Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G41370

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1903224: regulation of endodermal cell differentiation0.00E+00
2GO:0043972: histone H3-K23 acetylation0.00E+00
3GO:0097164: ammonium ion metabolic process0.00E+00
4GO:0045184: establishment of protein localization0.00E+00
5GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
6GO:0007172: signal complex assembly0.00E+00
7GO:0010480: microsporocyte differentiation0.00E+00
8GO:0044154: histone H3-K14 acetylation0.00E+00
9GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
10GO:1901698: response to nitrogen compound0.00E+00
11GO:0009606: tropism0.00E+00
12GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway5.12E-09
13GO:0006468: protein phosphorylation2.36E-06
14GO:0048437: floral organ development3.47E-06
15GO:2000038: regulation of stomatal complex development4.46E-05
16GO:0009934: regulation of meristem structural organization4.63E-05
17GO:0009658: chloroplast organization5.90E-05
18GO:0042793: transcription from plastid promoter1.04E-04
19GO:0009416: response to light stimulus1.86E-04
20GO:0006955: immune response1.88E-04
21GO:1903866: palisade mesophyll development2.55E-04
22GO:0010063: positive regulation of trichoblast fate specification2.55E-04
23GO:0034971: histone H3-R17 methylation2.55E-04
24GO:0035987: endodermal cell differentiation2.55E-04
25GO:0043609: regulation of carbon utilization2.55E-04
26GO:0006436: tryptophanyl-tRNA aminoacylation2.55E-04
27GO:0034757: negative regulation of iron ion transport2.55E-04
28GO:0034970: histone H3-R2 methylation2.55E-04
29GO:0042659: regulation of cell fate specification2.55E-04
30GO:0034972: histone H3-R26 methylation2.55E-04
31GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic2.55E-04
32GO:0043971: histone H3-K18 acetylation2.55E-04
33GO:0090558: plant epidermis development2.55E-04
34GO:0007389: pattern specification process2.94E-04
35GO:0070981: L-asparagine biosynthetic process5.64E-04
36GO:0010271: regulation of chlorophyll catabolic process5.64E-04
37GO:0018026: peptidyl-lysine monomethylation5.64E-04
38GO:0009662: etioplast organization5.64E-04
39GO:1904143: positive regulation of carotenoid biosynthetic process5.64E-04
40GO:0080009: mRNA methylation5.64E-04
41GO:0009786: regulation of asymmetric cell division5.64E-04
42GO:0080183: response to photooxidative stress5.64E-04
43GO:0006529: asparagine biosynthetic process5.64E-04
44GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine5.64E-04
45GO:2000123: positive regulation of stomatal complex development5.64E-04
46GO:1902326: positive regulation of chlorophyll biosynthetic process5.64E-04
47GO:0048229: gametophyte development5.68E-04
48GO:0010075: regulation of meristem growth7.37E-04
49GO:1901562: response to paraquat9.15E-04
50GO:0071705: nitrogen compound transport9.15E-04
51GO:0042780: tRNA 3'-end processing9.15E-04
52GO:0001578: microtubule bundle formation9.15E-04
53GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic9.15E-04
54GO:0090708: specification of plant organ axis polarity9.15E-04
55GO:0006000: fructose metabolic process9.15E-04
56GO:0080117: secondary growth9.15E-04
57GO:0090391: granum assembly9.15E-04
58GO:0009451: RNA modification1.06E-03
59GO:0046739: transport of virus in multicellular host1.31E-03
60GO:2000904: regulation of starch metabolic process1.31E-03
61GO:0031048: chromatin silencing by small RNA1.31E-03
62GO:0010371: regulation of gibberellin biosynthetic process1.31E-03
63GO:1902476: chloride transmembrane transport1.31E-03
64GO:0010071: root meristem specification1.31E-03
65GO:0051513: regulation of monopolar cell growth1.31E-03
66GO:0010239: chloroplast mRNA processing1.31E-03
67GO:0044211: CTP salvage1.31E-03
68GO:0019048: modulation by virus of host morphology or physiology1.31E-03
69GO:0009800: cinnamic acid biosynthetic process1.31E-03
70GO:0016998: cell wall macromolecule catabolic process1.37E-03
71GO:0010082: regulation of root meristem growth1.63E-03
72GO:0051567: histone H3-K9 methylation1.75E-03
73GO:0044206: UMP salvage1.75E-03
74GO:0044205: 'de novo' UMP biosynthetic process1.75E-03
75GO:0006479: protein methylation1.75E-03
76GO:0051322: anaphase1.75E-03
77GO:0071249: cellular response to nitrate1.75E-03
78GO:0030104: water homeostasis1.75E-03
79GO:0048653: anther development2.07E-03
80GO:0006544: glycine metabolic process2.23E-03
81GO:0048497: maintenance of floral organ identity2.23E-03
82GO:0048578: positive regulation of long-day photoperiodism, flowering2.23E-03
83GO:0032876: negative regulation of DNA endoreduplication2.23E-03
84GO:0030308: negative regulation of cell growth2.23E-03
85GO:0010375: stomatal complex patterning2.23E-03
86GO:0009958: positive gravitropism2.24E-03
87GO:0009646: response to absence of light2.40E-03
88GO:0006559: L-phenylalanine catabolic process2.75E-03
89GO:0006206: pyrimidine nucleobase metabolic process2.75E-03
90GO:0018258: protein O-linked glycosylation via hydroxyproline2.75E-03
91GO:0016458: gene silencing2.75E-03
92GO:0006563: L-serine metabolic process2.75E-03
93GO:0010405: arabinogalactan protein metabolic process2.75E-03
94GO:0010304: PSII associated light-harvesting complex II catabolic process2.75E-03
95GO:0009913: epidermal cell differentiation2.75E-03
96GO:0006655: phosphatidylglycerol biosynthetic process2.75E-03
97GO:0048831: regulation of shoot system development2.75E-03
98GO:0010315: auxin efflux2.75E-03
99GO:0032502: developmental process2.94E-03
100GO:0048509: regulation of meristem development3.30E-03
101GO:1901259: chloroplast rRNA processing3.30E-03
102GO:0030488: tRNA methylation3.30E-03
103GO:2000037: regulation of stomatal complex patterning3.30E-03
104GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity3.30E-03
105GO:2000067: regulation of root morphogenesis3.30E-03
106GO:0009955: adaxial/abaxial pattern specification3.30E-03
107GO:0010067: procambium histogenesis3.30E-03
108GO:0010252: auxin homeostasis3.33E-03
109GO:0009610: response to symbiotic fungus3.89E-03
110GO:0006821: chloride transport3.89E-03
111GO:0010027: thylakoid membrane organization3.97E-03
112GO:0042255: ribosome assembly4.52E-03
113GO:0048766: root hair initiation4.52E-03
114GO:0055075: potassium ion homeostasis4.52E-03
115GO:0001522: pseudouridine synthesis4.52E-03
116GO:0010411: xyloglucan metabolic process4.68E-03
117GO:0010497: plasmodesmata-mediated intercellular transport5.18E-03
118GO:0006526: arginine biosynthetic process5.18E-03
119GO:0044030: regulation of DNA methylation5.18E-03
120GO:0006002: fructose 6-phosphate metabolic process5.18E-03
121GO:0015996: chlorophyll catabolic process5.18E-03
122GO:0009827: plant-type cell wall modification5.18E-03
123GO:0048481: plant ovule development5.18E-03
124GO:0048364: root development5.30E-03
125GO:0000160: phosphorelay signal transduction system5.44E-03
126GO:0000373: Group II intron splicing5.86E-03
127GO:0000902: cell morphogenesis5.86E-03
128GO:0009638: phototropism6.58E-03
129GO:0035999: tetrahydrofolate interconversion6.58E-03
130GO:2000280: regulation of root development6.58E-03
131GO:0006349: regulation of gene expression by genetic imprinting6.58E-03
132GO:0009688: abscisic acid biosynthetic process7.33E-03
133GO:0030422: production of siRNA involved in RNA interference7.33E-03
134GO:0048829: root cap development7.33E-03
135GO:0010048: vernalization response7.33E-03
136GO:0009089: lysine biosynthetic process via diaminopimelate8.11E-03
137GO:0009734: auxin-activated signaling pathway8.36E-03
138GO:0009926: auxin polar transport8.47E-03
139GO:0042546: cell wall biogenesis8.81E-03
140GO:0016024: CDP-diacylglycerol biosynthetic process8.92E-03
141GO:0008361: regulation of cell size8.92E-03
142GO:0015706: nitrate transport8.92E-03
143GO:0009785: blue light signaling pathway9.75E-03
144GO:0009767: photosynthetic electron transport chain9.75E-03
145GO:0010223: secondary shoot formation1.06E-02
146GO:0006541: glutamine metabolic process1.06E-02
147GO:0016567: protein ubiquitination1.06E-02
148GO:0010020: chloroplast fission1.06E-02
149GO:0009736: cytokinin-activated signaling pathway1.14E-02
150GO:0080188: RNA-directed DNA methylation1.15E-02
151GO:0010167: response to nitrate1.15E-02
152GO:0048366: leaf development1.18E-02
153GO:0006071: glycerol metabolic process1.24E-02
154GO:0006833: water transport1.24E-02
155GO:0080167: response to karrikin1.26E-02
156GO:0009909: regulation of flower development1.27E-02
157GO:0048316: seed development1.40E-02
158GO:0048367: shoot system development1.40E-02
159GO:0006825: copper ion transport1.43E-02
160GO:0051302: regulation of cell division1.43E-02
161GO:0006418: tRNA aminoacylation for protein translation1.43E-02
162GO:0010431: seed maturation1.53E-02
163GO:0006306: DNA methylation1.53E-02
164GO:0009793: embryo development ending in seed dormancy1.67E-02
165GO:0001944: vasculature development1.74E-02
166GO:0071215: cellular response to abscisic acid stimulus1.74E-02
167GO:0042127: regulation of cell proliferation1.85E-02
168GO:0010089: xylem development1.85E-02
169GO:0006284: base-excision repair1.85E-02
170GO:0070417: cellular response to cold1.95E-02
171GO:0010087: phloem or xylem histogenesis2.07E-02
172GO:0042631: cellular response to water deprivation2.07E-02
173GO:0000226: microtubule cytoskeleton organization2.07E-02
174GO:0009058: biosynthetic process2.16E-02
175GO:0010305: leaf vascular tissue pattern formation2.18E-02
176GO:0006342: chromatin silencing2.18E-02
177GO:0009741: response to brassinosteroid2.18E-02
178GO:0009960: endosperm development2.18E-02
179GO:0048544: recognition of pollen2.29E-02
180GO:0006814: sodium ion transport2.29E-02
181GO:0008654: phospholipid biosynthetic process2.41E-02
182GO:0009851: auxin biosynthetic process2.41E-02
183GO:0048825: cotyledon development2.41E-02
184GO:0071554: cell wall organization or biogenesis2.53E-02
185GO:0009630: gravitropism2.65E-02
186GO:0010583: response to cyclopentenone2.65E-02
187GO:0040008: regulation of growth2.70E-02
188GO:0006355: regulation of transcription, DNA-templated2.73E-02
189GO:0010090: trichome morphogenesis2.78E-02
190GO:0007267: cell-cell signaling3.03E-02
191GO:0071805: potassium ion transmembrane transport3.03E-02
192GO:0051607: defense response to virus3.16E-02
193GO:0000910: cytokinesis3.16E-02
194GO:0007166: cell surface receptor signaling pathway3.23E-02
195GO:0008380: RNA splicing3.37E-02
196GO:0010029: regulation of seed germination3.42E-02
197GO:0009816: defense response to bacterium, incompatible interaction3.42E-02
198GO:0010311: lateral root formation4.12E-02
199GO:0048767: root hair elongation4.12E-02
200GO:0006499: N-terminal protein myristoylation4.26E-02
201GO:0009407: toxin catabolic process4.26E-02
RankGO TermAdjusted P value
1GO:0042834: peptidoglycan binding0.00E+00
2GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
3GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
4GO:0004674: protein serine/threonine kinase activity6.78E-07
5GO:0005524: ATP binding4.13E-06
6GO:0033612: receptor serine/threonine kinase binding1.04E-04
7GO:0004672: protein kinase activity1.92E-04
8GO:0004071: aspartate-ammonia ligase activity2.55E-04
9GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity2.55E-04
10GO:0004830: tryptophan-tRNA ligase activity2.55E-04
11GO:0008836: diaminopimelate decarboxylase activity2.55E-04
12GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity2.55E-04
13GO:0004088: carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity2.55E-04
14GO:0016274: protein-arginine N-methyltransferase activity2.55E-04
15GO:0004008: copper-exporting ATPase activity2.55E-04
16GO:0009672: auxin:proton symporter activity4.21E-04
17GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity5.64E-04
18GO:0009884: cytokinin receptor activity5.64E-04
19GO:0035241: protein-arginine omega-N monomethyltransferase activity5.64E-04
20GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity5.64E-04
21GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity5.64E-04
22GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity5.64E-04
23GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity5.64E-04
24GO:0005089: Rho guanyl-nucleotide exchange factor activity5.68E-04
25GO:0010329: auxin efflux transmembrane transporter activity7.37E-04
26GO:0009982: pseudouridine synthase activity7.37E-04
27GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity9.15E-04
28GO:0005034: osmosensor activity9.15E-04
29GO:0008469: histone-arginine N-methyltransferase activity9.15E-04
30GO:0017150: tRNA dihydrouridine synthase activity9.15E-04
31GO:0045548: phenylalanine ammonia-lyase activity9.15E-04
32GO:0032549: ribonucleoside binding9.15E-04
33GO:0042781: 3'-tRNA processing endoribonuclease activity9.15E-04
34GO:0035197: siRNA binding1.31E-03
35GO:0008508: bile acid:sodium symporter activity1.31E-03
36GO:0001872: (1->3)-beta-D-glucan binding1.31E-03
37GO:0050302: indole-3-acetaldehyde oxidase activity1.75E-03
38GO:0005253: anion channel activity1.75E-03
39GO:0016279: protein-lysine N-methyltransferase activity1.75E-03
40GO:0004845: uracil phosphoribosyltransferase activity1.75E-03
41GO:0010385: double-stranded methylated DNA binding1.75E-03
42GO:0004031: aldehyde oxidase activity1.75E-03
43GO:0019199: transmembrane receptor protein kinase activity1.75E-03
44GO:0003727: single-stranded RNA binding1.77E-03
45GO:0008725: DNA-3-methyladenine glycosylase activity2.23E-03
46GO:0004372: glycine hydroxymethyltransferase activity2.23E-03
47GO:0016301: kinase activity2.33E-03
48GO:0019901: protein kinase binding2.57E-03
49GO:0016762: xyloglucan:xyloglucosyl transferase activity2.75E-03
50GO:0005247: voltage-gated chloride channel activity2.75E-03
51GO:2001070: starch binding2.75E-03
52GO:0004605: phosphatidate cytidylyltransferase activity2.75E-03
53GO:1990714: hydroxyproline O-galactosyltransferase activity2.75E-03
54GO:0019900: kinase binding3.30E-03
55GO:0004849: uridine kinase activity3.30E-03
56GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity3.54E-03
57GO:0004871: signal transducer activity3.88E-03
58GO:0005215: transporter activity3.97E-03
59GO:0016798: hydrolase activity, acting on glycosyl bonds4.68E-03
60GO:0005375: copper ion transmembrane transporter activity5.18E-03
61GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity5.18E-03
62GO:0008889: glycerophosphodiester phosphodiesterase activity5.86E-03
63GO:0004673: protein histidine kinase activity7.33E-03
64GO:0001054: RNA polymerase I activity8.11E-03
65GO:0008559: xenobiotic-transporting ATPase activity8.11E-03
66GO:0004521: endoribonuclease activity8.92E-03
67GO:0008168: methyltransferase activity9.12E-03
68GO:0043621: protein self-association9.16E-03
69GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism9.75E-03
70GO:0031072: heat shock protein binding9.75E-03
71GO:0000155: phosphorelay sensor kinase activity9.75E-03
72GO:0003777: microtubule motor activity1.27E-02
73GO:0043424: protein histidine kinase binding1.43E-02
74GO:0005345: purine nucleobase transmembrane transporter activity1.43E-02
75GO:0015079: potassium ion transmembrane transporter activity1.43E-02
76GO:0004176: ATP-dependent peptidase activity1.53E-02
77GO:0042803: protein homodimerization activity1.68E-02
78GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.80E-02
79GO:0008514: organic anion transmembrane transporter activity1.85E-02
80GO:0018024: histone-lysine N-methyltransferase activity1.95E-02
81GO:0004812: aminoacyl-tRNA ligase activity1.95E-02
82GO:0019843: rRNA binding2.05E-02
83GO:0004402: histone acetyltransferase activity2.07E-02
84GO:0003713: transcription coactivator activity2.18E-02
85GO:0005199: structural constituent of cell wall2.18E-02
86GO:0004252: serine-type endopeptidase activity2.27E-02
87GO:0004519: endonuclease activity2.29E-02
88GO:0004675: transmembrane receptor protein serine/threonine kinase activity2.64E-02
89GO:0005515: protein binding2.75E-02
90GO:0000156: phosphorelay response regulator activity2.78E-02
91GO:0016759: cellulose synthase activity2.90E-02
92GO:0008017: microtubule binding2.96E-02
93GO:0008237: metallopeptidase activity3.03E-02
94GO:0016413: O-acetyltransferase activity3.16E-02
95GO:0042802: identical protein binding3.59E-02
96GO:0030247: polysaccharide binding3.70E-02
97GO:0008236: serine-type peptidase activity3.83E-02
98GO:0004693: cyclin-dependent protein serine/threonine kinase activity4.26E-02
99GO:0004222: metalloendopeptidase activity4.26E-02
100GO:0016614: oxidoreductase activity, acting on CH-OH group of donors4.41E-02
101GO:0016788: hydrolase activity, acting on ester bonds4.44E-02
102GO:0003697: single-stranded DNA binding4.70E-02
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Gene type



Gene DE type