GO Enrichment Analysis of Co-expressed Genes with
AT2G42290
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090615: mitochondrial mRNA processing | 0.00E+00 |
| 2 | GO:0042794: rRNA transcription from plastid promoter | 0.00E+00 |
| 3 | GO:0046719: regulation by virus of viral protein levels in host cell | 0.00E+00 |
| 4 | GO:0035884: arabinan biosynthetic process | 0.00E+00 |
| 5 | GO:0097164: ammonium ion metabolic process | 0.00E+00 |
| 6 | GO:0010059: positive regulation of atrichoblast fate specification | 0.00E+00 |
| 7 | GO:0090627: plant epidermal cell differentiation | 0.00E+00 |
| 8 | GO:0009606: tropism | 0.00E+00 |
| 9 | GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) | 0.00E+00 |
| 10 | GO:0042793: transcription from plastid promoter | 1.58E-08 |
| 11 | GO:0009658: chloroplast organization | 2.11E-06 |
| 12 | GO:1901259: chloroplast rRNA processing | 4.37E-06 |
| 13 | GO:0007389: pattern specification process | 1.52E-05 |
| 14 | GO:2000038: regulation of stomatal complex development | 7.15E-05 |
| 15 | GO:0009913: epidermal cell differentiation | 1.62E-04 |
| 16 | GO:0006955: immune response | 2.86E-04 |
| 17 | GO:0048437: floral organ development | 2.86E-04 |
| 18 | GO:0034757: negative regulation of iron ion transport | 3.37E-04 |
| 19 | GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic | 3.37E-04 |
| 20 | GO:0080112: seed growth | 3.37E-04 |
| 21 | GO:1903866: palisade mesophyll development | 3.37E-04 |
| 22 | GO:1905039: carboxylic acid transmembrane transport | 3.37E-04 |
| 23 | GO:1905200: gibberellic acid transmembrane transport | 3.37E-04 |
| 24 | GO:0010063: positive regulation of trichoblast fate specification | 3.37E-04 |
| 25 | GO:0010480: microsporocyte differentiation | 3.37E-04 |
| 26 | GO:0006436: tryptophanyl-tRNA aminoacylation | 3.37E-04 |
| 27 | GO:0042255: ribosome assembly | 3.60E-04 |
| 28 | GO:0009451: RNA modification | 3.88E-04 |
| 29 | GO:0032502: developmental process | 5.28E-04 |
| 30 | GO:0010252: auxin homeostasis | 6.20E-04 |
| 31 | GO:1900865: chloroplast RNA modification | 6.25E-04 |
| 32 | GO:2000123: positive regulation of stomatal complex development | 7.34E-04 |
| 33 | GO:0010254: nectary development | 7.34E-04 |
| 34 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 7.34E-04 |
| 35 | GO:0010569: regulation of double-strand break repair via homologous recombination | 7.34E-04 |
| 36 | GO:0010434: bract formation | 7.34E-04 |
| 37 | GO:0048439: flower morphogenesis | 7.34E-04 |
| 38 | GO:0070981: L-asparagine biosynthetic process | 7.34E-04 |
| 39 | GO:0010271: regulation of chlorophyll catabolic process | 7.34E-04 |
| 40 | GO:0018026: peptidyl-lysine monomethylation | 7.34E-04 |
| 41 | GO:0009662: etioplast organization | 7.34E-04 |
| 42 | GO:1900033: negative regulation of trichome patterning | 7.34E-04 |
| 43 | GO:1904143: positive regulation of carotenoid biosynthetic process | 7.34E-04 |
| 44 | GO:0080009: mRNA methylation | 7.34E-04 |
| 45 | GO:0006529: asparagine biosynthetic process | 7.34E-04 |
| 46 | GO:0009875: pollen-pistil interaction | 7.34E-04 |
| 47 | GO:0042254: ribosome biogenesis | 8.43E-04 |
| 48 | GO:0009734: auxin-activated signaling pathway | 1.15E-03 |
| 49 | GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic | 1.19E-03 |
| 50 | GO:0080117: secondary growth | 1.19E-03 |
| 51 | GO:0090391: granum assembly | 1.19E-03 |
| 52 | GO:0006518: peptide metabolic process | 1.19E-03 |
| 53 | GO:0042780: tRNA 3'-end processing | 1.19E-03 |
| 54 | GO:0009954: proximal/distal pattern formation | 1.19E-03 |
| 55 | GO:0010020: chloroplast fission | 1.22E-03 |
| 56 | GO:0009944: polarity specification of adaxial/abaxial axis | 1.68E-03 |
| 57 | GO:0010071: root meristem specification | 1.71E-03 |
| 58 | GO:0051513: regulation of monopolar cell growth | 1.71E-03 |
| 59 | GO:0010239: chloroplast mRNA processing | 1.71E-03 |
| 60 | GO:0009800: cinnamic acid biosynthetic process | 1.71E-03 |
| 61 | GO:0046739: transport of virus in multicellular host | 1.71E-03 |
| 62 | GO:0043572: plastid fission | 1.71E-03 |
| 63 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 1.71E-03 |
| 64 | GO:0010371: regulation of gibberellin biosynthetic process | 1.71E-03 |
| 65 | GO:1902476: chloride transmembrane transport | 1.71E-03 |
| 66 | GO:0009416: response to light stimulus | 1.81E-03 |
| 67 | GO:0009926: auxin polar transport | 2.01E-03 |
| 68 | GO:0016998: cell wall macromolecule catabolic process | 2.04E-03 |
| 69 | GO:1900864: mitochondrial RNA modification | 2.30E-03 |
| 70 | GO:0006479: protein methylation | 2.30E-03 |
| 71 | GO:0048629: trichome patterning | 2.30E-03 |
| 72 | GO:0008380: RNA splicing | 2.48E-03 |
| 73 | GO:1902183: regulation of shoot apical meristem development | 2.93E-03 |
| 74 | GO:0032876: negative regulation of DNA endoreduplication | 2.93E-03 |
| 75 | GO:0030308: negative regulation of cell growth | 2.93E-03 |
| 76 | GO:0010375: stomatal complex patterning | 2.93E-03 |
| 77 | GO:0048497: maintenance of floral organ identity | 2.93E-03 |
| 78 | GO:0009646: response to absence of light | 3.59E-03 |
| 79 | GO:0009959: negative gravitropism | 3.63E-03 |
| 80 | GO:0016554: cytidine to uridine editing | 3.63E-03 |
| 81 | GO:0010315: auxin efflux | 3.63E-03 |
| 82 | GO:0006559: L-phenylalanine catabolic process | 3.63E-03 |
| 83 | GO:0048831: regulation of shoot system development | 3.63E-03 |
| 84 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 3.63E-03 |
| 85 | GO:0048825: cotyledon development | 3.85E-03 |
| 86 | GO:0080156: mitochondrial mRNA modification | 4.12E-03 |
| 87 | GO:2000037: regulation of stomatal complex patterning | 4.37E-03 |
| 88 | GO:0009955: adaxial/abaxial pattern specification | 4.37E-03 |
| 89 | GO:0009082: branched-chain amino acid biosynthetic process | 4.37E-03 |
| 90 | GO:0009942: longitudinal axis specification | 4.37E-03 |
| 91 | GO:0048509: regulation of meristem development | 4.37E-03 |
| 92 | GO:0009099: valine biosynthetic process | 4.37E-03 |
| 93 | GO:0030488: tRNA methylation | 4.37E-03 |
| 94 | GO:0010583: response to cyclopentenone | 4.40E-03 |
| 95 | GO:0006821: chloride transport | 5.15E-03 |
| 96 | GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway | 5.15E-03 |
| 97 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 5.38E-03 |
| 98 | GO:0010027: thylakoid membrane organization | 5.96E-03 |
| 99 | GO:0052543: callose deposition in cell wall | 5.99E-03 |
| 100 | GO:0009642: response to light intensity | 5.99E-03 |
| 101 | GO:0030162: regulation of proteolysis | 5.99E-03 |
| 102 | GO:0006353: DNA-templated transcription, termination | 5.99E-03 |
| 103 | GO:0048766: root hair initiation | 5.99E-03 |
| 104 | GO:0001522: pseudouridine synthesis | 5.99E-03 |
| 105 | GO:0006412: translation | 6.54E-03 |
| 106 | GO:0010497: plasmodesmata-mediated intercellular transport | 6.87E-03 |
| 107 | GO:0009657: plastid organization | 6.87E-03 |
| 108 | GO:0009097: isoleucine biosynthetic process | 6.87E-03 |
| 109 | GO:0048481: plant ovule development | 7.79E-03 |
| 110 | GO:2000024: regulation of leaf development | 7.79E-03 |
| 111 | GO:0000373: Group II intron splicing | 7.79E-03 |
| 112 | GO:0000902: cell morphogenesis | 7.79E-03 |
| 113 | GO:0000160: phosphorelay signal transduction system | 8.19E-03 |
| 114 | GO:0006349: regulation of gene expression by genetic imprinting | 8.75E-03 |
| 115 | GO:0010048: vernalization response | 9.76E-03 |
| 116 | GO:0048829: root cap development | 9.76E-03 |
| 117 | GO:0048364: root development | 9.86E-03 |
| 118 | GO:0015770: sucrose transport | 1.08E-02 |
| 119 | GO:0048229: gametophyte development | 1.08E-02 |
| 120 | GO:0008361: regulation of cell size | 1.19E-02 |
| 121 | GO:0045037: protein import into chloroplast stroma | 1.19E-02 |
| 122 | GO:0010582: floral meristem determinacy | 1.19E-02 |
| 123 | GO:0010588: cotyledon vascular tissue pattern formation | 1.30E-02 |
| 124 | GO:0009691: cytokinin biosynthetic process | 1.30E-02 |
| 125 | GO:0010075: regulation of meristem growth | 1.30E-02 |
| 126 | GO:0009934: regulation of meristem structural organization | 1.42E-02 |
| 127 | GO:0006541: glutamine metabolic process | 1.42E-02 |
| 128 | GO:0010207: photosystem II assembly | 1.42E-02 |
| 129 | GO:0080188: RNA-directed DNA methylation | 1.54E-02 |
| 130 | GO:0009901: anther dehiscence | 1.54E-02 |
| 131 | GO:0006071: glycerol metabolic process | 1.66E-02 |
| 132 | GO:0009736: cytokinin-activated signaling pathway | 1.73E-02 |
| 133 | GO:0000027: ribosomal large subunit assembly | 1.79E-02 |
| 134 | GO:0080147: root hair cell development | 1.79E-02 |
| 135 | GO:0006418: tRNA aminoacylation for protein translation | 1.92E-02 |
| 136 | GO:0048366: leaf development | 1.98E-02 |
| 137 | GO:0010431: seed maturation | 2.05E-02 |
| 138 | GO:0003333: amino acid transmembrane transport | 2.05E-02 |
| 139 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 2.33E-02 |
| 140 | GO:0071215: cellular response to abscisic acid stimulus | 2.33E-02 |
| 141 | GO:0010082: regulation of root meristem growth | 2.33E-02 |
| 142 | GO:0010227: floral organ abscission | 2.33E-02 |
| 143 | GO:0009553: embryo sac development | 2.39E-02 |
| 144 | GO:0006284: base-excision repair | 2.47E-02 |
| 145 | GO:0042127: regulation of cell proliferation | 2.47E-02 |
| 146 | GO:0070417: cellular response to cold | 2.62E-02 |
| 147 | GO:0048653: anther development | 2.77E-02 |
| 148 | GO:0042631: cellular response to water deprivation | 2.77E-02 |
| 149 | GO:0008033: tRNA processing | 2.77E-02 |
| 150 | GO:0010501: RNA secondary structure unwinding | 2.77E-02 |
| 151 | GO:0010087: phloem or xylem histogenesis | 2.77E-02 |
| 152 | GO:0009741: response to brassinosteroid | 2.92E-02 |
| 153 | GO:0009960: endosperm development | 2.92E-02 |
| 154 | GO:0010305: leaf vascular tissue pattern formation | 2.92E-02 |
| 155 | GO:0009958: positive gravitropism | 2.92E-02 |
| 156 | GO:0007018: microtubule-based movement | 3.07E-02 |
| 157 | GO:0006814: sodium ion transport | 3.07E-02 |
| 158 | GO:0055085: transmembrane transport | 3.11E-02 |
| 159 | GO:0010183: pollen tube guidance | 3.23E-02 |
| 160 | GO:0009845: seed germination | 3.33E-02 |
| 161 | GO:0009630: gravitropism | 3.55E-02 |
| 162 | GO:0009793: embryo development ending in seed dormancy | 3.59E-02 |
| 163 | GO:0010090: trichome morphogenesis | 3.72E-02 |
| 164 | GO:0009639: response to red or far red light | 3.88E-02 |
| 165 | GO:0009828: plant-type cell wall loosening | 3.88E-02 |
| 166 | GO:0040008: regulation of growth | 4.05E-02 |
| 167 | GO:0007267: cell-cell signaling | 4.05E-02 |
| 168 | GO:0010029: regulation of seed germination | 4.58E-02 |
| 169 | GO:0006355: regulation of transcription, DNA-templated | 4.76E-02 |
| 170 | GO:0007166: cell surface receptor signaling pathway | 4.84E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042834: peptidoglycan binding | 0.00E+00 |
| 2 | GO:0003727: single-stranded RNA binding | 1.55E-05 |
| 3 | GO:0009672: auxin:proton symporter activity | 2.79E-05 |
| 4 | GO:0010329: auxin efflux transmembrane transporter activity | 7.09E-05 |
| 5 | GO:0003735: structural constituent of ribosome | 1.38E-04 |
| 6 | GO:0004519: endonuclease activity | 1.52E-04 |
| 7 | GO:0019843: rRNA binding | 2.00E-04 |
| 8 | GO:0004016: adenylate cyclase activity | 3.37E-04 |
| 9 | GO:1905201: gibberellin transmembrane transporter activity | 3.37E-04 |
| 10 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 3.37E-04 |
| 11 | GO:0004071: aspartate-ammonia ligase activity | 3.37E-04 |
| 12 | GO:0052381: tRNA dimethylallyltransferase activity | 3.37E-04 |
| 13 | GO:0004160: dihydroxy-acid dehydratase activity | 3.37E-04 |
| 14 | GO:0016274: protein-arginine N-methyltransferase activity | 3.37E-04 |
| 15 | GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity | 3.37E-04 |
| 16 | GO:0004830: tryptophan-tRNA ligase activity | 3.37E-04 |
| 17 | GO:0003723: RNA binding | 7.10E-04 |
| 18 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 7.34E-04 |
| 19 | GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity | 7.34E-04 |
| 20 | GO:0009884: cytokinin receptor activity | 7.34E-04 |
| 21 | GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity | 7.34E-04 |
| 22 | GO:0009982: pseudouridine synthase activity | 1.08E-03 |
| 23 | GO:0017150: tRNA dihydrouridine synthase activity | 1.19E-03 |
| 24 | GO:0045548: phenylalanine ammonia-lyase activity | 1.19E-03 |
| 25 | GO:0042781: 3'-tRNA processing endoribonuclease activity | 1.19E-03 |
| 26 | GO:0032549: ribonucleoside binding | 1.19E-03 |
| 27 | GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity | 1.19E-03 |
| 28 | GO:0005034: osmosensor activity | 1.19E-03 |
| 29 | GO:0070180: large ribosomal subunit rRNA binding | 1.19E-03 |
| 30 | GO:0008508: bile acid:sodium symporter activity | 1.71E-03 |
| 31 | GO:0016836: hydro-lyase activity | 2.30E-03 |
| 32 | GO:0005253: anion channel activity | 2.30E-03 |
| 33 | GO:0016279: protein-lysine N-methyltransferase activity | 2.30E-03 |
| 34 | GO:0005215: transporter activity | 2.91E-03 |
| 35 | GO:0008725: DNA-3-methyladenine glycosylase activity | 2.93E-03 |
| 36 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 2.93E-03 |
| 37 | GO:0003777: microtubule motor activity | 3.34E-03 |
| 38 | GO:0005247: voltage-gated chloride channel activity | 3.63E-03 |
| 39 | GO:0019901: protein kinase binding | 3.85E-03 |
| 40 | GO:0019900: kinase binding | 4.37E-03 |
| 41 | GO:0008173: RNA methyltransferase activity | 6.87E-03 |
| 42 | GO:0008889: glycerophosphodiester phosphodiesterase activity | 7.79E-03 |
| 43 | GO:0004222: metalloendopeptidase activity | 8.59E-03 |
| 44 | GO:0004673: protein histidine kinase activity | 9.76E-03 |
| 45 | GO:0003746: translation elongation factor activity | 9.89E-03 |
| 46 | GO:0003697: single-stranded DNA binding | 9.89E-03 |
| 47 | GO:0008515: sucrose transmembrane transporter activity | 1.08E-02 |
| 48 | GO:0001054: RNA polymerase I activity | 1.08E-02 |
| 49 | GO:0008559: xenobiotic-transporting ATPase activity | 1.08E-02 |
| 50 | GO:0051539: 4 iron, 4 sulfur cluster binding | 1.13E-02 |
| 51 | GO:0004022: alcohol dehydrogenase (NAD) activity | 1.30E-02 |
| 52 | GO:0031072: heat shock protein binding | 1.30E-02 |
| 53 | GO:0000155: phosphorelay sensor kinase activity | 1.30E-02 |
| 54 | GO:0008168: methyltransferase activity | 1.54E-02 |
| 55 | GO:0051119: sugar transmembrane transporter activity | 1.54E-02 |
| 56 | GO:0003690: double-stranded DNA binding | 1.79E-02 |
| 57 | GO:0043424: protein histidine kinase binding | 1.92E-02 |
| 58 | GO:0004176: ATP-dependent peptidase activity | 2.05E-02 |
| 59 | GO:0033612: receptor serine/threonine kinase binding | 2.05E-02 |
| 60 | GO:0030570: pectate lyase activity | 2.33E-02 |
| 61 | GO:0004812: aminoacyl-tRNA ligase activity | 2.62E-02 |
| 62 | GO:0018024: histone-lysine N-methyltransferase activity | 2.62E-02 |
| 63 | GO:0004871: signal transducer activity | 2.81E-02 |
| 64 | GO:0003713: transcription coactivator activity | 2.92E-02 |
| 65 | GO:0005515: protein binding | 3.52E-02 |
| 66 | GO:0000156: phosphorelay response regulator activity | 3.72E-02 |
| 67 | GO:0016759: cellulose synthase activity | 3.88E-02 |
| 68 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 3.96E-02 |
| 69 | GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity | 4.05E-02 |
| 70 | GO:0008237: metallopeptidase activity | 4.05E-02 |
| 71 | GO:0003729: mRNA binding | 4.21E-02 |
| 72 | GO:0008375: acetylglucosaminyltransferase activity | 4.76E-02 |
| 73 | GO:0004004: ATP-dependent RNA helicase activity | 4.94E-02 |