Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G42190

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010412: mannan metabolic process0.00E+00
2GO:0071311: cellular response to acetate0.00E+00
3GO:0070979: protein K11-linked ubiquitination0.00E+00
4GO:0042966: biotin carboxyl carrier protein biosynthetic process0.00E+00
5GO:0071260: cellular response to mechanical stimulus0.00E+00
6GO:0061157: mRNA destabilization0.00E+00
7GO:0090706: specification of plant organ position0.00E+00
8GO:0009583: detection of light stimulus0.00E+00
9GO:0045176: apical protein localization0.00E+00
10GO:2000121: regulation of removal of superoxide radicals0.00E+00
11GO:0007037: vacuolar phosphate transport0.00E+00
12GO:0071000: response to magnetism0.00E+00
13GO:0010068: protoderm histogenesis0.00E+00
14GO:0031129: inductive cell-cell signaling0.00E+00
15GO:2001294: malonyl-CoA catabolic process0.00E+00
16GO:0006166: purine ribonucleoside salvage3.91E-05
17GO:0006168: adenine salvage3.91E-05
18GO:1902183: regulation of shoot apical meristem development1.10E-04
19GO:0044209: AMP salvage1.10E-04
20GO:0010158: abaxial cell fate specification1.10E-04
21GO:0046283: anthocyanin-containing compound metabolic process1.10E-04
22GO:0006264: mitochondrial DNA replication3.32E-04
23GO:0033259: plastid DNA replication3.32E-04
24GO:0051247: positive regulation of protein metabolic process3.32E-04
25GO:2000905: negative regulation of starch metabolic process3.32E-04
26GO:0006177: GMP biosynthetic process3.32E-04
27GO:0010450: inflorescence meristem growth3.32E-04
28GO:0051171: regulation of nitrogen compound metabolic process3.32E-04
29GO:0010482: regulation of epidermal cell division3.32E-04
30GO:1902265: abscisic acid homeostasis3.32E-04
31GO:0072387: flavin adenine dinucleotide metabolic process3.32E-04
32GO:0007155: cell adhesion3.52E-04
33GO:0010182: sugar mediated signaling pathway3.57E-04
34GO:2000024: regulation of leaf development5.18E-04
35GO:0009638: phototropism6.12E-04
36GO:0031648: protein destabilization7.24E-04
37GO:0010343: singlet oxygen-mediated programmed cell death7.24E-04
38GO:1901529: positive regulation of anion channel activity7.24E-04
39GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole7.24E-04
40GO:0010115: regulation of abscisic acid biosynthetic process7.24E-04
41GO:2000039: regulation of trichome morphogenesis7.24E-04
42GO:1900871: chloroplast mRNA modification7.24E-04
43GO:0010617: circadian regulation of calcium ion oscillation7.24E-04
44GO:0007154: cell communication7.24E-04
45GO:0099402: plant organ development7.24E-04
46GO:1900033: negative regulation of trichome patterning7.24E-04
47GO:0042814: monopolar cell growth7.24E-04
48GO:0009740: gibberellic acid mediated signaling pathway7.30E-04
49GO:0010029: regulation of seed germination8.09E-04
50GO:0045165: cell fate commitment1.17E-03
51GO:0031022: nuclear migration along microfilament1.17E-03
52GO:0051127: positive regulation of actin nucleation1.17E-03
53GO:1902448: positive regulation of shade avoidance1.17E-03
54GO:0048586: regulation of long-day photoperiodism, flowering1.17E-03
55GO:0009405: pathogenesis1.17E-03
56GO:0045604: regulation of epidermal cell differentiation1.17E-03
57GO:0071230: cellular response to amino acid stimulus1.17E-03
58GO:0031145: anaphase-promoting complex-dependent catabolic process1.17E-03
59GO:1901672: positive regulation of systemic acquired resistance1.17E-03
60GO:0006753: nucleoside phosphate metabolic process1.17E-03
61GO:0042753: positive regulation of circadian rhythm1.49E-03
62GO:0009738: abscisic acid-activated signaling pathway1.62E-03
63GO:0009944: polarity specification of adaxial/abaxial axis1.65E-03
64GO:0010187: negative regulation of seed germination1.65E-03
65GO:0009067: aspartate family amino acid biosynthetic process1.68E-03
66GO:0030071: regulation of mitotic metaphase/anaphase transition1.68E-03
67GO:0034059: response to anoxia1.68E-03
68GO:0009647: skotomorphogenesis1.68E-03
69GO:0048645: animal organ formation1.68E-03
70GO:0006164: purine nucleotide biosynthetic process1.68E-03
71GO:0009963: positive regulation of flavonoid biosynthetic process1.68E-03
72GO:0010255: glucose mediated signaling pathway1.68E-03
73GO:0048530: fruit morphogenesis1.68E-03
74GO:1901332: negative regulation of lateral root development1.68E-03
75GO:0009416: response to light stimulus1.73E-03
76GO:0007623: circadian rhythm1.83E-03
77GO:0048629: trichome patterning2.26E-03
78GO:0051322: anaphase2.26E-03
79GO:2000306: positive regulation of photomorphogenesis2.26E-03
80GO:0046355: mannan catabolic process2.26E-03
81GO:0009649: entrainment of circadian clock2.26E-03
82GO:1902347: response to strigolactone2.26E-03
83GO:0009902: chloroplast relocation2.26E-03
84GO:0009585: red, far-red light phototransduction2.85E-03
85GO:0032876: negative regulation of DNA endoreduplication2.89E-03
86GO:0034052: positive regulation of plant-type hypersensitive response2.89E-03
87GO:0006544: glycine metabolic process2.89E-03
88GO:0010117: photoprotection2.89E-03
89GO:0045038: protein import into chloroplast thylakoid membrane2.89E-03
90GO:0010087: phloem or xylem histogenesis3.03E-03
91GO:0010154: fruit development3.26E-03
92GO:0048827: phyllome development3.57E-03
93GO:0009959: negative gravitropism3.57E-03
94GO:0060918: auxin transport3.57E-03
95GO:1902456: regulation of stomatal opening3.57E-03
96GO:1901371: regulation of leaf morphogenesis3.57E-03
97GO:0000741: karyogamy3.57E-03
98GO:0009117: nucleotide metabolic process3.57E-03
99GO:0006561: proline biosynthetic process3.57E-03
100GO:0006563: L-serine metabolic process3.57E-03
101GO:0048367: shoot system development3.67E-03
102GO:0048825: cotyledon development3.76E-03
103GO:0009088: threonine biosynthetic process4.30E-03
104GO:0048444: floral organ morphogenesis4.30E-03
105GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity4.30E-03
106GO:0009648: photoperiodism4.30E-03
107GO:0010310: regulation of hydrogen peroxide metabolic process4.30E-03
108GO:0042372: phylloquinone biosynthetic process4.30E-03
109GO:0010244: response to low fluence blue light stimulus by blue low-fluence system4.30E-03
110GO:2000033: regulation of seed dormancy process4.30E-03
111GO:0048280: vesicle fusion with Golgi apparatus4.30E-03
112GO:0009903: chloroplast avoidance movement4.30E-03
113GO:0010189: vitamin E biosynthetic process4.30E-03
114GO:0010583: response to cyclopentenone4.31E-03
115GO:0006464: cellular protein modification process4.88E-03
116GO:0010161: red light signaling pathway5.07E-03
117GO:0015937: coenzyme A biosynthetic process5.07E-03
118GO:0051510: regulation of unidimensional cell growth5.07E-03
119GO:0009787: regulation of abscisic acid-activated signaling pathway5.89E-03
120GO:0043068: positive regulation of programmed cell death5.89E-03
121GO:0009690: cytokinin metabolic process5.89E-03
122GO:0010078: maintenance of root meristem identity5.89E-03
123GO:0032875: regulation of DNA endoreduplication5.89E-03
124GO:0043562: cellular response to nitrogen levels6.76E-03
125GO:0010093: specification of floral organ identity6.76E-03
126GO:0010099: regulation of photomorphogenesis6.76E-03
127GO:0010100: negative regulation of photomorphogenesis6.76E-03
128GO:0006997: nucleus organization6.76E-03
129GO:0048573: photoperiodism, flowering6.87E-03
130GO:0051865: protein autoubiquitination7.67E-03
131GO:0006783: heme biosynthetic process7.67E-03
132GO:0006189: 'de novo' IMP biosynthetic process7.67E-03
133GO:0071577: zinc II ion transmembrane transport8.61E-03
134GO:1900426: positive regulation of defense response to bacterium8.61E-03
135GO:0000387: spliceosomal snRNP assembly8.61E-03
136GO:0010018: far-red light signaling pathway8.61E-03
137GO:1900865: chloroplast RNA modification8.61E-03
138GO:0048354: mucilage biosynthetic process involved in seed coat development8.61E-03
139GO:0010380: regulation of chlorophyll biosynthetic process8.61E-03
140GO:0009641: shade avoidance9.61E-03
141GO:0010192: mucilage biosynthetic process9.61E-03
142GO:0010162: seed dormancy process9.61E-03
143GO:0009299: mRNA transcription9.61E-03
144GO:0006896: Golgi to vacuole transport9.61E-03
145GO:0006535: cysteine biosynthetic process from serine9.61E-03
146GO:0009688: abscisic acid biosynthetic process9.61E-03
147GO:0009637: response to blue light9.66E-03
148GO:0009684: indoleacetic acid biosynthetic process1.06E-02
149GO:0006816: calcium ion transport1.06E-02
150GO:0009773: photosynthetic electron transport in photosystem I1.06E-02
151GO:0009089: lysine biosynthetic process via diaminopimelate1.06E-02
152GO:0009750: response to fructose1.06E-02
153GO:0010468: regulation of gene expression1.12E-02
154GO:0009640: photomorphogenesis1.25E-02
155GO:0010229: inflorescence development1.28E-02
156GO:0030036: actin cytoskeleton organization1.28E-02
157GO:0010075: regulation of meristem growth1.28E-02
158GO:0009725: response to hormone1.28E-02
159GO:0010588: cotyledon vascular tissue pattern formation1.28E-02
160GO:0030048: actin filament-based movement1.28E-02
161GO:0009785: blue light signaling pathway1.28E-02
162GO:0010628: positive regulation of gene expression1.28E-02
163GO:0009644: response to high light intensity1.35E-02
164GO:0010540: basipetal auxin transport1.40E-02
165GO:0006302: double-strand break repair1.40E-02
166GO:0048467: gynoecium development1.40E-02
167GO:0006541: glutamine metabolic process1.40E-02
168GO:0009933: meristem structural organization1.40E-02
169GO:0009825: multidimensional cell growth1.51E-02
170GO:0010030: positive regulation of seed germination1.51E-02
171GO:0009833: plant-type primary cell wall biogenesis1.63E-02
172GO:0000162: tryptophan biosynthetic process1.63E-02
173GO:2000377: regulation of reactive oxygen species metabolic process1.76E-02
174GO:0005992: trehalose biosynthetic process1.76E-02
175GO:0019344: cysteine biosynthetic process1.76E-02
176GO:0000027: ribosomal large subunit assembly1.76E-02
177GO:0007010: cytoskeleton organization1.76E-02
178GO:0006874: cellular calcium ion homeostasis1.89E-02
179GO:0048511: rhythmic process2.02E-02
180GO:0051321: meiotic cell cycle2.02E-02
181GO:0009814: defense response, incompatible interaction2.15E-02
182GO:2000022: regulation of jasmonic acid mediated signaling pathway2.15E-02
183GO:0035428: hexose transmembrane transport2.15E-02
184GO:0009686: gibberellin biosynthetic process2.29E-02
185GO:0010214: seed coat development2.43E-02
186GO:0010091: trichome branching2.43E-02
187GO:0019722: calcium-mediated signaling2.43E-02
188GO:0009742: brassinosteroid mediated signaling pathway2.55E-02
189GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.57E-02
190GO:0070417: cellular response to cold2.57E-02
191GO:0042147: retrograde transport, endosome to Golgi2.57E-02
192GO:0010118: stomatal movement2.72E-02
193GO:0042631: cellular response to water deprivation2.72E-02
194GO:0000226: microtubule cytoskeleton organization2.72E-02
195GO:0042335: cuticle development2.72E-02
196GO:0000271: polysaccharide biosynthetic process2.72E-02
197GO:0080022: primary root development2.72E-02
198GO:0034220: ion transmembrane transport2.72E-02
199GO:0046323: glucose import2.87E-02
200GO:0008360: regulation of cell shape2.87E-02
201GO:0009958: positive gravitropism2.87E-02
202GO:0045489: pectin biosynthetic process2.87E-02
203GO:0010197: polar nucleus fusion2.87E-02
204GO:0007018: microtubule-based movement3.02E-02
205GO:0042752: regulation of circadian rhythm3.02E-02
206GO:0009646: response to absence of light3.02E-02
207GO:0009851: auxin biosynthetic process3.18E-02
208GO:0006623: protein targeting to vacuole3.18E-02
209GO:0008654: phospholipid biosynthetic process3.18E-02
210GO:0048510: regulation of timing of transition from vegetative to reproductive phase3.33E-02
211GO:0071554: cell wall organization or biogenesis3.33E-02
212GO:0006891: intra-Golgi vesicle-mediated transport3.33E-02
213GO:0007264: small GTPase mediated signal transduction3.49E-02
214GO:0009639: response to red or far red light3.82E-02
215GO:0040008: regulation of growth3.96E-02
216GO:0000910: cytokinesis4.16E-02
217GO:0009911: positive regulation of flower development4.33E-02
218GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.51E-02
219GO:0015995: chlorophyll biosynthetic process4.86E-02
220GO:0006888: ER to Golgi vesicle-mediated transport4.86E-02
RankGO TermAdjusted P value
1GO:1990534: thermospermine oxidase activity0.00E+00
2GO:0004077: biotin-[acetyl-CoA-carboxylase] ligase activity0.00E+00
3GO:0004078: biotin-[methylcrotonoyl-CoA-carboxylase] ligase activity0.00E+00
4GO:0010301: xanthoxin dehydrogenase activity0.00E+00
5GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity0.00E+00
6GO:0010276: phytol kinase activity0.00E+00
7GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
8GO:0015276: ligand-gated ion channel activity0.00E+00
9GO:0003999: adenine phosphoribosyltransferase activity3.91E-05
10GO:0050139: nicotinate-N-glucosyltransferase activity3.32E-04
11GO:0010945: CoA pyrophosphatase activity3.32E-04
12GO:0008066: glutamate receptor activity3.32E-04
13GO:0010313: phytochrome binding3.32E-04
14GO:0042802: identical protein binding5.52E-04
15GO:0043425: bHLH transcription factor binding7.24E-04
16GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity7.24E-04
17GO:0003938: IMP dehydrogenase activity7.24E-04
18GO:0080097: L-tryptophan:pyruvate aminotransferase activity7.24E-04
19GO:0050017: L-3-cyanoalanine synthase activity7.24E-04
20GO:0017118: lipoyltransferase activity7.24E-04
21GO:0004049: anthranilate synthase activity1.17E-03
22GO:0090729: toxin activity1.17E-03
23GO:0004072: aspartate kinase activity1.68E-03
24GO:0035529: NADH pyrophosphatase activity1.68E-03
25GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity1.68E-03
26GO:0017172: cysteine dioxygenase activity1.68E-03
27GO:0009882: blue light photoreceptor activity1.68E-03
28GO:0008017: microtubule binding1.96E-03
29GO:0008409: 5'-3' exonuclease activity2.26E-03
30GO:0016985: mannan endo-1,4-beta-mannosidase activity2.26E-03
31GO:0080032: methyl jasmonate esterase activity2.26E-03
32GO:0016846: carbon-sulfur lyase activity2.89E-03
33GO:0004372: glycine hydroxymethyltransferase activity2.89E-03
34GO:0001085: RNA polymerase II transcription factor binding3.26E-03
35GO:0004605: phosphatidate cytidylyltransferase activity3.57E-03
36GO:0004709: MAP kinase kinase kinase activity3.57E-03
37GO:0000210: NAD+ diphosphatase activity3.57E-03
38GO:0016208: AMP binding3.57E-03
39GO:0016462: pyrophosphatase activity3.57E-03
40GO:0004124: cysteine synthase activity4.30E-03
41GO:0030247: polysaccharide binding6.87E-03
42GO:0004871: signal transducer activity6.98E-03
43GO:0071949: FAD binding7.67E-03
44GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding8.81E-03
45GO:0004864: protein phosphatase inhibitor activity9.61E-03
46GO:0004805: trehalose-phosphatase activity9.61E-03
47GO:0047372: acylglycerol lipase activity1.06E-02
48GO:0008794: arsenate reductase (glutaredoxin) activity1.06E-02
49GO:0005262: calcium channel activity1.28E-02
50GO:0004022: alcohol dehydrogenase (NAD) activity1.28E-02
51GO:0008131: primary amine oxidase activity1.40E-02
52GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.40E-02
53GO:0004672: protein kinase activity1.47E-02
54GO:0005217: intracellular ligand-gated ion channel activity1.51E-02
55GO:0004970: ionotropic glutamate receptor activity1.51E-02
56GO:0003887: DNA-directed DNA polymerase activity1.63E-02
57GO:0005385: zinc ion transmembrane transporter activity1.76E-02
58GO:0046872: metal ion binding1.76E-02
59GO:0005528: FK506 binding1.76E-02
60GO:0003777: microtubule motor activity1.87E-02
61GO:0008324: cation transmembrane transporter activity1.89E-02
62GO:0005515: protein binding1.99E-02
63GO:0019706: protein-cysteine S-palmitoyltransferase activity2.02E-02
64GO:0008408: 3'-5' exonuclease activity2.02E-02
65GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.15E-02
66GO:0016760: cellulose synthase (UDP-forming) activity2.29E-02
67GO:0030570: pectate lyase activity2.29E-02
68GO:0003700: transcription factor activity, sequence-specific DNA binding2.40E-02
69GO:0003727: single-stranded RNA binding2.43E-02
70GO:0003824: catalytic activity2.45E-02
71GO:0042803: protein homodimerization activity2.73E-02
72GO:0005355: glucose transmembrane transporter activity3.02E-02
73GO:0010181: FMN binding3.02E-02
74GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen3.09E-02
75GO:0019901: protein kinase binding3.18E-02
76GO:0004872: receptor activity3.18E-02
77GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding3.43E-02
78GO:0000156: phosphorelay response regulator activity3.66E-02
79GO:0016759: cellulose synthase activity3.82E-02
80GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.87E-02
81GO:0016722: oxidoreductase activity, oxidizing metal ions3.99E-02
82GO:0016413: O-acetyltransferase activity4.16E-02
83GO:0016597: amino acid binding4.16E-02
84GO:0004721: phosphoprotein phosphatase activity4.86E-02
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Gene type



Gene DE type