Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G42890

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010793: regulation of mRNA export from nucleus0.00E+00
2GO:0034756: regulation of iron ion transport0.00E+00
3GO:0046865: terpenoid transport0.00E+00
4GO:0072722: response to amitrole0.00E+00
5GO:0010055: atrichoblast differentiation0.00E+00
6GO:0002084: protein depalmitoylation0.00E+00
7GO:0043620: regulation of DNA-templated transcription in response to stress0.00E+00
8GO:2001253: regulation of histone H3-K36 trimethylation0.00E+00
9GO:1900056: negative regulation of leaf senescence1.50E-05
10GO:0009627: systemic acquired resistance1.82E-05
11GO:0009225: nucleotide-sugar metabolic process1.95E-04
12GO:0042742: defense response to bacterium2.30E-04
13GO:0006874: cellular calcium ion homeostasis3.02E-04
14GO:0071369: cellular response to ethylene stimulus4.35E-04
15GO:0006680: glucosylceramide catabolic process4.56E-04
16GO:0010230: alternative respiration4.56E-04
17GO:0032107: regulation of response to nutrient levels4.56E-04
18GO:0035266: meristem growth4.56E-04
19GO:0007292: female gamete generation4.56E-04
20GO:0099132: ATP hydrolysis coupled cation transmembrane transport4.56E-04
21GO:0009700: indole phytoalexin biosynthetic process4.56E-04
22GO:0010120: camalexin biosynthetic process6.84E-04
23GO:0006623: protein targeting to vacuole7.86E-04
24GO:0046686: response to cadmium ion8.46E-04
25GO:0008535: respiratory chain complex IV assembly9.85E-04
26GO:0051252: regulation of RNA metabolic process9.85E-04
27GO:0009156: ribonucleoside monophosphate biosynthetic process9.85E-04
28GO:0080183: response to photooxidative stress9.85E-04
29GO:0015709: thiosulfate transport9.85E-04
30GO:0071422: succinate transmembrane transport9.85E-04
31GO:0046939: nucleotide phosphorylation9.85E-04
32GO:0048569: post-embryonic animal organ development9.85E-04
33GO:0050684: regulation of mRNA processing9.85E-04
34GO:0042853: L-alanine catabolic process9.85E-04
35GO:0006672: ceramide metabolic process9.85E-04
36GO:0051788: response to misfolded protein9.85E-04
37GO:0009870: defense response signaling pathway, resistance gene-dependent1.12E-03
38GO:0006790: sulfur compound metabolic process1.48E-03
39GO:0055074: calcium ion homeostasis1.60E-03
40GO:0010253: UDP-rhamnose biosynthetic process1.60E-03
41GO:0006517: protein deglycosylation1.60E-03
42GO:0010272: response to silver ion1.60E-03
43GO:0015692: lead ion transport1.60E-03
44GO:0060968: regulation of gene silencing1.60E-03
45GO:0080168: abscisic acid transport1.60E-03
46GO:0071367: cellular response to brassinosteroid stimulus1.60E-03
47GO:0032784: regulation of DNA-templated transcription, elongation1.60E-03
48GO:0061158: 3'-UTR-mediated mRNA destabilization1.60E-03
49GO:0017006: protein-tetrapyrrole linkage1.60E-03
50GO:0046854: phosphatidylinositol phosphorylation2.13E-03
51GO:0006499: N-terminal protein myristoylation2.16E-03
52GO:0055089: fatty acid homeostasis2.32E-03
53GO:0000187: activation of MAPK activity2.32E-03
54GO:0015729: oxaloacetate transport2.32E-03
55GO:0009584: detection of visible light2.32E-03
56GO:0072334: UDP-galactose transmembrane transport2.32E-03
57GO:0010731: protein glutathionylation2.32E-03
58GO:0010104: regulation of ethylene-activated signaling pathway2.32E-03
59GO:0016310: phosphorylation2.96E-03
60GO:0009165: nucleotide biosynthetic process3.12E-03
61GO:0045227: capsule polysaccharide biosynthetic process3.12E-03
62GO:0033320: UDP-D-xylose biosynthetic process3.12E-03
63GO:0006536: glutamate metabolic process3.12E-03
64GO:0033358: UDP-L-arabinose biosynthetic process3.12E-03
65GO:0010363: regulation of plant-type hypersensitive response3.12E-03
66GO:0000919: cell plate assembly3.12E-03
67GO:0071456: cellular response to hypoxia3.50E-03
68GO:0009814: defense response, incompatible interaction3.50E-03
69GO:0030433: ubiquitin-dependent ERAD pathway3.50E-03
70GO:0051707: response to other organism3.57E-03
71GO:0010150: leaf senescence3.79E-03
72GO:0010227: floral organ abscission3.82E-03
73GO:0006012: galactose metabolic process3.82E-03
74GO:0071423: malate transmembrane transport4.00E-03
75GO:0006544: glycine metabolic process4.00E-03
76GO:0097428: protein maturation by iron-sulfur cluster transfer4.00E-03
77GO:0042147: retrograde transport, endosome to Golgi4.50E-03
78GO:0048579: negative regulation of long-day photoperiodism, flowering4.95E-03
79GO:0035435: phosphate ion transmembrane transport4.95E-03
80GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly4.95E-03
81GO:0006561: proline biosynthetic process4.95E-03
82GO:0006563: L-serine metabolic process4.95E-03
83GO:0048827: phyllome development4.95E-03
84GO:0048232: male gamete generation4.95E-03
85GO:0043248: proteasome assembly4.95E-03
86GO:0042732: D-xylose metabolic process4.95E-03
87GO:0060918: auxin transport4.95E-03
88GO:0006139: nucleobase-containing compound metabolic process4.95E-03
89GO:0042176: regulation of protein catabolic process4.95E-03
90GO:0010315: auxin efflux4.95E-03
91GO:0048544: recognition of pollen5.65E-03
92GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response5.98E-03
93GO:0048280: vesicle fusion with Golgi apparatus5.98E-03
94GO:0006891: intra-Golgi vesicle-mediated transport6.49E-03
95GO:0009626: plant-type hypersensitive response7.03E-03
96GO:0008272: sulfate transport7.07E-03
97GO:0080027: response to herbivore7.07E-03
98GO:0048528: post-embryonic root development7.07E-03
99GO:0080186: developmental vegetative growth7.07E-03
100GO:0015937: coenzyme A biosynthetic process7.07E-03
101GO:0000122: negative regulation of transcription from RNA polymerase II promoter7.07E-03
102GO:2000014: regulation of endosperm development7.07E-03
103GO:0006468: protein phosphorylation7.19E-03
104GO:0006511: ubiquitin-dependent protein catabolic process8.17E-03
105GO:0006491: N-glycan processing8.23E-03
106GO:0010078: maintenance of root meristem identity8.23E-03
107GO:2000070: regulation of response to water deprivation8.23E-03
108GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline8.23E-03
109GO:0009819: drought recovery8.23E-03
110GO:0016579: protein deubiquitination8.88E-03
111GO:0051607: defense response to virus8.88E-03
112GO:0009615: response to virus9.41E-03
113GO:0010204: defense response signaling pathway, resistance gene-independent9.45E-03
114GO:0006002: fructose 6-phosphate metabolic process9.45E-03
115GO:0001558: regulation of cell growth9.45E-03
116GO:0007186: G-protein coupled receptor signaling pathway9.45E-03
117GO:0009657: plastid organization9.45E-03
118GO:0010112: regulation of systemic acquired resistance1.07E-02
119GO:0015780: nucleotide-sugar transport1.07E-02
120GO:0006888: ER to Golgi vesicle-mediated transport1.11E-02
121GO:0008202: steroid metabolic process1.21E-02
122GO:0090332: stomatal closure1.21E-02
123GO:0035999: tetrahydrofolate interconversion1.21E-02
124GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway1.21E-02
125GO:0009817: defense response to fungus, incompatible interaction1.23E-02
126GO:0043069: negative regulation of programmed cell death1.35E-02
127GO:0048829: root cap development1.35E-02
128GO:0051555: flavonol biosynthetic process1.35E-02
129GO:0006896: Golgi to vacuole transport1.35E-02
130GO:0006032: chitin catabolic process1.35E-02
131GO:0009407: toxin catabolic process1.36E-02
132GO:0000272: polysaccharide catabolic process1.49E-02
133GO:0010015: root morphogenesis1.49E-02
134GO:0009089: lysine biosynthetic process via diaminopimelate1.49E-02
135GO:0072593: reactive oxygen species metabolic process1.49E-02
136GO:0045087: innate immune response1.57E-02
137GO:0009651: response to salt stress1.60E-02
138GO:0016925: protein sumoylation1.64E-02
139GO:0006890: retrograde vesicle-mediated transport, Golgi to ER1.64E-02
140GO:0008361: regulation of cell size1.64E-02
141GO:0010102: lateral root morphogenesis1.80E-02
142GO:2000028: regulation of photoperiodism, flowering1.80E-02
143GO:0055046: microgametogenesis1.80E-02
144GO:0009718: anthocyanin-containing compound biosynthetic process1.80E-02
145GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process1.80E-02
146GO:0006626: protein targeting to mitochondrion1.80E-02
147GO:0009933: meristem structural organization1.96E-02
148GO:0009266: response to temperature stimulus1.96E-02
149GO:0006541: glutamine metabolic process1.96E-02
150GO:0009617: response to bacterium2.06E-02
151GO:0071732: cellular response to nitric oxide2.13E-02
152GO:0090351: seedling development2.13E-02
153GO:0070588: calcium ion transmembrane transport2.13E-02
154GO:0010053: root epidermal cell differentiation2.13E-02
155GO:0042343: indole glucosinolate metabolic process2.13E-02
156GO:0010039: response to iron ion2.13E-02
157GO:0009636: response to toxic substance2.27E-02
158GO:0006636: unsaturated fatty acid biosynthetic process2.30E-02
159GO:0005992: trehalose biosynthetic process2.48E-02
160GO:0009116: nucleoside metabolic process2.48E-02
161GO:0042538: hyperosmotic salinity response2.54E-02
162GO:0006952: defense response2.57E-02
163GO:0051302: regulation of cell division2.66E-02
164GO:0050832: defense response to fungus2.73E-02
165GO:0016998: cell wall macromolecule catabolic process2.84E-02
166GO:0098542: defense response to other organism2.84E-02
167GO:0031408: oxylipin biosynthetic process2.84E-02
168GO:0080092: regulation of pollen tube growth3.03E-02
169GO:0010017: red or far-red light signaling pathway3.03E-02
170GO:0009625: response to insect3.23E-02
171GO:0006096: glycolytic process3.23E-02
172GO:0071215: cellular response to abscisic acid stimulus3.23E-02
173GO:0042127: regulation of cell proliferation3.42E-02
174GO:0016117: carotenoid biosynthetic process3.63E-02
175GO:0008284: positive regulation of cell proliferation3.63E-02
176GO:0010051: xylem and phloem pattern formation3.83E-02
177GO:0010197: polar nucleus fusion4.04E-02
178GO:0009958: positive gravitropism4.04E-02
179GO:0009960: endosperm development4.04E-02
180GO:0071472: cellular response to salt stress4.04E-02
181GO:0046777: protein autophosphorylation4.06E-02
182GO:0044550: secondary metabolite biosynthetic process4.14E-02
183GO:0009416: response to light stimulus4.27E-02
184GO:0010183: pollen tube guidance4.47E-02
185GO:0002229: defense response to oomycetes4.69E-02
186GO:0010193: response to ozone4.69E-02
187GO:0000302: response to reactive oxygen species4.69E-02
188GO:0009630: gravitropism4.92E-02
RankGO TermAdjusted P value
1GO:0010298: dihydrocamalexic acid decarboxylase activity0.00E+00
2GO:0019205: nucleobase-containing compound kinase activity0.00E+00
3GO:0051670: inulinase activity0.00E+00
4GO:0008092: cytoskeletal protein binding0.00E+00
5GO:0016301: kinase activity2.71E-06
6GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity3.16E-05
7GO:0009916: alternative oxidase activity1.19E-04
8GO:0005524: ATP binding1.59E-04
9GO:0005217: intracellular ligand-gated ion channel activity1.95E-04
10GO:0004970: ionotropic glutamate receptor activity1.95E-04
11GO:0030247: polysaccharide binding2.34E-04
12GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.49E-04
13GO:0031219: levanase activity4.56E-04
14GO:2001147: camalexin binding4.56E-04
15GO:0010285: L,L-diaminopimelate aminotransferase activity4.56E-04
16GO:2001227: quercitrin binding4.56E-04
17GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity4.56E-04
18GO:0051669: fructan beta-fructosidase activity4.56E-04
19GO:0048037: cofactor binding4.56E-04
20GO:0000386: second spliceosomal transesterification activity4.56E-04
21GO:0004348: glucosylceramidase activity4.56E-04
22GO:0004633: phosphopantothenoylcysteine decarboxylase activity4.56E-04
23GO:0004714: transmembrane receptor protein tyrosine kinase activity5.61E-04
24GO:0050377: UDP-glucose 4,6-dehydratase activity9.85E-04
25GO:1901677: phosphate transmembrane transporter activity9.85E-04
26GO:0015117: thiosulfate transmembrane transporter activity9.85E-04
27GO:0047443: 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity9.85E-04
28GO:0004776: succinate-CoA ligase (GDP-forming) activity9.85E-04
29GO:0004566: beta-glucuronidase activity9.85E-04
30GO:0009883: red or far-red light photoreceptor activity9.85E-04
31GO:0008460: dTDP-glucose 4,6-dehydratase activity9.85E-04
32GO:0052640: salicylic acid glucosyltransferase (glucoside-forming) activity9.85E-04
33GO:0010280: UDP-L-rhamnose synthase activity9.85E-04
34GO:0008428: ribonuclease inhibitor activity9.85E-04
35GO:0008805: carbon-monoxide oxygenase activity9.85E-04
36GO:0004775: succinate-CoA ligase (ADP-forming) activity9.85E-04
37GO:0004338: glucan exo-1,3-beta-glucosidase activity9.85E-04
38GO:0004568: chitinase activity1.12E-03
39GO:0015141: succinate transmembrane transporter activity1.60E-03
40GO:0008020: G-protein coupled photoreceptor activity1.60E-03
41GO:0005310: dicarboxylic acid transmembrane transporter activity1.60E-03
42GO:0004674: protein serine/threonine kinase activity1.68E-03
43GO:0004867: serine-type endopeptidase inhibitor activity2.13E-03
44GO:0008061: chitin binding2.13E-03
45GO:0004351: glutamate decarboxylase activity2.32E-03
46GO:0017077: oxidative phosphorylation uncoupler activity2.32E-03
47GO:0004749: ribose phosphate diphosphokinase activity2.32E-03
48GO:0019201: nucleotide kinase activity2.32E-03
49GO:0015131: oxaloacetate transmembrane transporter activity2.32E-03
50GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity2.32E-03
51GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides2.32E-03
52GO:0030246: carbohydrate binding2.61E-03
53GO:0030170: pyridoxal phosphate binding2.71E-03
54GO:0016004: phospholipase activator activity3.12E-03
55GO:0004930: G-protein coupled receptor activity3.12E-03
56GO:0050373: UDP-arabinose 4-epimerase activity3.12E-03
57GO:0046527: glucosyltransferase activity3.12E-03
58GO:0004576: oligosaccharyl transferase activity3.12E-03
59GO:0046872: metal ion binding3.69E-03
60GO:0008810: cellulase activity3.82E-03
61GO:0004040: amidase activity4.00E-03
62GO:0031386: protein tag4.00E-03
63GO:0005459: UDP-galactose transmembrane transporter activity4.00E-03
64GO:0004372: glycine hydroxymethyltransferase activity4.00E-03
65GO:0045300: acyl-[acyl-carrier-protein] desaturase activity4.00E-03
66GO:0008948: oxaloacetate decarboxylase activity4.00E-03
67GO:0003727: single-stranded RNA binding4.15E-03
68GO:0036402: proteasome-activating ATPase activity4.95E-03
69GO:0048040: UDP-glucuronate decarboxylase activity4.95E-03
70GO:0008474: palmitoyl-(protein) hydrolase activity4.95E-03
71GO:0016853: isomerase activity5.65E-03
72GO:0004656: procollagen-proline 4-dioxygenase activity5.98E-03
73GO:0003978: UDP-glucose 4-epimerase activity5.98E-03
74GO:0070403: NAD+ binding5.98E-03
75GO:0004017: adenylate kinase activity5.98E-03
76GO:0004872: receptor activity6.06E-03
77GO:0004843: thiol-dependent ubiquitin-specific protease activity6.49E-03
78GO:0043295: glutathione binding7.07E-03
79GO:0004620: phospholipase activity7.07E-03
80GO:0005338: nucleotide-sugar transmembrane transporter activity7.07E-03
81GO:0102425: myricetin 3-O-glucosyltransferase activity7.07E-03
82GO:0102360: daphnetin 3-O-glucosyltransferase activity7.07E-03
83GO:0016621: cinnamoyl-CoA reductase activity7.07E-03
84GO:0009881: photoreceptor activity7.07E-03
85GO:0003872: 6-phosphofructokinase activity7.07E-03
86GO:0015140: malate transmembrane transporter activity7.07E-03
87GO:0022857: transmembrane transporter activity7.60E-03
88GO:0004525: ribonuclease III activity8.23E-03
89GO:0004708: MAP kinase kinase activity8.23E-03
90GO:0004034: aldose 1-epimerase activity8.23E-03
91GO:0047893: flavonol 3-O-glucosyltransferase activity8.23E-03
92GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity8.37E-03
93GO:0043531: ADP binding8.48E-03
94GO:0008142: oxysterol binding9.45E-03
95GO:0004630: phospholipase D activity9.45E-03
96GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity9.45E-03
97GO:0004497: monooxygenase activity1.02E-02
98GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.13E-02
99GO:0030955: potassium ion binding1.21E-02
100GO:0004743: pyruvate kinase activity1.21E-02
101GO:0030234: enzyme regulator activity1.35E-02
102GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity1.35E-02
103GO:0008559: xenobiotic-transporting ATPase activity1.49E-02
104GO:0047372: acylglycerol lipase activity1.49E-02
105GO:0005089: Rho guanyl-nucleotide exchange factor activity1.49E-02
106GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen1.51E-02
107GO:0005509: calcium ion binding1.51E-02
108GO:0015116: sulfate transmembrane transporter activity1.64E-02
109GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.80E-02
110GO:0000155: phosphorelay sensor kinase activity1.80E-02
111GO:0005388: calcium-transporting ATPase activity1.80E-02
112GO:0004565: beta-galactosidase activity1.80E-02
113GO:0004364: glutathione transferase activity1.94E-02
114GO:0031624: ubiquitin conjugating enzyme binding1.96E-02
115GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.96E-02
116GO:0016740: transferase activity2.00E-02
117GO:0017025: TBP-class protein binding2.13E-02
118GO:0003712: transcription cofactor activity2.13E-02
119GO:0035091: phosphatidylinositol binding2.19E-02
120GO:0001046: core promoter sequence-specific DNA binding2.48E-02
121GO:0031418: L-ascorbic acid binding2.48E-02
122GO:0000287: magnesium ion binding2.79E-02
123GO:0008408: 3'-5' exonuclease activity2.84E-02
124GO:0035251: UDP-glucosyltransferase activity2.84E-02
125GO:0036459: thiol-dependent ubiquitinyl hydrolase activity2.84E-02
126GO:0004540: ribonuclease activity2.84E-02
127GO:0004298: threonine-type endopeptidase activity2.84E-02
128GO:0005516: calmodulin binding2.85E-02
129GO:0031625: ubiquitin protein ligase binding3.02E-02
130GO:0045735: nutrient reservoir activity3.23E-02
131GO:0005525: GTP binding3.31E-02
132GO:0004499: N,N-dimethylaniline monooxygenase activity3.42E-02
133GO:0080043: quercetin 3-O-glucosyltransferase activity3.55E-02
134GO:0080044: quercetin 7-O-glucosyltransferase activity3.55E-02
135GO:0047134: protein-disulfide reductase activity3.63E-02
136GO:0015035: protein disulfide oxidoreductase activity3.99E-02
137GO:0004527: exonuclease activity4.04E-02
138GO:0001085: RNA polymerase II transcription factor binding4.04E-02
139GO:0010181: FMN binding4.25E-02
140GO:0004791: thioredoxin-disulfide reductase activity4.25E-02
141GO:0005506: iron ion binding4.53E-02
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Gene type



Gene DE type