabolic process0.00E+00
6GO:1905157: positive regulation of photosynthesis0.00E+00
7GO:1901918: negative regulation of exoribonuclease activity0.00E+00
8GO:0055114: oxidation-reduction process1.78E-07
9GO:0006094: gluconeogenesis1.14E-06
10GO:0030388: fructose 1,6-bisphosphate metabolic process3.65E-06
11GO:0006000: fructose metabolic process1.31E-05
12GO:0015979: photosynthesis2.80E-05
13GO:0010600: regulation of auxin biosynthetic process5.29E-05
14GO:0019253: reductive pentose-phosphate cycle5.78E-05
15GO:0015995: chlorophyll biosynthetic process6.64E-05
16GO:0006636: unsaturated fatty acid biosynthetic process8.19E-05
17GO:0009658: chloroplast organization8.47E-05
18GO:0009643: photosynthetic acclimation1.22E-04
19GO:0010244: response to low fluence blue light stimulus by blue low-fluence system1.67E-04
20GO:0009772: photosynthetic electron transport in photosystem II2.19E-04
21GO:0009704: de-etiolation2.76E-04
22GO:0010928: regulation of auxin mediated signaling pathway2.76E-04
23GO:0030974: thiamine pyrophosphate transport2.82E-04
24GO:0046467: membrane lipid biosynthetic process2.82E-04
25GO:0043953: protein transport by the Tat complex2.82E-04
26GO:1904966: positive regulation of vitamin E biosynthetic process2.82E-04
27GO:0071277: cellular response to calcium ion2.82E-04
28GO:0000481: maturation of 5S rRNA2.82E-04
29GO:1904964: positive regulation of phytol biosynthetic process2.82E-04
30GO:0042371: vitamin K biosynthetic process2.82E-04
31GO:0065002: intracellular protein transmembrane transport2.82E-04
32GO:0046167: glycerol-3-phosphate biosynthetic process2.82E-04
33GO:0043007: maintenance of rDNA2.82E-04
34GO:0034337: RNA folding2.82E-04
35GO:0019510: S-adenosylhomocysteine catabolic process2.82E-04
36GO:1902334: fructose export from vacuole to cytoplasm2.82E-04
37GO:0051180: vitamin transport2.82E-04
38GO:0015969: guanosine tetraphosphate metabolic process2.82E-04
39GO:0015755: fructose transport2.82E-04
40GO:0019252: starch biosynthetic process3.16E-04
41GO:0006002: fructose 6-phosphate metabolic process3.40E-04
42GO:0006754: ATP biosynthetic process4.10E-04
43GO:0033353: S-adenosylmethionine cycle6.19E-04
44GO:1902326: positive regulation of chlorophyll biosynthetic process6.19E-04
45GO:0015893: drug transport6.19E-04
46GO:0006650: glycerophospholipid metabolic process6.19E-04
47GO:0008616: queuosine biosynthetic process6.19E-04
48GO:0015790: UDP-xylose transport6.19E-04
49GO:0009773: photosynthetic electron transport in photosystem I6.54E-04
50GO:0005986: sucrose biosynthetic process8.46E-04
51GO:0044550: secondary metabolite biosynthetic process8.68E-04
52GO:0010207: photosystem II assembly9.50E-04
53GO:0046168: glycerol-3-phosphate catabolic process1.00E-03
54GO:0035436: triose phosphate transmembrane transport1.00E-03
55GO:0044375: regulation of peroxisome size1.00E-03
56GO:0006081: cellular aldehyde metabolic process1.00E-03
57GO:0006072: glycerol-3-phosphate metabolic process1.44E-03
58GO:0010731: protein glutathionylation1.44E-03
59GO:0006020: inositol metabolic process1.44E-03
60GO:0071484: cellular response to light intensity1.44E-03
61GO:0009152: purine ribonucleotide biosynthetic process1.44E-03
62GO:0046653: tetrahydrofolate metabolic process1.44E-03
63GO:0006546: glycine catabolic process1.92E-03
64GO:0006021: inositol biosynthetic process1.92E-03
65GO:0015713: phosphoglycerate transport1.92E-03
66GO:0010021: amylopectin biosynthetic process1.92E-03
67GO:0015689: molybdate ion transport1.92E-03
68GO:0009765: photosynthesis, light harvesting1.92E-03
69GO:0045727: positive regulation of translation1.92E-03
70GO:0009585: red, far-red light phototransduction2.10E-03
71GO:0006564: L-serine biosynthetic process2.46E-03
72GO:0009107: lipoate biosynthetic process2.46E-03
73GO:0016123: xanthophyll biosynthetic process2.46E-03
74GO:0006465: signal peptide processing2.46E-03
75GO:0006096: glycolytic process2.60E-03
76GO:1902456: regulation of stomatal opening3.03E-03
77GO:0046855: inositol phosphate dephosphorylation3.03E-03
78GO:0017148: negative regulation of translation3.65E-03
79GO:0010019: chloroplast-nucleus signaling pathway3.65E-03
80GO:1900057: positive regulation of leaf senescence4.30E-03
81GO:0010161: red light signaling pathway4.30E-03
82GO:1900056: negative regulation of leaf senescence4.30E-03
83GO:0042255: ribosome assembly4.99E-03
84GO:0006353: DNA-templated transcription, termination4.99E-03
85GO:0032508: DNA duplex unwinding4.99E-03
86GO:0000105: histidine biosynthetic process4.99E-03
87GO:0009231: riboflavin biosynthetic process4.99E-03
88GO:0016559: peroxisome fission4.99E-03
89GO:0008610: lipid biosynthetic process4.99E-03
90GO:0009657: plastid organization5.72E-03
91GO:0006526: arginine biosynthetic process5.72E-03
92GO:0032544: plastid translation5.72E-03
93GO:2000031: regulation of salicylic acid mediated signaling pathway5.72E-03
94GO:0009932: cell tip growth5.72E-03
95GO:0032259: methylation5.80E-03
96GO:0006098: pentose-phosphate shunt6.48E-03
97GO:0010206: photosystem II repair6.48E-03
98GO:0090333: regulation of stomatal closure6.48E-03
99GO:0009821: alkaloid biosynthetic process6.48E-03
100GO:0007623: circadian rhythm6.60E-03
101GO:0010380: regulation of chlorophyll biosynthetic process7.28E-03
102GO:0010205: photoinhibition7.28E-03
103GO:0010267: production of ta-siRNAs involved in RNA interference7.28E-03
104GO:0034599: cellular response to oxidative stress7.94E-03
105GO:0006535: cysteine biosynthetic process from serine8.11E-03
106GO:0006995: cellular response to nitrogen starvation8.11E-03
107GO:0009688: abscisic acid biosynthetic process8.11E-03
108GO:0043069: negative regulation of programmed cell death8.11E-03
109GO:0043085: positive regulation of catalytic activity8.97E-03
110GO:0000272: polysaccharide catabolic process8.97E-03
111GO:0009750: response to fructose8.97E-03
112GO:0018119: peptidyl-cysteine S-nitrosylation8.97E-03
113GO:0019684: photosynthesis, light reaction8.97E-03
114GO:0006631: fatty acid metabolic process9.03E-03
115GO:0010114: response to red light9.80E-03
116GO:0009744: response to sucrose9.80E-03
117GO:0002213: defense response to insect9.88E-03
118GO:0016925: protein sumoylation9.88E-03
119GO:0006790: sulfur compound metabolic process9.88E-03
120GO:0006006: glucose metabolic process1.08E-02
121GO:0018107: peptidyl-threonine phosphorylation1.08E-02
122GO:0009718: anthocyanin-containing compound biosynthetic process1.08E-02
123GO:0009725: response to hormone1.08E-02
124GO:0009636: response to toxic substance1.10E-02
125GO:0005985: sucrose metabolic process1.28E-02
126GO:0046854: phosphatidylinositol phosphorylation1.28E-02
127GO:0007031: peroxisome organization1.28E-02
128GO:0042343: indole glucosinolate metabolic process1.28E-02
129GO:0009833: plant-type primary cell wall biogenesis1.38E-02
130GO:0042742: defense response to bacterium1.39E-02
131GO:0006857: oligopeptide transport1.42E-02
132GO:0006406: mRNA export from nucleus1.48E-02
133GO:0019344: cysteine biosynthetic process1.48E-02
134GO:0043086: negative regulation of catalytic activity1.57E-02
135GO:0009695: jasmonic acid biosynthetic process1.59E-02
136GO:0019953: sexual reproduction1.59E-02
137GO:0031408: oxylipin biosynthetic process1.70E-02
138GO:0051260: protein homooligomerization1.70E-02
139GO:0098542: defense response to other organism1.70E-02
140GO:0061077: chaperone-mediated protein folding1.70E-02
141GO:2000022: regulation of jasmonic acid mediated signaling pathway1.81E-02
142GO:0030433: ubiquitin-dependent ERAD pathway1.81E-02
143GO:0006730: one-carbon metabolic process1.81E-02
144GO:0030245: cellulose catabolic process1.81E-02
145GO:0010017: red or far-red light signaling pathway1.81E-02
146GO:0009693: ethylene biosynthetic process1.93E-02
147GO:0006396: RNA processing1.95E-02
148GO:0009306: protein secretion2.05E-02
149GO:0006817: phosphate ion transport2.05E-02
150GO:0070417: cellular response to cold2.17E-02
151GO:0006606: protein import into nucleus2.29E-02
152GO:0042631: cellular response to water deprivation2.29E-02
153GO:0009409: response to cold2.32E-02
154GO:0006520: cellular amino acid metabolic process2.42E-02
155GO:0006662: glycerol ether metabolic process2.42E-02
156GO:0010182: sugar mediated signaling pathway2.42E-02
157GO:0009058: biosynthetic process2.50E-02
158GO:0015986: ATP synthesis coupled proton transport2.54E-02
159GO:0007059: chromosome segregation2.54E-02
160GO:0009646: response to absence of light2.54E-02
161GO:0008654: phospholipid biosynthetic process2.67E-02
162GO:0005975: carbohydrate metabolic process2.81E-02
163GO:0046686: response to cadmium ion2.94E-02
164GO:0032502: developmental process2.94E-02
165GO:0007264: small GTPase mediated signal transduction2.94E-02
166GO:0010583: response to cyclopentenone2.94E-02
167GO:0031047: gene silencing by RNA2.94E-02
168GO:0006633: fatty acid biosynthetic process2.97E-02
169GO:0009567: double fertilization forming a zygote and endosperm3.22E-02
170GO:0051607: defense response to virus3.50E-02
171GO:0010027: thylakoid membrane organization3.65E-02
172GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.80E-02
173GO:0008380: RNA splicing3.89E-02
174GO:0010411: xyloglucan metabolic process4.10E-02
175GO:0030244: cellulose biosynthetic process4.41E-02
176GO:0018298: protein-chromophore linkage4.41E-02
177GO:0009735: response to cytokinin4.50E-02
178GO:0006499: N-terminal protein myristoylation4.72E-02
179GO:0009407: toxin catabolic process4.72E-02
180GO:0009910: negative regulation of flower development4.88E-02
RankGO TermAdjusted P value
1GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
2GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
3GO:0033840: NDP-glucose-starch glucosyltransferase activity0.00E+00
4GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
5GO:0004768: stearoyl-CoA 9-desaturase activity0.00E+00
6GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
7GO:0015284: fructose uniporter activity0.00E+00
8GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
9GO:0009540: zeaxanthin epoxidase [overall] activity0.00E+00
10GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
11GO:0030794: (S)-coclaurine-N-methyltransferase activity0.00E+00
12GO:0009673: low-affinity phosphate transmembrane transporter activity0.00E+00
13GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity3.65E-06
14GO:0004373: glycogen (starch) synthase activity1.31E-05
15GO:0051287: NAD binding2.53E-05
16GO:0016491: oxidoreductase activity4.92E-05
17GO:0009011: starch synthase activity5.29E-05
18GO:0004332: fructose-bisphosphate aldolase activity1.22E-04
19GO:0019899: enzyme binding2.19E-04
20GO:0080132: fatty acid alpha-hydroxylase activity2.82E-04
21GO:0010313: phytochrome binding2.82E-04
22GO:0003879: ATP phosphoribosyltransferase activity2.82E-04
23GO:0035671: enone reductase activity2.82E-04
24GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity2.82E-04
25GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity2.82E-04
26GO:0046906: tetrapyrrole binding2.82E-04
27GO:0090422: thiamine pyrophosphate transporter activity2.82E-04
28GO:0004013: adenosylhomocysteinase activity2.82E-04
29GO:0071949: FAD binding4.10E-04
30GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity4.86E-04
31GO:0008934: inositol monophosphate 1-phosphatase activity6.19E-04
32GO:0005353: fructose transmembrane transporter activity6.19E-04
33GO:0052833: inositol monophosphate 4-phosphatase activity6.19E-04
34GO:0005464: UDP-xylose transmembrane transporter activity6.19E-04
35GO:0008728: GTP diphosphokinase activity6.19E-04
36GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity6.19E-04
37GO:0050017: L-3-cyanoalanine synthase activity6.19E-04
38GO:0010297: heteropolysaccharide binding6.19E-04
39GO:0009977: proton motive force dependent protein transmembrane transporter activity6.19E-04
40GO:0004617: phosphoglycerate dehydrogenase activity6.19E-04
41GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity6.19E-04
42GO:0004047: aminomethyltransferase activity6.19E-04
43GO:0052832: inositol monophosphate 3-phosphatase activity6.19E-04
44GO:0033201: alpha-1,4-glucan synthase activity6.19E-04
45GO:0008479: queuine tRNA-ribosyltransferase activity6.19E-04
46GO:0018708: thiol S-methyltransferase activity6.19E-04
47GO:0004565: beta-galactosidase activity8.46E-04
48GO:0031072: heat shock protein binding8.46E-04
49GO:0016992: lipoate synthase activity1.00E-03
50GO:0003935: GTP cyclohydrolase II activity1.00E-03
51GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.00E-03
52GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity1.00E-03
53GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity1.00E-03
54GO:0071917: triose-phosphate transmembrane transporter activity1.00E-03
55GO:0008864: formyltetrahydrofolate deformylase activity1.00E-03
56GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.00E-03
57GO:0019948: SUMO activating enzyme activity1.00E-03
58GO:0010277: chlorophyllide a oxygenase [overall] activity1.00E-03
59GO:0022890: inorganic cation transmembrane transporter activity1.44E-03
60GO:0016851: magnesium chelatase activity1.44E-03
61GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.44E-03
62GO:0048027: mRNA 5'-UTR binding1.44E-03
63GO:0042802: identical protein binding1.83E-03
64GO:0015098: molybdate ion transmembrane transporter activity1.92E-03
65GO:0043495: protein anchor1.92E-03
66GO:0015120: phosphoglycerate transmembrane transporter activity1.92E-03
67GO:0003727: single-stranded RNA binding2.04E-03
68GO:0008168: methyltransferase activity2.33E-03
69GO:0045300: acyl-[acyl-carrier-protein] desaturase activity2.46E-03
70GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen2.46E-03
71GO:0004029: aldehyde dehydrogenase (NAD) activity3.03E-03
72GO:0035673: oligopeptide transmembrane transporter activity3.03E-03
73GO:0042578: phosphoric ester hydrolase activity3.03E-03
74GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.65E-03
75GO:0004124: cysteine synthase activity3.65E-03
76GO:0019843: rRNA binding4.38E-03
77GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water5.72E-03
78GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism6.48E-03
79GO:0016844: strictosidine synthase activity7.28E-03
80GO:0005507: copper ion binding7.52E-03
81GO:0030234: enzyme regulator activity8.11E-03
82GO:0015386: potassium:proton antiporter activity8.97E-03
83GO:0004364: glutathione transferase activity9.41E-03
84GO:0015198: oligopeptide transporter activity9.88E-03
85GO:0005315: inorganic phosphate transmembrane transporter activity1.08E-02
86GO:0051119: sugar transmembrane transporter activity1.28E-02
87GO:0005506: iron ion binding1.35E-02
88GO:0003690: double-stranded DNA binding1.37E-02
89GO:0005528: FK506 binding1.48E-02
90GO:0015079: potassium ion transmembrane transporter activity1.59E-02
91GO:0052689: carboxylic ester hydrolase activity1.72E-02
92GO:0051082: unfolded protein binding1.89E-02
93GO:0008810: cellulase activity1.93E-02
94GO:0016760: cellulose synthase (UDP-forming) activity1.93E-02
95GO:0022891: substrate-specific transmembrane transporter activity1.93E-02
96GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen2.10E-02
97GO:0047134: protein-disulfide reductase activity2.17E-02
98GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.42E-02
99GO:0008080: N-acetyltransferase activity2.42E-02
100GO:0015299: solute:proton antiporter activity2.54E-02
101GO:0050662: coenzyme binding2.54E-02
102GO:0004791: thioredoxin-disulfide reductase activity2.54E-02
103GO:0030170: pyridoxal phosphate binding2.63E-02
104GO:0004872: receptor activity2.67E-02
105GO:0016762: xyloglucan:xyloglucosyl transferase activity2.81E-02
106GO:0008565: protein transporter activity2.83E-02
107GO:0004518: nuclease activity2.94E-02
108GO:0046910: pectinesterase inhibitor activity3.05E-02
109GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.08E-02
110GO:0005525: GTP binding3.09E-02
111GO:0015297: antiporter activity3.12E-02
112GO:0016759: cellulose synthase activity3.22E-02
113GO:0008483: transaminase activity3.36E-02
114GO:0016722: oxidoreductase activity, oxidizing metal ions3.36E-02
115GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity3.36E-02
116GO:0016597: amino acid binding3.50E-02
117GO:0016168: chlorophyll binding3.80E-02
118GO:0016798: hydrolase activity, acting on glycosyl bonds4.10E-02
119GO:0003824: catalytic activity4.77E-02
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Gene type



Gene DE type