co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G42380

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
2	GO:0019988: charged-tRNA amino acid modification	0.00E+00
3	GO:0090615: mitochondrial mRNA processing	0.00E+00
4	GO:0000492: box C/D snoRNP assembly	0.00E+00
5	GO:0031222: arabinan catabolic process	0.00E+00
6	GO:0042794: rRNA transcription from plastid promoter	0.00E+00
7	GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	0.00E+00
8	GO:0045014: negative regulation of transcription by glucose	0.00E+00
9	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
10	GO:0000491: small nucleolar ribonucleoprotein complex assembly	0.00E+00
11	GO:0090627: plant epidermal cell differentiation	0.00E+00
12	GO:0009606: tropism	0.00E+00
13	GO:0090322: regulation of superoxide metabolic process	0.00E+00
14	GO:0000372: Group I intron splicing	0.00E+00
15	GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement	0.00E+00
16	GO:1903224: regulation of endodermal cell differentiation	0.00E+00
17	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
18	GO:0080127: fruit septum development	0.00E+00
19	GO:0045184: establishment of protein localization	0.00E+00
20	GO:0042793: transcription from plastid promoter	1.33E-07
21	GO:0010305: leaf vascular tissue pattern formation	1.01E-05
22	GO:0010569: regulation of double-strand break repair via homologous recombination	1.68E-05
23	GO:0006353: DNA-templated transcription, termination	4.77E-05
24	GO:0006518: peptide metabolic process	5.56E-05
25	GO:0009416: response to light stimulus	1.10E-04
26	GO:2000038: regulation of stomatal complex development	1.99E-04
27	GO:0009734: auxin-activated signaling pathway	2.10E-04
28	GO:0010588: cotyledon vascular tissue pattern formation	2.68E-04
29	GO:0009658: chloroplast organization	2.80E-04
30	GO:0009913: epidermal cell differentiation	4.21E-04
31	GO:0040008: regulation of growth	4.22E-04
32	GO:0010067: procambium histogenesis	5.59E-04
33	GO:0033206: meiotic cytokinesis	6.25E-04
34	GO:0035987: endodermal cell differentiation	6.25E-04
35	GO:0006436: tryptophanyl-tRNA aminoacylation	6.25E-04
36	GO:0015904: tetracycline transport	6.25E-04
37	GO:0034757: negative regulation of iron ion transport	6.25E-04
38	GO:0048016: inositol phosphate-mediated signaling	6.25E-04
39	GO:0042659: regulation of cell fate specification	6.25E-04
40	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	6.25E-04
41	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	6.25E-04
42	GO:1905039: carboxylic acid transmembrane transport	6.25E-04
43	GO:1905200: gibberellic acid transmembrane transport	6.25E-04
44	GO:0080112: seed growth	6.25E-04
45	GO:0090558: plant epidermis development	6.25E-04
46	GO:0010063: positive regulation of trichoblast fate specification	6.25E-04
47	GO:1903866: palisade mesophyll development	6.25E-04
48	GO:0006401: RNA catabolic process	7.14E-04
49	GO:0042127: regulation of cell proliferation	8.83E-04
50	GO:0042255: ribosome assembly	8.89E-04
51	GO:0046620: regulation of organ growth	8.89E-04
52	GO:0008033: tRNA processing	1.08E-03
53	GO:0009733: response to auxin	1.30E-03
54	GO:0009662: etioplast organization	1.34E-03
55	GO:1900033: negative regulation of trichome patterning	1.34E-03
56	GO:2000071: regulation of defense response by callose deposition	1.34E-03
57	GO:0080009: mRNA methylation	1.34E-03
58	GO:2000123: positive regulation of stomatal complex development	1.34E-03
59	GO:1901529: positive regulation of anion channel activity	1.34E-03
60	GO:0010271: regulation of chlorophyll catabolic process	1.34E-03
61	GO:0018026: peptidyl-lysine monomethylation	1.34E-03
62	GO:0048731: system development	1.34E-03
63	GO:1900865: chloroplast RNA modification	1.53E-03
64	GO:0080156: mitochondrial mRNA modification	1.55E-03
65	GO:0048829: root cap development	1.79E-03
66	GO:0006949: syncytium formation	1.79E-03
67	GO:0006364: rRNA processing	1.98E-03
68	GO:0009828: plant-type cell wall loosening	1.99E-03
69	GO:0046856: phosphatidylinositol dephosphorylation	2.07E-03
70	GO:0042780: tRNA 3'-end processing	2.21E-03
71	GO:0001578: microtubule bundle formation	2.21E-03
72	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	2.21E-03
73	GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement	2.21E-03
74	GO:0090708: specification of plant organ axis polarity	2.21E-03
75	GO:0080117: secondary growth	2.21E-03
76	GO:0044210: 'de novo' CTP biosynthetic process	2.21E-03
77	GO:0090391: granum assembly	2.21E-03
78	GO:1902290: positive regulation of defense response to oomycetes	3.22E-03
79	GO:0010371: regulation of gibberellin biosynthetic process	3.22E-03
80	GO:0010071: root meristem specification	3.22E-03
81	GO:0033169: histone H3-K9 demethylation	3.22E-03
82	GO:0009102: biotin biosynthetic process	3.22E-03
83	GO:0010239: chloroplast mRNA processing	3.22E-03
84	GO:0007276: gamete generation	3.22E-03
85	GO:0010306: rhamnogalacturonan II biosynthetic process	3.22E-03
86	GO:0043481: anthocyanin accumulation in tissues in response to UV light	3.22E-03
87	GO:0080188: RNA-directed DNA methylation	3.42E-03
88	GO:0048481: plant ovule development	3.51E-03
89	GO:2000377: regulation of reactive oxygen species metabolic process	4.24E-03
90	GO:0009956: radial pattern formation	4.34E-03
91	GO:0006808: regulation of nitrogen utilization	4.34E-03
92	GO:0006479: protein methylation	4.34E-03
93	GO:0048629: trichome patterning	4.34E-03
94	GO:1900864: mitochondrial RNA modification	4.34E-03
95	GO:0051322: anaphase	4.34E-03
96	GO:0030104: water homeostasis	4.34E-03
97	GO:0006221: pyrimidine nucleotide biosynthetic process	4.34E-03
98	GO:0003333: amino acid transmembrane transport	5.15E-03
99	GO:0048497: maintenance of floral organ identity	5.58E-03
100	GO:0016123: xanthophyll biosynthetic process	5.58E-03
101	GO:0032957: inositol trisphosphate metabolic process	5.58E-03
102	GO:0032876: negative regulation of DNA endoreduplication	5.58E-03
103	GO:0030308: negative regulation of cell growth	5.58E-03
104	GO:0010375: stomatal complex patterning	5.58E-03
105	GO:0080110: sporopollenin biosynthetic process	5.58E-03
106	GO:0016131: brassinosteroid metabolic process	5.58E-03
107	GO:0016120: carotene biosynthetic process	5.58E-03
108	GO:0030001: metal ion transport	5.62E-03
109	GO:2000022: regulation of jasmonic acid mediated signaling pathway	5.65E-03
110	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	6.16E-03
111	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	6.53E-03
112	GO:0009926: auxin polar transport	6.58E-03
113	GO:0006284: base-excision repair	6.71E-03
114	GO:0009643: photosynthetic acclimation	6.92E-03
115	GO:0046855: inositol phosphate dephosphorylation	6.92E-03
116	GO:0009959: negative gravitropism	6.92E-03
117	GO:0016554: cytidine to uridine editing	6.92E-03
118	GO:1902456: regulation of stomatal opening	6.92E-03
119	GO:0048831: regulation of shoot system development	6.92E-03
120	GO:0010315: auxin efflux	6.92E-03
121	GO:0003006: developmental process involved in reproduction	6.92E-03
122	GO:0010087: phloem or xylem histogenesis	7.88E-03
123	GO:0010118: stomatal movement	7.88E-03
124	GO:2000033: regulation of seed dormancy process	8.37E-03
125	GO:2000037: regulation of stomatal complex patterning	8.37E-03
126	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	8.37E-03
127	GO:0010310: regulation of hydrogen peroxide metabolic process	8.37E-03
128	GO:2000067: regulation of root morphogenesis	8.37E-03
129	GO:0048509: regulation of meristem development	8.37E-03
130	GO:0031347: regulation of defense response	8.41E-03
131	GO:0006468: protein phosphorylation	8.60E-03
132	GO:0009664: plant-type cell wall organization	8.81E-03
133	GO:0007018: microtubule-based movement	9.15E-03
134	GO:0009739: response to gibberellin	9.35E-03
135	GO:0048825: cotyledon development	9.82E-03
136	GO:0010103: stomatal complex morphogenesis	9.91E-03
137	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	9.91E-03
138	GO:0010374: stomatal complex development	9.91E-03
139	GO:0006955: immune response	9.91E-03
140	GO:0048437: floral organ development	9.91E-03
141	GO:0015937: coenzyme A biosynthetic process	9.91E-03
142	GO:0048766: root hair initiation	1.16E-02
143	GO:0010492: maintenance of shoot apical meristem identity	1.16E-02
144	GO:0055075: potassium ion homeostasis	1.16E-02
145	GO:0052543: callose deposition in cell wall	1.16E-02
146	GO:0009938: negative regulation of gibberellic acid mediated signaling pathway	1.16E-02
147	GO:0006402: mRNA catabolic process	1.16E-02
148	GO:0009787: regulation of abscisic acid-activated signaling pathway	1.16E-02
149	GO:0009642: response to light intensity	1.16E-02
150	GO:0048367: shoot system development	1.25E-02
151	GO:0009639: response to red or far red light	1.28E-02
152	GO:0032544: plastid translation	1.33E-02
153	GO:0007389: pattern specification process	1.33E-02
154	GO:0019430: removal of superoxide radicals	1.33E-02
155	GO:0009827: plant-type cell wall modification	1.33E-02
156	GO:0007186: G-protein coupled receptor signaling pathway	1.33E-02
157	GO:0010052: guard cell differentiation	1.33E-02
158	GO:0010233: phloem transport	1.33E-02
159	GO:0009657: plastid organization	1.33E-02
160	GO:0009740: gibberellic acid mediated signaling pathway	1.40E-02
161	GO:0000373: Group II intron splicing	1.51E-02
162	GO:0048589: developmental growth	1.51E-02
163	GO:0000902: cell morphogenesis	1.51E-02
164	GO:0009245: lipid A biosynthetic process	1.51E-02
165	GO:0048507: meristem development	1.51E-02
166	GO:0010027: thylakoid membrane organization	1.53E-02
167	GO:0010029: regulation of seed germination	1.62E-02
168	GO:1900426: positive regulation of defense response to bacterium	1.70E-02
169	GO:0042761: very long-chain fatty acid biosynthetic process	1.70E-02
170	GO:2000280: regulation of root development	1.70E-02
171	GO:0006349: regulation of gene expression by genetic imprinting	1.70E-02
172	GO:0031425: chloroplast RNA processing	1.70E-02
173	GO:0045036: protein targeting to chloroplast	1.90E-02
174	GO:0010048: vernalization response	1.90E-02
175	GO:0006535: cysteine biosynthetic process from serine	1.90E-02
176	GO:0009750: response to fructose	2.11E-02
177	GO:0009793: embryo development ending in seed dormancy	2.11E-02
178	GO:0048765: root hair cell differentiation	2.11E-02
179	GO:0009682: induced systemic resistance	2.11E-02
180	GO:1903507: negative regulation of nucleic acid-templated transcription	2.11E-02
181	GO:0015770: sucrose transport	2.11E-02
182	GO:0045037: protein import into chloroplast stroma	2.32E-02
183	GO:0010582: floral meristem determinacy	2.32E-02
184	GO:0008361: regulation of cell size	2.32E-02
185	GO:0012501: programmed cell death	2.32E-02
186	GO:0010152: pollen maturation	2.32E-02
187	GO:0006865: amino acid transport	2.43E-02
188	GO:0009790: embryo development	2.45E-02
189	GO:0009691: cytokinin biosynthetic process	2.54E-02
190	GO:0009767: photosynthetic electron transport chain	2.54E-02
191	GO:0009867: jasmonic acid mediated signaling pathway	2.54E-02
192	GO:0010102: lateral root morphogenesis	2.54E-02
193	GO:0006270: DNA replication initiation	2.77E-02
194	GO:0010223: secondary shoot formation	2.77E-02
195	GO:0009887: animal organ morphogenesis	2.77E-02
196	GO:0010540: basipetal auxin transport	2.77E-02
197	GO:0048467: gynoecium development	2.77E-02
198	GO:0010020: chloroplast fission	2.77E-02
199	GO:0009933: meristem structural organization	2.77E-02
200	GO:0045892: negative regulation of transcription, DNA-templated	2.82E-02
201	GO:0009825: multidimensional cell growth	3.01E-02
202	GO:0009901: anther dehiscence	3.01E-02
203	GO:0006833: water transport	3.25E-02
204	GO:0006636: unsaturated fatty acid biosynthetic process	3.25E-02
205	GO:0010187: negative regulation of seed germination	3.50E-02
206	GO:0019344: cysteine biosynthetic process	3.50E-02
207	GO:0080147: root hair cell development	3.50E-02
208	GO:0009863: salicylic acid mediated signaling pathway	3.50E-02
209	GO:0010073: meristem maintenance	3.75E-02
210	GO:0006825: copper ion transport	3.75E-02
211	GO:0051302: regulation of cell division	3.75E-02
212	GO:0019953: sexual reproduction	3.75E-02
213	GO:0006418: tRNA aminoacylation for protein translation	3.75E-02
214	GO:0006874: cellular calcium ion homeostasis	3.75E-02
215	GO:0008380: RNA splicing	3.77E-02
216	GO:0006397: mRNA processing	3.98E-02
217	GO:0016998: cell wall macromolecule catabolic process	4.01E-02
218	GO:0010431: seed maturation	4.01E-02
219	GO:0016567: protein ubiquitination	4.01E-02
220	GO:0001944: vasculature development	4.55E-02
221	GO:0071215: cellular response to abscisic acid stimulus	4.55E-02
222	GO:0010082: regulation of root meristem growth	4.55E-02
223	GO:0009686: gibberellin biosynthetic process	4.55E-02
224	GO:0010089: xylem development	4.83E-02
225	GO:0010584: pollen exine formation	4.83E-02
226	GO:0048443: stamen development	4.83E-02
227	GO:0009826: unidimensional cell growth	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0004015: adenosylmethionine-8-amino-7-oxononanoate transaminase activity	0.00E+00
2	GO:0043399: tRNA A64-2'-O-ribosylphosphate transferase activity	0.00E+00
3	GO:0016763: transferase activity, transferring pentosyl groups	0.00E+00
4	GO:0008859: exoribonuclease II activity	0.00E+00
5	GO:0071633: dihydroceramidase activity	0.00E+00
6	GO:0004141: dethiobiotin synthase activity	0.00E+00
7	GO:0004808: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity	0.00E+00
8	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
9	GO:0004930: G-protein coupled receptor activity	1.99E-04
10	GO:0008725: DNA-3-methyladenine glycosylase activity	3.01E-04
11	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	4.21E-04
12	GO:0003723: RNA binding	5.12E-04
13	GO:0052381: tRNA dimethylallyltransferase activity	6.25E-04
14	GO:0004830: tryptophan-tRNA ligase activity	6.25E-04
15	GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor	6.25E-04
16	GO:0004654: polyribonucleotide nucleotidyltransferase activity	6.25E-04
17	GO:0004016: adenylate cyclase activity	6.25E-04
18	GO:1905201: gibberellin transmembrane transporter activity	6.25E-04
19	GO:0004632: phosphopantothenate--cysteine ligase activity	6.25E-04
20	GO:0042834: peptidoglycan binding	6.25E-04
21	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	6.25E-04
22	GO:0046030: inositol trisphosphate phosphatase activity	6.25E-04
23	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	6.25E-04
24	GO:0016274: protein-arginine N-methyltransferase activity	6.25E-04
25	GO:0008395: steroid hydroxylase activity	6.25E-04
26	GO:0003727: single-stranded RNA binding	8.83E-04
27	GO:0009884: cytokinin receptor activity	1.34E-03
28	GO:0032454: histone demethylase activity (H3-K9 specific)	1.34E-03
29	GO:0042389: omega-3 fatty acid desaturase activity	1.34E-03
30	GO:0004809: tRNA (guanine-N2-)-methyltransferase activity	1.34E-03
31	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.34E-03
32	GO:0008805: carbon-monoxide oxygenase activity	1.34E-03
33	GO:0008493: tetracycline transporter activity	1.34E-03
34	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.34E-03
35	GO:0016805: dipeptidase activity	2.21E-03
36	GO:0005034: osmosensor activity	2.21E-03
37	GO:0016707: gibberellin 3-beta-dioxygenase activity	2.21E-03
38	GO:0017150: tRNA dihydrouridine synthase activity	2.21E-03
39	GO:0042781: 3'-tRNA processing endoribonuclease activity	2.21E-03
40	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	2.37E-03
41	GO:0003725: double-stranded RNA binding	2.70E-03
42	GO:0000175: 3'-5'-exoribonuclease activity	2.70E-03
43	GO:0001872: (1->3)-beta-D-glucan binding	3.22E-03
44	GO:0009041: uridylate kinase activity	3.22E-03
45	GO:0003883: CTP synthase activity	3.22E-03
46	GO:0004222: metalloendopeptidase activity	3.97E-03
47	GO:0046556: alpha-L-arabinofuranosidase activity	4.34E-03
48	GO:0016279: protein-lysine N-methyltransferase activity	4.34E-03
49	GO:0010011: auxin binding	4.34E-03
50	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	4.34E-03
51	GO:0010328: auxin influx transmembrane transporter activity	4.34E-03
52	GO:0004519: endonuclease activity	4.41E-03
53	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	5.58E-03
54	GO:0004888: transmembrane signaling receptor activity	5.58E-03
55	GO:0030570: pectate lyase activity	6.16E-03
56	GO:0003688: DNA replication origin binding	6.92E-03
57	GO:0031177: phosphopantetheine binding	6.92E-03
58	GO:0004784: superoxide dismutase activity	6.92E-03
59	GO:0019900: kinase binding	8.37E-03
60	GO:0004124: cysteine synthase activity	8.37E-03
61	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	8.37E-03
62	GO:0016832: aldehyde-lyase activity	8.37E-03
63	GO:0000035: acyl binding	8.37E-03
64	GO:0004871: signal transducer activity	9.15E-03
65	GO:0019901: protein kinase binding	9.82E-03
66	GO:0030515: snoRNA binding	9.91E-03
67	GO:0003777: microtubule motor activity	1.10E-02
68	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	1.16E-02
69	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	1.33E-02
70	GO:0004650: polygalacturonase activity	1.35E-02
71	GO:0000989: transcription factor activity, transcription factor binding	1.51E-02
72	GO:0031490: chromatin DNA binding	1.70E-02
73	GO:0009672: auxin:proton symporter activity	1.70E-02
74	GO:0043565: sequence-specific DNA binding	1.84E-02
75	GO:0004673: protein histidine kinase activity	1.90E-02
76	GO:0019843: rRNA binding	2.02E-02
77	GO:0008515: sucrose transmembrane transporter activity	2.11E-02
78	GO:0008289: lipid binding	2.14E-02
79	GO:0016829: lyase activity	2.23E-02
80	GO:0000976: transcription regulatory region sequence-specific DNA binding	2.32E-02
81	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.54E-02
82	GO:0031072: heat shock protein binding	2.54E-02
83	GO:0000155: phosphorelay sensor kinase activity	2.54E-02
84	GO:0010329: auxin efflux transmembrane transporter activity	2.54E-02
85	GO:0004022: alcohol dehydrogenase (NAD) activity	2.54E-02
86	GO:0003700: transcription factor activity, sequence-specific DNA binding	2.76E-02
87	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	2.77E-02
88	GO:0051119: sugar transmembrane transporter activity	3.01E-02
89	GO:0005217: intracellular ligand-gated ion channel activity	3.01E-02
90	GO:0004190: aspartic-type endopeptidase activity	3.01E-02
91	GO:0004970: ionotropic glutamate receptor activity	3.01E-02
92	GO:0008017: microtubule binding	3.20E-02
93	GO:0004674: protein serine/threonine kinase activity	3.28E-02
94	GO:0008134: transcription factor binding	3.50E-02
95	GO:0003714: transcription corepressor activity	3.50E-02
96	GO:0043621: protein self-association	3.55E-02
97	GO:0015293: symporter activity	3.68E-02
98	GO:0043424: protein histidine kinase binding	3.75E-02
99	GO:0004540: ribonuclease activity	4.01E-02
100	GO:0003690: double-stranded DNA binding	4.56E-02
101	GO:0015171: amino acid transmembrane transporter activity	4.87E-02
102	GO:0008168: methyltransferase activity	4.94E-02