GO Enrichment Analysis of Co-expressed Genes with
AT2G40540
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042794: rRNA transcription from plastid promoter | 0.00E+00 |
| 2 | GO:0045014: negative regulation of transcription by glucose | 0.00E+00 |
| 3 | GO:0000819: sister chromatid segregation | 0.00E+00 |
| 4 | GO:0010059: positive regulation of atrichoblast fate specification | 0.00E+00 |
| 5 | GO:0044774: mitotic DNA integrity checkpoint | 0.00E+00 |
| 6 | GO:0090322: regulation of superoxide metabolic process | 0.00E+00 |
| 7 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 8.12E-06 |
| 8 | GO:0042793: transcription from plastid promoter | 3.36E-05 |
| 9 | GO:0006955: immune response | 6.38E-05 |
| 10 | GO:0000910: cytokinesis | 1.14E-04 |
| 11 | GO:0010342: endosperm cellularization | 1.27E-04 |
| 12 | GO:0034757: negative regulation of iron ion transport | 1.27E-04 |
| 13 | GO:0034970: histone H3-R2 methylation | 1.27E-04 |
| 14 | GO:0034972: histone H3-R26 methylation | 1.27E-04 |
| 15 | GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic | 1.27E-04 |
| 16 | GO:1903866: palisade mesophyll development | 1.27E-04 |
| 17 | GO:0010063: positive regulation of trichoblast fate specification | 1.27E-04 |
| 18 | GO:0090063: positive regulation of microtubule nucleation | 1.27E-04 |
| 19 | GO:0042759: long-chain fatty acid biosynthetic process | 1.27E-04 |
| 20 | GO:0034971: histone H3-R17 methylation | 1.27E-04 |
| 21 | GO:0009793: embryo development ending in seed dormancy | 1.68E-04 |
| 22 | GO:0048229: gametophyte development | 2.14E-04 |
| 23 | GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine | 2.94E-04 |
| 24 | GO:0010254: nectary development | 2.94E-04 |
| 25 | GO:0033566: gamma-tubulin complex localization | 2.94E-04 |
| 26 | GO:0009967: positive regulation of signal transduction | 2.94E-04 |
| 27 | GO:0010434: bract formation | 2.94E-04 |
| 28 | GO:0048439: flower morphogenesis | 2.94E-04 |
| 29 | GO:0010271: regulation of chlorophyll catabolic process | 2.94E-04 |
| 30 | GO:0009662: etioplast organization | 2.94E-04 |
| 31 | GO:0080009: mRNA methylation | 2.94E-04 |
| 32 | GO:0006468: protein phosphorylation | 3.81E-04 |
| 33 | GO:0009658: chloroplast organization | 4.47E-04 |
| 34 | GO:0009954: proximal/distal pattern formation | 4.86E-04 |
| 35 | GO:0010476: gibberellin mediated signaling pathway | 4.86E-04 |
| 36 | GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic | 4.86E-04 |
| 37 | GO:0080117: secondary growth | 4.86E-04 |
| 38 | GO:0044210: 'de novo' CTP biosynthetic process | 4.86E-04 |
| 39 | GO:0090391: granum assembly | 4.86E-04 |
| 40 | GO:0042780: tRNA 3'-end processing | 4.86E-04 |
| 41 | GO:0001578: microtubule bundle formation | 4.86E-04 |
| 42 | GO:0016998: cell wall macromolecule catabolic process | 5.39E-04 |
| 43 | GO:0071215: cellular response to abscisic acid stimulus | 6.40E-04 |
| 44 | GO:0042127: regulation of cell proliferation | 6.94E-04 |
| 45 | GO:0010371: regulation of gibberellin biosynthetic process | 6.95E-04 |
| 46 | GO:0010071: root meristem specification | 6.95E-04 |
| 47 | GO:0010239: chloroplast mRNA processing | 6.95E-04 |
| 48 | GO:0007276: gamete generation | 6.95E-04 |
| 49 | GO:0019048: modulation by virus of host morphology or physiology | 6.95E-04 |
| 50 | GO:0031048: chromatin silencing by small RNA | 6.95E-04 |
| 51 | GO:0009558: embryo sac cellularization | 6.95E-04 |
| 52 | GO:0010501: RNA secondary structure unwinding | 8.09E-04 |
| 53 | GO:0006479: protein methylation | 9.21E-04 |
| 54 | GO:0051322: anaphase | 9.21E-04 |
| 55 | GO:0000914: phragmoplast assembly | 9.21E-04 |
| 56 | GO:0051567: histone H3-K9 methylation | 9.21E-04 |
| 57 | GO:2000038: regulation of stomatal complex development | 9.21E-04 |
| 58 | GO:0032876: negative regulation of DNA endoreduplication | 1.16E-03 |
| 59 | GO:0030308: negative regulation of cell growth | 1.16E-03 |
| 60 | GO:0048497: maintenance of floral organ identity | 1.16E-03 |
| 61 | GO:0016554: cytidine to uridine editing | 1.43E-03 |
| 62 | GO:0009913: epidermal cell differentiation | 1.43E-03 |
| 63 | GO:0048831: regulation of shoot system development | 1.43E-03 |
| 64 | GO:0016458: gene silencing | 1.43E-03 |
| 65 | GO:0009643: photosynthetic acclimation | 1.43E-03 |
| 66 | GO:2000037: regulation of stomatal complex patterning | 1.71E-03 |
| 67 | GO:0010310: regulation of hydrogen peroxide metabolic process | 1.71E-03 |
| 68 | GO:0009955: adaxial/abaxial pattern specification | 1.71E-03 |
| 69 | GO:0010067: procambium histogenesis | 1.71E-03 |
| 70 | GO:0048509: regulation of meristem development | 1.71E-03 |
| 71 | GO:0006351: transcription, DNA-templated | 1.95E-03 |
| 72 | GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway | 2.01E-03 |
| 73 | GO:0000712: resolution of meiotic recombination intermediates | 2.01E-03 |
| 74 | GO:0048437: floral organ development | 2.01E-03 |
| 75 | GO:0010492: maintenance of shoot apical meristem identity | 2.32E-03 |
| 76 | GO:0009642: response to light intensity | 2.32E-03 |
| 77 | GO:0030162: regulation of proteolysis | 2.32E-03 |
| 78 | GO:0042255: ribosome assembly | 2.32E-03 |
| 79 | GO:0006353: DNA-templated transcription, termination | 2.32E-03 |
| 80 | GO:0010497: plasmodesmata-mediated intercellular transport | 2.65E-03 |
| 81 | GO:0048574: long-day photoperiodism, flowering | 2.65E-03 |
| 82 | GO:0032544: plastid translation | 2.65E-03 |
| 83 | GO:0000902: cell morphogenesis | 3.00E-03 |
| 84 | GO:0000373: Group II intron splicing | 3.00E-03 |
| 85 | GO:0048589: developmental growth | 3.00E-03 |
| 86 | GO:1900865: chloroplast RNA modification | 3.36E-03 |
| 87 | GO:0006349: regulation of gene expression by genetic imprinting | 3.36E-03 |
| 88 | GO:0016441: posttranscriptional gene silencing | 3.73E-03 |
| 89 | GO:0006259: DNA metabolic process | 3.73E-03 |
| 90 | GO:0010048: vernalization response | 3.73E-03 |
| 91 | GO:0006535: cysteine biosynthetic process from serine | 3.73E-03 |
| 92 | GO:0009688: abscisic acid biosynthetic process | 3.73E-03 |
| 93 | GO:0030422: production of siRNA involved in RNA interference | 3.73E-03 |
| 94 | GO:0006265: DNA topological change | 4.12E-03 |
| 95 | GO:0009089: lysine biosynthetic process via diaminopimelate | 4.12E-03 |
| 96 | GO:0016485: protein processing | 4.12E-03 |
| 97 | GO:0008361: regulation of cell size | 4.52E-03 |
| 98 | GO:0006312: mitotic recombination | 4.52E-03 |
| 99 | GO:0010582: floral meristem determinacy | 4.52E-03 |
| 100 | GO:0010152: pollen maturation | 4.52E-03 |
| 101 | GO:0006417: regulation of translation | 4.74E-03 |
| 102 | GO:0009909: regulation of flower development | 4.74E-03 |
| 103 | GO:0010102: lateral root morphogenesis | 4.93E-03 |
| 104 | GO:0009887: animal organ morphogenesis | 5.36E-03 |
| 105 | GO:0010020: chloroplast fission | 5.36E-03 |
| 106 | GO:0010223: secondary shoot formation | 5.36E-03 |
| 107 | GO:0010025: wax biosynthetic process | 6.25E-03 |
| 108 | GO:0019344: cysteine biosynthetic process | 6.71E-03 |
| 109 | GO:0009944: polarity specification of adaxial/abaxial axis | 6.71E-03 |
| 110 | GO:0010431: seed maturation | 7.68E-03 |
| 111 | GO:0006306: DNA methylation | 7.68E-03 |
| 112 | GO:0009845: seed germination | 8.25E-03 |
| 113 | GO:0010227: floral organ abscission | 8.69E-03 |
| 114 | GO:0001944: vasculature development | 8.69E-03 |
| 115 | GO:0010089: xylem development | 9.21E-03 |
| 116 | GO:0048443: stamen development | 9.21E-03 |
| 117 | GO:0070417: cellular response to cold | 9.75E-03 |
| 118 | GO:0040008: regulation of growth | 1.00E-02 |
| 119 | GO:0010087: phloem or xylem histogenesis | 1.03E-02 |
| 120 | GO:0042631: cellular response to water deprivation | 1.03E-02 |
| 121 | GO:0000226: microtubule cytoskeleton organization | 1.03E-02 |
| 122 | GO:0000271: polysaccharide biosynthetic process | 1.03E-02 |
| 123 | GO:0006342: chromatin silencing | 1.09E-02 |
| 124 | GO:0009960: endosperm development | 1.09E-02 |
| 125 | GO:0045489: pectin biosynthetic process | 1.09E-02 |
| 126 | GO:0010305: leaf vascular tissue pattern formation | 1.09E-02 |
| 127 | GO:0010228: vegetative to reproductive phase transition of meristem | 1.10E-02 |
| 128 | GO:0007018: microtubule-based movement | 1.14E-02 |
| 129 | GO:0007059: chromosome segregation | 1.14E-02 |
| 130 | GO:0048544: recognition of pollen | 1.14E-02 |
| 131 | GO:0007166: cell surface receptor signaling pathway | 1.20E-02 |
| 132 | GO:0009851: auxin biosynthetic process | 1.20E-02 |
| 133 | GO:0048825: cotyledon development | 1.20E-02 |
| 134 | GO:0009749: response to glucose | 1.20E-02 |
| 135 | GO:0009416: response to light stimulus | 1.23E-02 |
| 136 | GO:0008380: RNA splicing | 1.26E-02 |
| 137 | GO:0032502: developmental process | 1.32E-02 |
| 138 | GO:0010583: response to cyclopentenone | 1.32E-02 |
| 139 | GO:0031047: gene silencing by RNA | 1.32E-02 |
| 140 | GO:0016567: protein ubiquitination | 1.33E-02 |
| 141 | GO:0051301: cell division | 1.37E-02 |
| 142 | GO:0010090: trichome morphogenesis | 1.38E-02 |
| 143 | GO:0019760: glucosinolate metabolic process | 1.44E-02 |
| 144 | GO:0051607: defense response to virus | 1.57E-02 |
| 145 | GO:0010027: thylakoid membrane organization | 1.63E-02 |
| 146 | GO:0010029: regulation of seed germination | 1.70E-02 |
| 147 | GO:0009816: defense response to bacterium, incompatible interaction | 1.70E-02 |
| 148 | GO:0010411: xyloglucan metabolic process | 1.83E-02 |
| 149 | GO:0048366: leaf development | 1.93E-02 |
| 150 | GO:0048481: plant ovule development | 1.97E-02 |
| 151 | GO:0000160: phosphorelay signal transduction system | 2.04E-02 |
| 152 | GO:0006499: N-terminal protein myristoylation | 2.11E-02 |
| 153 | GO:0006865: amino acid transport | 2.26E-02 |
| 154 | GO:0016051: carbohydrate biosynthetic process | 2.33E-02 |
| 155 | GO:0045892: negative regulation of transcription, DNA-templated | 2.47E-02 |
| 156 | GO:0030001: metal ion transport | 2.56E-02 |
| 157 | GO:0008283: cell proliferation | 2.80E-02 |
| 158 | GO:0042546: cell wall biogenesis | 2.88E-02 |
| 159 | GO:0009636: response to toxic substance | 3.04E-02 |
| 160 | GO:0006355: regulation of transcription, DNA-templated | 3.15E-02 |
| 161 | GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 3.20E-02 |
| 162 | GO:0006364: rRNA processing | 3.46E-02 |
| 163 | GO:0009736: cytokinin-activated signaling pathway | 3.46E-02 |
| 164 | GO:0048367: shoot system development | 3.98E-02 |
| 165 | GO:0048316: seed development | 3.98E-02 |
| 166 | GO:0009734: auxin-activated signaling pathway | 4.21E-02 |
| 167 | GO:0016569: covalent chromatin modification | 4.26E-02 |
| 168 | GO:0006396: RNA processing | 4.53E-02 |
| 169 | GO:0009908: flower development | 4.78E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042834: peptidoglycan binding | 0.00E+00 |
| 2 | GO:0008836: diaminopimelate decarboxylase activity | 1.27E-04 |
| 3 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 1.27E-04 |
| 4 | GO:0016274: protein-arginine N-methyltransferase activity | 1.27E-04 |
| 5 | GO:0008017: microtubule binding | 2.39E-04 |
| 6 | GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity | 2.94E-04 |
| 7 | GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity | 2.94E-04 |
| 8 | GO:0005078: MAP-kinase scaffold activity | 2.94E-04 |
| 9 | GO:0009884: cytokinin receptor activity | 2.94E-04 |
| 10 | GO:0035241: protein-arginine omega-N monomethyltransferase activity | 2.94E-04 |
| 11 | GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity | 2.94E-04 |
| 12 | GO:0004674: protein serine/threonine kinase activity | 3.48E-04 |
| 13 | GO:0005524: ATP binding | 3.89E-04 |
| 14 | GO:0005034: osmosensor activity | 4.86E-04 |
| 15 | GO:0008469: histone-arginine N-methyltransferase activity | 4.86E-04 |
| 16 | GO:0017150: tRNA dihydrouridine synthase activity | 4.86E-04 |
| 17 | GO:0032947: protein complex scaffold | 4.86E-04 |
| 18 | GO:0042781: 3'-tRNA processing endoribonuclease activity | 4.86E-04 |
| 19 | GO:0003727: single-stranded RNA binding | 6.94E-04 |
| 20 | GO:0035197: siRNA binding | 6.95E-04 |
| 21 | GO:0003916: DNA topoisomerase activity | 6.95E-04 |
| 22 | GO:0003883: CTP synthase activity | 6.95E-04 |
| 23 | GO:0004871: signal transducer activity | 8.75E-04 |
| 24 | GO:0042803: protein homodimerization activity | 8.75E-04 |
| 25 | GO:0010011: auxin binding | 9.21E-04 |
| 26 | GO:0004031: aldehyde oxidase activity | 9.21E-04 |
| 27 | GO:0050302: indole-3-acetaldehyde oxidase activity | 9.21E-04 |
| 28 | GO:0004672: protein kinase activity | 9.79E-04 |
| 29 | GO:0005275: amine transmembrane transporter activity | 1.16E-03 |
| 30 | GO:0003723: RNA binding | 1.17E-03 |
| 31 | GO:0005515: protein binding | 1.34E-03 |
| 32 | GO:0019900: kinase binding | 1.71E-03 |
| 33 | GO:0004124: cysteine synthase activity | 1.71E-03 |
| 34 | GO:0004004: ATP-dependent RNA helicase activity | 1.78E-03 |
| 35 | GO:0003724: RNA helicase activity | 2.65E-03 |
| 36 | GO:0008173: RNA methyltransferase activity | 2.65E-03 |
| 37 | GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity | 2.65E-03 |
| 38 | GO:0004673: protein histidine kinase activity | 3.73E-03 |
| 39 | GO:0008559: xenobiotic-transporting ATPase activity | 4.12E-03 |
| 40 | GO:0004521: endoribonuclease activity | 4.52E-03 |
| 41 | GO:0003777: microtubule motor activity | 4.74E-03 |
| 42 | GO:0000155: phosphorelay sensor kinase activity | 4.93E-03 |
| 43 | GO:0003725: double-stranded RNA binding | 4.93E-03 |
| 44 | GO:0003779: actin binding | 5.91E-03 |
| 45 | GO:0008026: ATP-dependent helicase activity | 6.45E-03 |
| 46 | GO:0043424: protein histidine kinase binding | 7.19E-03 |
| 47 | GO:0019843: rRNA binding | 7.62E-03 |
| 48 | GO:0008094: DNA-dependent ATPase activity | 7.68E-03 |
| 49 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 8.18E-03 |
| 50 | GO:0018024: histone-lysine N-methyltransferase activity | 9.75E-03 |
| 51 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 9.81E-03 |
| 52 | GO:0003713: transcription coactivator activity | 1.09E-02 |
| 53 | GO:0019901: protein kinase binding | 1.20E-02 |
| 54 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 1.26E-02 |
| 55 | GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity | 1.50E-02 |
| 56 | GO:0008237: metallopeptidase activity | 1.50E-02 |
| 57 | GO:0008168: methyltransferase activity | 1.57E-02 |
| 58 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 1.83E-02 |
| 59 | GO:0050660: flavin adenine dinucleotide binding | 1.89E-02 |
| 60 | GO:0016301: kinase activity | 1.99E-02 |
| 61 | GO:0004222: metalloendopeptidase activity | 2.11E-02 |
| 62 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 2.19E-02 |
| 63 | GO:0003697: single-stranded DNA binding | 2.33E-02 |
| 64 | GO:0051539: 4 iron, 4 sulfur cluster binding | 2.56E-02 |
| 65 | GO:0003677: DNA binding | 2.73E-02 |
| 66 | GO:0051537: 2 iron, 2 sulfur cluster binding | 2.96E-02 |
| 67 | GO:0009055: electron carrier activity | 3.21E-02 |
| 68 | GO:0004519: endonuclease activity | 3.26E-02 |
| 69 | GO:0003690: double-stranded DNA binding | 3.54E-02 |
| 70 | GO:0015171: amino acid transmembrane transporter activity | 3.72E-02 |
| 71 | GO:0031625: ubiquitin protein ligase binding | 3.72E-02 |
| 72 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 3.98E-02 |
| 73 | GO:0008289: lipid binding | 4.15E-02 |
| 74 | GO:0016874: ligase activity | 4.26E-02 |
| 75 | GO:0016887: ATPase activity | 4.62E-02 |
| 76 | GO:0004386: helicase activity | 4.72E-02 |