co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G39730

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
2	GO:0005996: monosaccharide metabolic process	0.00E+00
3	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
4	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
5	GO:0015979: photosynthesis	4.98E-12
6	GO:0010207: photosystem II assembly	1.69E-07
7	GO:0009768: photosynthesis, light harvesting in photosystem I	4.72E-07
8	GO:0009645: response to low light intensity stimulus	7.93E-07
9	GO:0032544: plastid translation	1.80E-06
10	GO:0090391: granum assembly	3.72E-06
11	GO:0009773: photosynthetic electron transport in photosystem I	6.06E-06
12	GO:0015995: chlorophyll biosynthetic process	9.58E-06
13	GO:0018298: protein-chromophore linkage	1.19E-05
14	GO:0006546: glycine catabolic process	1.63E-05
15	GO:0010600: regulation of auxin biosynthetic process	1.63E-05
16	GO:0042549: photosystem II stabilization	3.99E-05
17	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	5.62E-05
18	GO:0009704: de-etiolation	9.72E-05
19	GO:0010928: regulation of auxin mediated signaling pathway	9.72E-05
20	GO:0019510: S-adenosylhomocysteine catabolic process	1.42E-04
21	GO:0071277: cellular response to calcium ion	1.42E-04
22	GO:0010205: photoinhibition	1.80E-04
23	GO:0019684: photosynthesis, light reaction	2.49E-04
24	GO:0018119: peptidyl-cysteine S-nitrosylation	2.49E-04
25	GO:0035304: regulation of protein dephosphorylation	3.25E-04
26	GO:0033353: S-adenosylmethionine cycle	3.25E-04
27	GO:0008616: queuosine biosynthetic process	3.25E-04
28	GO:0030388: fructose 1,6-bisphosphate metabolic process	3.25E-04
29	GO:0006094: gluconeogenesis	3.27E-04
30	GO:0019253: reductive pentose-phosphate cycle	3.70E-04
31	GO:0010114: response to red light	4.24E-04
32	GO:0006636: unsaturated fatty acid biosynthetic process	4.63E-04
33	GO:0009644: response to high light intensity	4.69E-04
34	GO:0006518: peptide metabolic process	5.33E-04
35	GO:0006081: cellular aldehyde metabolic process	5.33E-04
36	GO:0006000: fructose metabolic process	5.33E-04
37	GO:0009735: response to cytokinin	6.16E-04
38	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	7.63E-04
39	GO:0055114: oxidation-reduction process	9.22E-04
40	GO:0019464: glycine decarboxylation via glycine cleavage system	1.01E-03
41	GO:0009765: photosynthesis, light harvesting	1.01E-03
42	GO:0045727: positive regulation of translation	1.01E-03
43	GO:0015994: chlorophyll metabolic process	1.01E-03
44	GO:0009107: lipoate biosynthetic process	1.28E-03
45	GO:0006656: phosphatidylcholine biosynthetic process	1.28E-03
46	GO:0043097: pyrimidine nucleoside salvage	1.28E-03
47	GO:0010190: cytochrome b6f complex assembly	1.57E-03
48	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	1.57E-03
49	GO:0050665: hydrogen peroxide biosynthetic process	1.57E-03
50	GO:0006206: pyrimidine nucleobase metabolic process	1.57E-03
51	GO:0045926: negative regulation of growth	1.88E-03
52	GO:0010189: vitamin E biosynthetic process	1.88E-03
53	GO:0009854: oxidative photosynthetic carbon pathway	1.88E-03
54	GO:1900057: positive regulation of leaf senescence	2.21E-03
55	GO:0010161: red light signaling pathway	2.21E-03
56	GO:0010196: nonphotochemical quenching	2.21E-03
57	GO:0010218: response to far red light	2.50E-03
58	GO:0009637: response to blue light	2.86E-03
59	GO:0006002: fructose 6-phosphate metabolic process	2.93E-03
60	GO:0009657: plastid organization	2.93E-03
61	GO:0009658: chloroplast organization	3.30E-03
62	GO:0090333: regulation of stomatal closure	3.31E-03
63	GO:0006783: heme biosynthetic process	3.31E-03
64	GO:0006754: ATP biosynthetic process	3.31E-03
65	GO:0006779: porphyrin-containing compound biosynthetic process	3.71E-03
66	GO:0006782: protoporphyrinogen IX biosynthetic process	4.12E-03
67	GO:0009409: response to cold	4.20E-03
68	GO:0000272: polysaccharide catabolic process	4.55E-03
69	GO:0009585: red, far-red light phototransduction	4.95E-03
70	GO:0009767: photosynthetic electron transport chain	5.45E-03
71	GO:0005986: sucrose biosynthetic process	5.45E-03
72	GO:0006412: translation	5.46E-03
73	GO:0006096: glycolytic process	5.85E-03
74	GO:0032259: methylation	6.73E-03
75	GO:0031408: oxylipin biosynthetic process	8.49E-03
76	GO:0030433: ubiquitin-dependent ERAD pathway	9.05E-03
77	GO:0010017: red or far-red light signaling pathway	9.05E-03
78	GO:0006730: one-carbon metabolic process	9.05E-03
79	GO:0009693: ethylene biosynthetic process	9.62E-03
80	GO:0042742: defense response to bacterium	9.66E-03
81	GO:0019722: calcium-mediated signaling	1.02E-02
82	GO:0042631: cellular response to water deprivation	1.14E-02
83	GO:0006662: glycerol ether metabolic process	1.20E-02
84	GO:0048868: pollen tube development	1.20E-02
85	GO:0009741: response to brassinosteroid	1.20E-02
86	GO:0006814: sodium ion transport	1.26E-02
87	GO:0019252: starch biosynthetic process	1.33E-02
88	GO:0010583: response to cyclopentenone	1.46E-02
89	GO:0007267: cell-cell signaling	1.67E-02
90	GO:0006810: transport	1.72E-02
91	GO:0010027: thylakoid membrane organization	1.81E-02
92	GO:0042254: ribosome biogenesis	1.93E-02
93	GO:0042128: nitrate assimilation	1.96E-02
94	GO:0010411: xyloglucan metabolic process	2.03E-02
95	GO:0080167: response to karrikin	2.35E-02
96	GO:0016051: carbohydrate biosynthetic process	2.59E-02
97	GO:0009853: photorespiration	2.59E-02
98	GO:0034599: cellular response to oxidative stress	2.67E-02
99	GO:0045454: cell redox homeostasis	2.81E-02
100	GO:0006869: lipid transport	3.08E-02
101	GO:0042546: cell wall biogenesis	3.19E-02
102	GO:0000209: protein polyubiquitination	3.19E-02
103	GO:0006979: response to oxidative stress	3.60E-02
104	GO:0006364: rRNA processing	3.83E-02
105	GO:0006417: regulation of translation	4.12E-02
106	GO:0009624: response to nematode	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0052667: phosphomethylethanolamine N-methyltransferase activity	0.00E+00
2	GO:0045550: geranylgeranyl reductase activity	0.00E+00
3	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
4	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
5	GO:0008974: phosphoribulokinase activity	0.00E+00
6	GO:0046408: chlorophyll synthetase activity	0.00E+00
7	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
8	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
9	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
10	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
11	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
12	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
13	GO:0031409: pigment binding	2.91E-07
14	GO:0016168: chlorophyll binding	7.62E-06
15	GO:0030794: (S)-coclaurine-N-methyltransferase activity	1.42E-04
16	GO:0004013: adenosylhomocysteinase activity	1.42E-04
17	GO:0010242: oxygen evolving activity	1.42E-04
18	GO:0019843: rRNA binding	1.64E-04
19	GO:0018708: thiol S-methyltransferase activity	3.25E-04
20	GO:0004802: transketolase activity	3.25E-04
21	GO:0000234: phosphoethanolamine N-methyltransferase activity	3.25E-04
22	GO:0008883: glutamyl-tRNA reductase activity	3.25E-04
23	GO:0047746: chlorophyllase activity	3.25E-04
24	GO:0010297: heteropolysaccharide binding	3.25E-04
25	GO:0004047: aminomethyltransferase activity	3.25E-04
26	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	3.25E-04
27	GO:0008479: queuine tRNA-ribosyltransferase activity	3.25E-04
28	GO:0051537: 2 iron, 2 sulfur cluster binding	4.69E-04
29	GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity	5.33E-04
30	GO:0010277: chlorophyllide a oxygenase [overall] activity	5.33E-04
31	GO:0016992: lipoate synthase activity	5.33E-04
32	GO:0003735: structural constituent of ribosome	6.70E-04
33	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	7.63E-04
34	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	7.63E-04
35	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	7.63E-04
36	GO:0004375: glycine dehydrogenase (decarboxylating) activity	7.63E-04
37	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	7.63E-04
38	GO:0008891: glycolate oxidase activity	1.01E-03
39	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.01E-03
40	GO:0008453: alanine-glyoxylate transaminase activity	1.01E-03
41	GO:0016491: oxidoreductase activity	1.05E-03
42	GO:0048038: quinone binding	1.22E-03
43	GO:0004029: aldehyde dehydrogenase (NAD) activity	1.57E-03
44	GO:0004332: fructose-bisphosphate aldolase activity	1.57E-03
45	GO:0042578: phosphoric ester hydrolase activity	1.57E-03
46	GO:0004849: uridine kinase activity	1.88E-03
47	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	2.93E-03
48	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	3.31E-03
49	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	3.71E-03
50	GO:0005315: inorganic phosphate transmembrane transporter activity	5.45E-03
51	GO:0031072: heat shock protein binding	5.45E-03
52	GO:0008266: poly(U) RNA binding	5.92E-03
53	GO:0005528: FK506 binding	7.42E-03
54	GO:0005515: protein binding	9.82E-03
55	GO:0003727: single-stranded RNA binding	1.02E-02
56	GO:0008514: organic anion transmembrane transporter activity	1.02E-02
57	GO:0047134: protein-disulfide reductase activity	1.08E-02
58	GO:0008080: N-acetyltransferase activity	1.20E-02
59	GO:0050662: coenzyme binding	1.26E-02
60	GO:0004791: thioredoxin-disulfide reductase activity	1.26E-02
61	GO:0010181: FMN binding	1.26E-02
62	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.39E-02
63	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.53E-02
64	GO:0042802: identical protein binding	1.55E-02
65	GO:0008483: transaminase activity	1.67E-02
66	GO:0008168: methyltransferase activity	1.82E-02
67	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.03E-02
68	GO:0004222: metalloendopeptidase activity	2.34E-02
69	GO:0003746: translation elongation factor activity	2.59E-02
70	GO:0003993: acid phosphatase activity	2.67E-02
71	GO:0050661: NADP binding	2.84E-02
72	GO:0043621: protein self-association	3.28E-02
73	GO:0015293: symporter activity	3.37E-02
74	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.46E-02
75	GO:0051287: NAD binding	3.55E-02
76	GO:0009055: electron carrier activity	3.71E-02
77	GO:0003690: double-stranded DNA binding	3.93E-02
78	GO:0031625: ubiquitin protein ligase binding	4.12E-02
79	GO:0008289: lipid binding	4.79E-02
80	GO:0051082: unfolded protein binding	4.92E-02