Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G41950

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
2GO:0045014: negative regulation of transcription by glucose0.00E+00
3GO:0090627: plant epidermal cell differentiation0.00E+00
4GO:0009606: tropism0.00E+00
5GO:0090322: regulation of superoxide metabolic process0.00E+00
6GO:0000491: small nucleolar ribonucleoprotein complex assembly0.00E+00
7GO:1903224: regulation of endodermal cell differentiation0.00E+00
8GO:0080127: fruit septum development0.00E+00
9GO:0035884: arabinan biosynthetic process0.00E+00
10GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
11GO:0097164: ammonium ion metabolic process0.00E+00
12GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
13GO:0045184: establishment of protein localization0.00E+00
14GO:0090615: mitochondrial mRNA processing0.00E+00
15GO:0000492: box C/D snoRNP assembly0.00E+00
16GO:0031222: arabinan catabolic process0.00E+00
17GO:0009451: RNA modification6.18E-07
18GO:0046620: regulation of organ growth2.15E-06
19GO:0009734: auxin-activated signaling pathway7.25E-06
20GO:0010569: regulation of double-strand break repair via homologous recombination2.57E-05
21GO:0009733: response to auxin5.40E-05
22GO:0006518: peptide metabolic process8.23E-05
23GO:0009657: plastid organization1.11E-04
24GO:0016556: mRNA modification1.69E-04
25GO:1900865: chloroplast RNA modification1.89E-04
26GO:0051322: anaphase2.84E-04
27GO:2000038: regulation of stomatal complex development2.84E-04
28GO:0080188: RNA-directed DNA methylation5.74E-04
29GO:0009913: epidermal cell differentiation5.88E-04
30GO:0042793: transcription from plastid promoter5.88E-04
31GO:1901259: chloroplast rRNA processing7.77E-04
32GO:0034757: negative regulation of iron ion transport7.81E-04
33GO:0042659: regulation of cell fate specification7.81E-04
34GO:1905039: carboxylic acid transmembrane transport7.81E-04
35GO:1905200: gibberellic acid transmembrane transport7.81E-04
36GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process7.81E-04
37GO:0070509: calcium ion import7.81E-04
38GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic7.81E-04
39GO:0080112: seed growth7.81E-04
40GO:0090558: plant epidermis development7.81E-04
41GO:0010063: positive regulation of trichoblast fate specification7.81E-04
42GO:0010480: microsporocyte differentiation7.81E-04
43GO:1903866: palisade mesophyll development7.81E-04
44GO:0035987: endodermal cell differentiation7.81E-04
45GO:0006436: tryptophanyl-tRNA aminoacylation7.81E-04
46GO:0040008: regulation of growth8.44E-04
47GO:0016998: cell wall macromolecule catabolic process9.67E-04
48GO:0006955: immune response9.91E-04
49GO:0048528: post-embryonic root development9.91E-04
50GO:0048437: floral organ development9.91E-04
51GO:0009416: response to light stimulus1.01E-03
52GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.07E-03
53GO:0007389: pattern specification process1.50E-03
54GO:2000123: positive regulation of stomatal complex development1.69E-03
55GO:0070981: L-asparagine biosynthetic process1.69E-03
56GO:0048255: mRNA stabilization1.69E-03
57GO:1902326: positive regulation of chlorophyll biosynthetic process1.69E-03
58GO:0010271: regulation of chlorophyll catabolic process1.69E-03
59GO:0010541: acropetal auxin transport1.69E-03
60GO:0018026: peptidyl-lysine monomethylation1.69E-03
61GO:0009662: etioplast organization1.69E-03
62GO:1900033: negative regulation of trichome patterning1.69E-03
63GO:1904143: positive regulation of carotenoid biosynthetic process1.69E-03
64GO:0080009: mRNA methylation1.69E-03
65GO:0006529: asparagine biosynthetic process1.69E-03
66GO:0009875: pollen-pistil interaction1.69E-03
67GO:0000902: cell morphogenesis1.81E-03
68GO:0010305: leaf vascular tissue pattern formation1.82E-03
69GO:0009926: auxin polar transport2.11E-03
70GO:0031425: chloroplast RNA processing2.14E-03
71GO:0009658: chloroplast organization2.21E-03
72GO:0006535: cysteine biosynthetic process from serine2.50E-03
73GO:0048829: root cap development2.50E-03
74GO:0045910: negative regulation of DNA recombination2.80E-03
75GO:0090708: specification of plant organ axis polarity2.80E-03
76GO:0080117: secondary growth2.80E-03
77GO:0090391: granum assembly2.80E-03
78GO:0042780: tRNA 3'-end processing2.80E-03
79GO:0001578: microtubule bundle formation2.80E-03
80GO:0009432: SOS response2.80E-03
81GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic2.80E-03
82GO:0010252: auxin homeostasis3.07E-03
83GO:0045037: protein import into chloroplast stroma3.33E-03
84GO:0010582: floral meristem determinacy3.33E-03
85GO:0010588: cotyledon vascular tissue pattern formation3.79E-03
86GO:0009102: biotin biosynthetic process4.07E-03
87GO:0010239: chloroplast mRNA processing4.07E-03
88GO:0010306: rhamnogalacturonan II biosynthetic process4.07E-03
89GO:0019048: modulation by virus of host morphology or physiology4.07E-03
90GO:0046739: transport of virus in multicellular host4.07E-03
91GO:0051289: protein homotetramerization4.07E-03
92GO:0031048: chromatin silencing by small RNA4.07E-03
93GO:0000730: DNA recombinase assembly4.07E-03
94GO:0010371: regulation of gibberellin biosynthetic process4.07E-03
95GO:1902476: chloride transmembrane transport4.07E-03
96GO:0010071: root meristem specification4.07E-03
97GO:0051513: regulation of monopolar cell growth4.07E-03
98GO:0048481: plant ovule development5.43E-03
99GO:0042274: ribosomal small subunit biogenesis5.50E-03
100GO:0030104: water homeostasis5.50E-03
101GO:0009553: embryo sac development5.50E-03
102GO:0006221: pyrimidine nucleotide biosynthetic process5.50E-03
103GO:0006021: inositol biosynthetic process5.50E-03
104GO:0051567: histone H3-K9 methylation5.50E-03
105GO:0006479: protein methylation5.50E-03
106GO:0048629: trichome patterning5.50E-03
107GO:1900864: mitochondrial RNA modification5.50E-03
108GO:0019344: cysteine biosynthetic process5.97E-03
109GO:0006418: tRNA aminoacylation for protein translation6.60E-03
110GO:0010158: abaxial cell fate specification7.08E-03
111GO:0080110: sporopollenin biosynthetic process7.08E-03
112GO:0032876: negative regulation of DNA endoreduplication7.08E-03
113GO:0030308: negative regulation of cell growth7.08E-03
114GO:0010375: stomatal complex patterning7.08E-03
115GO:0048497: maintenance of floral organ identity7.08E-03
116GO:0009107: lipoate biosynthetic process7.08E-03
117GO:0016123: xanthophyll biosynthetic process7.08E-03
118GO:0003333: amino acid transmembrane transport7.27E-03
119GO:0009959: negative gravitropism8.81E-03
120GO:0006655: phosphatidylglycerol biosynthetic process8.81E-03
121GO:1902456: regulation of stomatal opening8.81E-03
122GO:0048831: regulation of shoot system development8.81E-03
123GO:0016554: cytidine to uridine editing8.81E-03
124GO:0003006: developmental process involved in reproduction8.81E-03
125GO:0010315: auxin efflux8.81E-03
126GO:0016458: gene silencing8.81E-03
127GO:0009643: photosynthetic acclimation8.81E-03
128GO:0006014: D-ribose metabolic process8.81E-03
129GO:0018258: protein O-linked glycosylation via hydroxyproline8.81E-03
130GO:0010405: arabinogalactan protein metabolic process8.81E-03
131GO:0010304: PSII associated light-harvesting complex II catabolic process8.81E-03
132GO:0042549: photosystem II stabilization8.81E-03
133GO:0042127: regulation of cell proliferation9.48E-03
134GO:0009790: embryo development1.03E-02
135GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity1.07E-02
136GO:0010310: regulation of hydrogen peroxide metabolic process1.07E-02
137GO:2000067: regulation of root morphogenesis1.07E-02
138GO:0009955: adaxial/abaxial pattern specification1.07E-02
139GO:0009082: branched-chain amino acid biosynthetic process1.07E-02
140GO:0006458: 'de novo' protein folding1.07E-02
141GO:0042026: protein refolding1.07E-02
142GO:0009942: longitudinal axis specification1.07E-02
143GO:0048509: regulation of meristem development1.07E-02
144GO:0009099: valine biosynthetic process1.07E-02
145GO:0030488: tRNA methylation1.07E-02
146GO:2000037: regulation of stomatal complex patterning1.07E-02
147GO:0009793: embryo development ending in seed dormancy1.08E-02
148GO:0000226: microtubule cytoskeleton organization1.11E-02
149GO:0010087: phloem or xylem histogenesis1.11E-02
150GO:0016567: protein ubiquitination1.12E-02
151GO:0006508: proteolysis1.15E-02
152GO:0048868: pollen tube development1.20E-02
153GO:0009741: response to brassinosteroid1.20E-02
154GO:0042148: strand invasion1.27E-02
155GO:0006821: chloride transport1.27E-02
156GO:0015937: coenzyme A biosynthetic process1.27E-02
157GO:0010050: vegetative phase change1.27E-02
158GO:0010103: stomatal complex morphogenesis1.27E-02
159GO:0009646: response to absence of light1.29E-02
160GO:0048544: recognition of pollen1.29E-02
161GO:0048825: cotyledon development1.39E-02
162GO:0001522: pseudouridine synthesis1.48E-02
163GO:0009850: auxin metabolic process1.48E-02
164GO:0009642: response to light intensity1.48E-02
165GO:0042255: ribosome assembly1.48E-02
166GO:0006353: DNA-templated transcription, termination1.48E-02
167GO:0048766: root hair initiation1.48E-02
168GO:0055075: potassium ion homeostasis1.48E-02
169GO:0000105: histidine biosynthetic process1.48E-02
170GO:0052543: callose deposition in cell wall1.48E-02
171GO:0080156: mitochondrial mRNA modification1.49E-02
172GO:0009736: cytokinin-activated signaling pathway1.50E-02
173GO:0010583: response to cyclopentenone1.59E-02
174GO:0019430: removal of superoxide radicals1.70E-02
175GO:0010212: response to ionizing radiation1.70E-02
176GO:0009097: isoleucine biosynthetic process1.70E-02
177GO:0010497: plasmodesmata-mediated intercellular transport1.70E-02
178GO:0032544: plastid translation1.70E-02
179GO:0009828: plant-type cell wall loosening1.81E-02
180GO:0048507: meristem development1.93E-02
181GO:0000373: Group II intron splicing1.93E-02
182GO:0048589: developmental growth1.93E-02
183GO:0048367: shoot system development1.93E-02
184GO:0000910: cytokinesis2.04E-02
185GO:0010027: thylakoid membrane organization2.17E-02
186GO:0009638: phototropism2.18E-02
187GO:0042761: very long-chain fatty acid biosynthetic process2.18E-02
188GO:2000280: regulation of root development2.18E-02
189GO:0006349: regulation of gene expression by genetic imprinting2.18E-02
190GO:0009555: pollen development2.23E-02
191GO:0006259: DNA metabolic process2.43E-02
192GO:0010048: vernalization response2.43E-02
193GO:0030422: production of siRNA involved in RNA interference2.43E-02
194GO:0045036: protein targeting to chloroplast2.43E-02
195GO:0006298: mismatch repair2.43E-02
196GO:0006949: syncytium formation2.43E-02
197GO:0046856: phosphatidylinositol dephosphorylation2.70E-02
198GO:0010015: root morphogenesis2.70E-02
199GO:0006265: DNA topological change2.70E-02
200GO:1903507: negative regulation of nucleic acid-templated transcription2.70E-02
201GO:0009750: response to fructose2.70E-02
202GO:0015770: sucrose transport2.70E-02
203GO:0048229: gametophyte development2.70E-02
204GO:0000160: phosphorelay signal transduction system2.97E-02
205GO:0008361: regulation of cell size2.97E-02
206GO:0006790: sulfur compound metabolic process2.97E-02
207GO:0006312: mitotic recombination2.97E-02
208GO:0012501: programmed cell death2.97E-02
209GO:0010152: pollen maturation2.97E-02
210GO:0016024: CDP-diacylglycerol biosynthetic process2.97E-02
211GO:0010102: lateral root morphogenesis3.25E-02
212GO:0009785: blue light signaling pathway3.25E-02
213GO:0009691: cytokinin biosynthetic process3.25E-02
214GO:0010075: regulation of meristem growth3.25E-02
215GO:0009058: biosynthetic process3.32E-02
216GO:0006865: amino acid transport3.43E-02
217GO:0048467: gynoecium development3.55E-02
218GO:0010207: photosystem II assembly3.55E-02
219GO:0006541: glutamine metabolic process3.55E-02
220GO:0010020: chloroplast fission3.55E-02
221GO:0010540: basipetal auxin transport3.55E-02
222GO:0009934: regulation of meristem structural organization3.55E-02
223GO:0071555: cell wall organization3.59E-02
224GO:0009901: anther dehiscence3.85E-02
225GO:0070588: calcium ion transmembrane transport3.85E-02
226GO:0046854: phosphatidylinositol phosphorylation3.85E-02
227GO:0005975: carbohydrate metabolic process3.86E-02
228GO:0006833: water transport4.16E-02
229GO:0080147: root hair cell development4.47E-02
230GO:2000377: regulation of reactive oxygen species metabolic process4.47E-02
231GO:0008283: cell proliferation4.61E-02
232GO:0051302: regulation of cell division4.80E-02
233GO:0019953: sexual reproduction4.80E-02
234GO:0010073: meristem maintenance4.80E-02
RankGO TermAdjusted P value
1GO:0071633: dihydroceramidase activity0.00E+00
2GO:0042834: peptidoglycan binding0.00E+00
3GO:0008710: 8-amino-7-oxononanoate synthase activity0.00E+00
4GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
5GO:0004401: histidinol-phosphatase activity0.00E+00
6GO:0070009: serine-type aminopeptidase activity0.00E+00
7GO:0052834: inositol monophosphate phosphatase activity0.00E+00
8GO:0004519: endonuclease activity3.90E-10
9GO:0003723: RNA binding1.70E-06
10GO:0001872: (1->3)-beta-D-glucan binding1.69E-04
11GO:0004222: metalloendopeptidase activity1.95E-04
12GO:0004124: cysteine synthase activity7.77E-04
13GO:1905201: gibberellin transmembrane transporter activity7.81E-04
14GO:0004632: phosphopantothenate--cysteine ligase activity7.81E-04
15GO:0016274: protein-arginine N-methyltransferase activity7.81E-04
16GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity7.81E-04
17GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity7.81E-04
18GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity7.81E-04
19GO:0004071: aspartate-ammonia ligase activity7.81E-04
20GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity7.81E-04
21GO:0004830: tryptophan-tRNA ligase activity7.81E-04
22GO:0052381: tRNA dimethylallyltransferase activity7.81E-04
23GO:0004160: dihydroxy-acid dehydratase activity7.81E-04
24GO:0010347: L-galactose-1-phosphate phosphatase activity7.81E-04
25GO:0004016: adenylate cyclase activity7.81E-04
26GO:0008173: RNA methyltransferase activity1.50E-03
27GO:0016415: octanoyltransferase activity1.69E-03
28GO:0004047: aminomethyltransferase activity1.69E-03
29GO:0052832: inositol monophosphate 3-phosphatase activity1.69E-03
30GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.69E-03
31GO:0008805: carbon-monoxide oxygenase activity1.69E-03
32GO:0008934: inositol monophosphate 1-phosphatase activity1.69E-03
33GO:0052833: inositol monophosphate 4-phosphatase activity1.69E-03
34GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.69E-03
35GO:0009884: cytokinin receptor activity1.69E-03
36GO:0017118: lipoyltransferase activity1.69E-03
37GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity1.69E-03
38GO:0016868: intramolecular transferase activity, phosphotransferases1.69E-03
39GO:0019843: rRNA binding2.01E-03
40GO:0009672: auxin:proton symporter activity2.14E-03
41GO:0017150: tRNA dihydrouridine synthase activity2.80E-03
42GO:0042781: 3'-tRNA processing endoribonuclease activity2.80E-03
43GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity2.80E-03
44GO:0016805: dipeptidase activity2.80E-03
45GO:0005034: osmosensor activity2.80E-03
46GO:0008237: metallopeptidase activity3.32E-03
47GO:0003725: double-stranded RNA binding3.79E-03
48GO:0010329: auxin efflux transmembrane transporter activity3.79E-03
49GO:0009678: hydrogen-translocating pyrophosphatase activity4.07E-03
50GO:0009041: uridylate kinase activity4.07E-03
51GO:0035197: siRNA binding4.07E-03
52GO:0008508: bile acid:sodium symporter activity4.07E-03
53GO:0042973: glucan endo-1,3-beta-D-glucosidase activity4.29E-03
54GO:0004650: polygalacturonase activity5.01E-03
55GO:0010011: auxin binding5.50E-03
56GO:0016836: hydro-lyase activity5.50E-03
57GO:0010328: auxin influx transmembrane transporter activity5.50E-03
58GO:0005253: anion channel activity5.50E-03
59GO:0046556: alpha-L-arabinofuranosidase activity5.50E-03
60GO:0004930: G-protein coupled receptor activity5.50E-03
61GO:0016279: protein-lysine N-methyltransferase activity5.50E-03
62GO:0008725: DNA-3-methyladenine glycosylase activity7.08E-03
63GO:0004888: transmembrane signaling receptor activity7.08E-03
64GO:0070696: transmembrane receptor protein serine/threonine kinase binding7.08E-03
65GO:0004176: ATP-dependent peptidase activity7.27E-03
66GO:0030570: pectate lyase activity8.71E-03
67GO:0004605: phosphatidate cytidylyltransferase activity8.81E-03
68GO:1990714: hydroxyproline O-galactosyltransferase activity8.81E-03
69GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity8.81E-03
70GO:0004784: superoxide dismutase activity8.81E-03
71GO:0005247: voltage-gated chloride channel activity8.81E-03
72GO:0030983: mismatched DNA binding8.81E-03
73GO:0003727: single-stranded RNA binding9.48E-03
74GO:0004812: aminoacyl-tRNA ligase activity1.03E-02
75GO:0008195: phosphatidate phosphatase activity1.07E-02
76GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity1.07E-02
77GO:0016832: aldehyde-lyase activity1.07E-02
78GO:0004747: ribokinase activity1.07E-02
79GO:0004656: procollagen-proline 4-dioxygenase activity1.07E-02
80GO:0019900: kinase binding1.07E-02
81GO:0004427: inorganic diphosphatase activity1.27E-02
82GO:0000150: recombinase activity1.27E-02
83GO:0030515: snoRNA binding1.27E-02
84GO:0019901: protein kinase binding1.39E-02
85GO:0000400: four-way junction DNA binding1.48E-02
86GO:0008865: fructokinase activity1.48E-02
87GO:0004520: endodeoxyribonuclease activity1.48E-02
88GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.49E-02
89GO:0003690: double-stranded DNA binding1.56E-02
90GO:0004871: signal transducer activity1.66E-02
91GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.70E-02
92GO:0005215: transporter activity1.92E-02
93GO:0008168: methyltransferase activity2.42E-02
94GO:0004673: protein histidine kinase activity2.43E-02
95GO:0030247: polysaccharide binding2.55E-02
96GO:0008515: sucrose transmembrane transporter activity2.70E-02
97GO:0044183: protein binding involved in protein folding2.70E-02
98GO:0004521: endoribonuclease activity2.97E-02
99GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity2.97E-02
100GO:0015238: drug transmembrane transporter activity2.97E-02
101GO:0009982: pseudouridine synthase activity3.25E-02
102GO:0004022: alcohol dehydrogenase (NAD) activity3.25E-02
103GO:0031072: heat shock protein binding3.25E-02
104GO:0000155: phosphorelay sensor kinase activity3.25E-02
105GO:0005262: calcium channel activity3.25E-02
106GO:0016829: lyase activity3.43E-02
107GO:0003697: single-stranded DNA binding3.59E-02
108GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors3.59E-02
109GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding3.65E-02
110GO:0003677: DNA binding3.67E-02
111GO:0051119: sugar transmembrane transporter activity3.85E-02
112GO:0004190: aspartic-type endopeptidase activity3.85E-02
113GO:0051539: 4 iron, 4 sulfur cluster binding4.08E-02
114GO:0003714: transcription corepressor activity4.47E-02
115GO:0031418: L-ascorbic acid binding4.47E-02
116GO:0016887: ATPase activity4.54E-02
117GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting4.55E-02
118GO:0004185: serine-type carboxypeptidase activity4.61E-02
119GO:0043424: protein histidine kinase binding4.80E-02
120GO:0008017: microtubule binding4.89E-02
121GO:0043621: protein self-association4.98E-02
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Gene type



Gene DE type