GO Enrichment Analysis of Co-expressed Genes with
AT2G42300
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042794: rRNA transcription from plastid promoter | 0.00E+00 |
| 2 | GO:0044154: histone H3-K14 acetylation | 0.00E+00 |
| 3 | GO:0045014: negative regulation of transcription by glucose | 0.00E+00 |
| 4 | GO:0033473: indoleacetic acid conjugate metabolic process | 0.00E+00 |
| 5 | GO:1905615: positive regulation of developmental vegetative growth | 0.00E+00 |
| 6 | GO:1901698: response to nitrogen compound | 0.00E+00 |
| 7 | GO:0090322: regulation of superoxide metabolic process | 0.00E+00 |
| 8 | GO:0000372: Group I intron splicing | 0.00E+00 |
| 9 | GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement | 0.00E+00 |
| 10 | GO:0043972: histone H3-K23 acetylation | 0.00E+00 |
| 11 | GO:0080127: fruit septum development | 0.00E+00 |
| 12 | GO:0033206: meiotic cytokinesis | 0.00E+00 |
| 13 | GO:0009658: chloroplast organization | 8.47E-05 |
| 14 | GO:2000033: regulation of seed dormancy process | 1.67E-04 |
| 15 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 2.76E-04 |
| 16 | GO:0042255: ribosome assembly | 2.76E-04 |
| 17 | GO:0009938: negative regulation of gibberellic acid mediated signaling pathway | 2.76E-04 |
| 18 | GO:0006353: DNA-templated transcription, termination | 2.76E-04 |
| 19 | GO:0034757: negative regulation of iron ion transport | 2.82E-04 |
| 20 | GO:0006999: nuclear pore organization | 2.82E-04 |
| 21 | GO:0043971: histone H3-K18 acetylation | 2.82E-04 |
| 22 | GO:1903866: palisade mesophyll development | 2.82E-04 |
| 23 | GO:0036228: protein targeting to nuclear inner membrane | 2.82E-04 |
| 24 | GO:0048507: meristem development | 4.10E-04 |
| 25 | GO:0010029: regulation of seed germination | 6.00E-04 |
| 26 | GO:1901529: positive regulation of anion channel activity | 6.19E-04 |
| 27 | GO:0010569: regulation of double-strand break repair via homologous recombination | 6.19E-04 |
| 28 | GO:2000071: regulation of defense response by callose deposition | 6.19E-04 |
| 29 | GO:0010271: regulation of chlorophyll catabolic process | 6.19E-04 |
| 30 | GO:0080009: mRNA methylation | 6.19E-04 |
| 31 | GO:0009734: auxin-activated signaling pathway | 6.81E-04 |
| 32 | GO:0010588: cotyledon vascular tissue pattern formation | 8.46E-04 |
| 33 | GO:0010102: lateral root morphogenesis | 8.46E-04 |
| 34 | GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement | 1.00E-03 |
| 35 | GO:0080117: secondary growth | 1.00E-03 |
| 36 | GO:0071705: nitrogen compound transport | 1.00E-03 |
| 37 | GO:0090391: granum assembly | 1.00E-03 |
| 38 | GO:0009867: jasmonic acid mediated signaling pathway | 1.05E-03 |
| 39 | GO:0080188: RNA-directed DNA methylation | 1.06E-03 |
| 40 | GO:0040008: regulation of growth | 1.18E-03 |
| 41 | GO:0030001: metal ion transport | 1.23E-03 |
| 42 | GO:0009863: salicylic acid mediated signaling pathway | 1.30E-03 |
| 43 | GO:0010187: negative regulation of seed germination | 1.30E-03 |
| 44 | GO:2000377: regulation of reactive oxygen species metabolic process | 1.30E-03 |
| 45 | GO:0006166: purine ribonucleoside salvage | 1.44E-03 |
| 46 | GO:0007276: gamete generation | 1.44E-03 |
| 47 | GO:0043481: anthocyanin accumulation in tissues in response to UV light | 1.44E-03 |
| 48 | GO:1901332: negative regulation of lateral root development | 1.44E-03 |
| 49 | GO:0006168: adenine salvage | 1.44E-03 |
| 50 | GO:1902290: positive regulation of defense response to oomycetes | 1.44E-03 |
| 51 | GO:0010116: positive regulation of abscisic acid biosynthetic process | 1.44E-03 |
| 52 | GO:0009739: response to gibberellin | 1.50E-03 |
| 53 | GO:1900864: mitochondrial RNA modification | 1.92E-03 |
| 54 | GO:0071249: cellular response to nitrate | 1.92E-03 |
| 55 | GO:0006808: regulation of nitrogen utilization | 1.92E-03 |
| 56 | GO:0010501: RNA secondary structure unwinding | 2.39E-03 |
| 57 | GO:0010087: phloem or xylem histogenesis | 2.39E-03 |
| 58 | GO:0044209: AMP salvage | 2.46E-03 |
| 59 | GO:0016131: brassinosteroid metabolic process | 2.46E-03 |
| 60 | GO:0010305: leaf vascular tissue pattern formation | 2.58E-03 |
| 61 | GO:0048367: shoot system development | 2.71E-03 |
| 62 | GO:0016554: cytidine to uridine editing | 3.03E-03 |
| 63 | GO:0042176: regulation of protein catabolic process | 3.03E-03 |
| 64 | GO:1901371: regulation of leaf morphogenesis | 3.03E-03 |
| 65 | GO:0006655: phosphatidylglycerol biosynthetic process | 3.03E-03 |
| 66 | GO:0035435: phosphate ion transmembrane transport | 3.03E-03 |
| 67 | GO:0042793: transcription from plastid promoter | 3.03E-03 |
| 68 | GO:0048831: regulation of shoot system development | 3.03E-03 |
| 69 | GO:0003006: developmental process involved in reproduction | 3.03E-03 |
| 70 | GO:0009643: photosynthetic acclimation | 3.03E-03 |
| 71 | GO:0009740: gibberellic acid mediated signaling pathway | 3.05E-03 |
| 72 | GO:0002229: defense response to oomycetes | 3.18E-03 |
| 73 | GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity | 3.65E-03 |
| 74 | GO:0010310: regulation of hydrogen peroxide metabolic process | 3.65E-03 |
| 75 | GO:1901001: negative regulation of response to salt stress | 3.65E-03 |
| 76 | GO:0000911: cytokinesis by cell plate formation | 3.65E-03 |
| 77 | GO:0048509: regulation of meristem development | 3.65E-03 |
| 78 | GO:0009416: response to light stimulus | 4.06E-03 |
| 79 | GO:0010374: stomatal complex development | 4.30E-03 |
| 80 | GO:0006955: immune response | 4.30E-03 |
| 81 | GO:0010098: suspensor development | 4.30E-03 |
| 82 | GO:0010103: stomatal complex morphogenesis | 4.30E-03 |
| 83 | GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway | 4.30E-03 |
| 84 | GO:0009642: response to light intensity | 4.99E-03 |
| 85 | GO:0010492: maintenance of shoot apical meristem identity | 4.99E-03 |
| 86 | GO:0009733: response to auxin | 5.44E-03 |
| 87 | GO:0006355: regulation of transcription, DNA-templated | 5.44E-03 |
| 88 | GO:0009880: embryonic pattern specification | 5.72E-03 |
| 89 | GO:0009827: plant-type cell wall modification | 5.72E-03 |
| 90 | GO:0007186: G-protein coupled receptor signaling pathway | 5.72E-03 |
| 91 | GO:0010233: phloem transport | 5.72E-03 |
| 92 | GO:0010052: guard cell differentiation | 5.72E-03 |
| 93 | GO:0044030: regulation of DNA methylation | 5.72E-03 |
| 94 | GO:0006607: NLS-bearing protein import into nucleus | 6.48E-03 |
| 95 | GO:0009245: lipid A biosynthetic process | 6.48E-03 |
| 96 | GO:0000373: Group II intron splicing | 6.48E-03 |
| 97 | GO:0048589: developmental growth | 6.48E-03 |
| 98 | GO:0010218: response to far red light | 6.60E-03 |
| 99 | GO:0048364: root development | 6.61E-03 |
| 100 | GO:1900865: chloroplast RNA modification | 7.28E-03 |
| 101 | GO:0042761: very long-chain fatty acid biosynthetic process | 7.28E-03 |
| 102 | GO:0006349: regulation of gene expression by genetic imprinting | 7.28E-03 |
| 103 | GO:1900426: positive regulation of defense response to bacterium | 7.28E-03 |
| 104 | GO:0006949: syncytium formation | 8.11E-03 |
| 105 | GO:0006259: DNA metabolic process | 8.11E-03 |
| 106 | GO:0010048: vernalization response | 8.11E-03 |
| 107 | GO:0006535: cysteine biosynthetic process from serine | 8.11E-03 |
| 108 | GO:0048829: root cap development | 8.11E-03 |
| 109 | GO:0009682: induced systemic resistance | 8.97E-03 |
| 110 | GO:0006265: DNA topological change | 8.97E-03 |
| 111 | GO:0009750: response to fructose | 8.97E-03 |
| 112 | GO:0048765: root hair cell differentiation | 8.97E-03 |
| 113 | GO:0016024: CDP-diacylglycerol biosynthetic process | 9.88E-03 |
| 114 | GO:0010582: floral meristem determinacy | 9.88E-03 |
| 115 | GO:0015706: nitrate transport | 9.88E-03 |
| 116 | GO:0010152: pollen maturation | 9.88E-03 |
| 117 | GO:0010105: negative regulation of ethylene-activated signaling pathway | 9.88E-03 |
| 118 | GO:0006351: transcription, DNA-templated | 1.03E-02 |
| 119 | GO:0048467: gynoecium development | 1.18E-02 |
| 120 | GO:0010020: chloroplast fission | 1.18E-02 |
| 121 | GO:0006270: DNA replication initiation | 1.18E-02 |
| 122 | GO:0009887: animal organ morphogenesis | 1.18E-02 |
| 123 | GO:0010540: basipetal auxin transport | 1.18E-02 |
| 124 | GO:0031347: regulation of defense response | 1.19E-02 |
| 125 | GO:0042538: hyperosmotic salinity response | 1.23E-02 |
| 126 | GO:0010167: response to nitrate | 1.28E-02 |
| 127 | GO:0009723: response to ethylene | 1.39E-02 |
| 128 | GO:0019344: cysteine biosynthetic process | 1.48E-02 |
| 129 | GO:0000027: ribosomal large subunit assembly | 1.48E-02 |
| 130 | GO:0006874: cellular calcium ion homeostasis | 1.59E-02 |
| 131 | GO:0006825: copper ion transport | 1.59E-02 |
| 132 | GO:0003333: amino acid transmembrane transport | 1.70E-02 |
| 133 | GO:0016998: cell wall macromolecule catabolic process | 1.70E-02 |
| 134 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 1.81E-02 |
| 135 | GO:0045893: positive regulation of transcription, DNA-templated | 1.82E-02 |
| 136 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.93E-02 |
| 137 | GO:0071215: cellular response to abscisic acid stimulus | 1.93E-02 |
| 138 | GO:0045892: negative regulation of transcription, DNA-templated | 1.94E-02 |
| 139 | GO:0048443: stamen development | 2.05E-02 |
| 140 | GO:0006284: base-excision repair | 2.05E-02 |
| 141 | GO:0042127: regulation of cell proliferation | 2.05E-02 |
| 142 | GO:0006468: protein phosphorylation | 2.08E-02 |
| 143 | GO:0070417: cellular response to cold | 2.17E-02 |
| 144 | GO:0051028: mRNA transport | 2.17E-02 |
| 145 | GO:0010118: stomatal movement | 2.29E-02 |
| 146 | GO:0042335: cuticle development | 2.29E-02 |
| 147 | GO:0080022: primary root development | 2.29E-02 |
| 148 | GO:0008033: tRNA processing | 2.29E-02 |
| 149 | GO:0010051: xylem and phloem pattern formation | 2.29E-02 |
| 150 | GO:0009741: response to brassinosteroid | 2.42E-02 |
| 151 | GO:0010268: brassinosteroid homeostasis | 2.42E-02 |
| 152 | GO:0009960: endosperm development | 2.42E-02 |
| 153 | GO:0046323: glucose import | 2.42E-02 |
| 154 | GO:0006281: DNA repair | 2.48E-02 |
| 155 | GO:0007059: chromosome segregation | 2.54E-02 |
| 156 | GO:0048544: recognition of pollen | 2.54E-02 |
| 157 | GO:0007018: microtubule-based movement | 2.54E-02 |
| 158 | GO:0009749: response to glucose | 2.67E-02 |
| 159 | GO:0008654: phospholipid biosynthetic process | 2.67E-02 |
| 160 | GO:0009790: embryo development | 2.76E-02 |
| 161 | GO:0080156: mitochondrial mRNA modification | 2.81E-02 |
| 162 | GO:0032502: developmental process | 2.94E-02 |
| 163 | GO:0010090: trichome morphogenesis | 3.08E-02 |
| 164 | GO:0019760: glucosinolate metabolic process | 3.22E-02 |
| 165 | GO:0010252: auxin homeostasis | 3.22E-02 |
| 166 | GO:0009828: plant-type cell wall loosening | 3.22E-02 |
| 167 | GO:0045490: pectin catabolic process | 3.27E-02 |
| 168 | GO:0001666: response to hypoxia | 3.65E-02 |
| 169 | GO:0010027: thylakoid membrane organization | 3.65E-02 |
| 170 | GO:0008380: RNA splicing | 3.89E-02 |
| 171 | GO:0009617: response to bacterium | 3.89E-02 |
| 172 | GO:0009414: response to water deprivation | 4.03E-02 |
| 173 | GO:0016311: dephosphorylation | 4.25E-02 |
| 174 | GO:0009651: response to salt stress | 4.35E-02 |
| 175 | GO:0048481: plant ovule development | 4.41E-02 |
| 176 | GO:0048767: root hair elongation | 4.56E-02 |
| 177 | GO:0000160: phosphorelay signal transduction system | 4.56E-02 |
| 178 | GO:0006811: ion transport | 4.72E-02 |
| 179 | GO:0009738: abscisic acid-activated signaling pathway | 4.82E-02 |
| 180 | GO:0009910: negative regulation of flower development | 4.88E-02 |
| 181 | GO:0009737: response to abscisic acid | 4.90E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0003723: RNA binding | 8.86E-05 |
| 2 | GO:0003727: single-stranded RNA binding | 1.88E-04 |
| 3 | GO:0004016: adenylate cyclase activity | 2.82E-04 |
| 4 | GO:0042834: peptidoglycan binding | 2.82E-04 |
| 5 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 2.82E-04 |
| 6 | GO:0008395: steroid hydroxylase activity | 2.82E-04 |
| 7 | GO:0034335: DNA supercoiling activity | 2.82E-04 |
| 8 | GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor | 2.82E-04 |
| 9 | GO:0000989: transcription factor activity, transcription factor binding | 4.10E-04 |
| 10 | GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity | 6.19E-04 |
| 11 | GO:0009884: cytokinin receptor activity | 6.19E-04 |
| 12 | GO:0004809: tRNA (guanine-N2-)-methyltransferase activity | 6.19E-04 |
| 13 | GO:0004180: carboxypeptidase activity | 1.00E-03 |
| 14 | GO:0070181: small ribosomal subunit rRNA binding | 1.00E-03 |
| 15 | GO:0016805: dipeptidase activity | 1.00E-03 |
| 16 | GO:0005034: osmosensor activity | 1.00E-03 |
| 17 | GO:0003697: single-stranded DNA binding | 1.05E-03 |
| 18 | GO:0003700: transcription factor activity, sequence-specific DNA binding | 1.40E-03 |
| 19 | GO:0005354: galactose transmembrane transporter activity | 1.44E-03 |
| 20 | GO:0003916: DNA topoisomerase activity | 1.44E-03 |
| 21 | GO:0003999: adenine phosphoribosyltransferase activity | 1.44E-03 |
| 22 | GO:0030570: pectate lyase activity | 1.88E-03 |
| 23 | GO:0010011: auxin binding | 1.92E-03 |
| 24 | GO:0010385: double-stranded methylated DNA binding | 1.92E-03 |
| 25 | GO:0004930: G-protein coupled receptor activity | 1.92E-03 |
| 26 | GO:0003690: double-stranded DNA binding | 2.19E-03 |
| 27 | GO:0008725: DNA-3-methyladenine glycosylase activity | 2.46E-03 |
| 28 | GO:0003688: DNA replication origin binding | 3.03E-03 |
| 29 | GO:0004605: phosphatidate cytidylyltransferase activity | 3.03E-03 |
| 30 | GO:0080030: methyl indole-3-acetate esterase activity | 3.03E-03 |
| 31 | GO:0043140: ATP-dependent 3'-5' DNA helicase activity | 3.03E-03 |
| 32 | GO:0031177: phosphopantetheine binding | 3.03E-03 |
| 33 | GO:0009378: four-way junction helicase activity | 3.03E-03 |
| 34 | GO:0004124: cysteine synthase activity | 3.65E-03 |
| 35 | GO:0000035: acyl binding | 3.65E-03 |
| 36 | GO:0019900: kinase binding | 3.65E-03 |
| 37 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 4.99E-03 |
| 38 | GO:0017056: structural constituent of nuclear pore | 4.99E-03 |
| 39 | GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding | 5.17E-03 |
| 40 | GO:0003677: DNA binding | 5.22E-03 |
| 41 | GO:0004004: ATP-dependent RNA helicase activity | 5.40E-03 |
| 42 | GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity | 5.72E-03 |
| 43 | GO:0009672: auxin:proton symporter activity | 7.28E-03 |
| 44 | GO:0005487: nucleocytoplasmic transporter activity | 7.28E-03 |
| 45 | GO:0004673: protein histidine kinase activity | 8.11E-03 |
| 46 | GO:0009982: pseudouridine synthase activity | 1.08E-02 |
| 47 | GO:0015114: phosphate ion transmembrane transporter activity | 1.08E-02 |
| 48 | GO:0010329: auxin efflux transmembrane transporter activity | 1.08E-02 |
| 49 | GO:0003725: double-stranded RNA binding | 1.08E-02 |
| 50 | GO:0000155: phosphorelay sensor kinase activity | 1.08E-02 |
| 51 | GO:0005217: intracellular ligand-gated ion channel activity | 1.28E-02 |
| 52 | GO:0004970: ionotropic glutamate receptor activity | 1.28E-02 |
| 53 | GO:0043424: protein histidine kinase binding | 1.59E-02 |
| 54 | GO:0004674: protein serine/threonine kinase activity | 1.67E-02 |
| 55 | GO:0043565: sequence-specific DNA binding | 1.82E-02 |
| 56 | GO:0003779: actin binding | 1.83E-02 |
| 57 | GO:0008026: ATP-dependent helicase activity | 2.00E-02 |
| 58 | GO:0042803: protein homodimerization activity | 2.02E-02 |
| 59 | GO:0018024: histone-lysine N-methyltransferase activity | 2.17E-02 |
| 60 | GO:0004402: histone acetyltransferase activity | 2.29E-02 |
| 61 | GO:0019843: rRNA binding | 2.37E-02 |
| 62 | GO:0001085: RNA polymerase II transcription factor binding | 2.42E-02 |
| 63 | GO:0010181: FMN binding | 2.54E-02 |
| 64 | GO:0005355: glucose transmembrane transporter activity | 2.54E-02 |
| 65 | GO:0016829: lyase activity | 2.56E-02 |
| 66 | GO:0019901: protein kinase binding | 2.67E-02 |
| 67 | GO:0048038: quinone binding | 2.81E-02 |
| 68 | GO:0004518: nuclease activity | 2.94E-02 |
| 69 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 4.72E-02 |
| 70 | GO:0008168: methyltransferase activity | 4.84E-02 |
| 71 | GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 4.88E-02 |