Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G37860

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1905421: regulation of plant organ morphogenesis0.00E+00
2GO:0043488: regulation of mRNA stability0.00E+00
3GO:2000505: regulation of energy homeostasis0.00E+00
4GO:0017038: protein import0.00E+00
5GO:0030155: regulation of cell adhesion0.00E+00
6GO:0046460: neutral lipid biosynthetic process0.00E+00
7GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
8GO:0031116: positive regulation of microtubule polymerization0.00E+00
9GO:0090071: negative regulation of ribosome biogenesis0.00E+00
10GO:0007037: vacuolar phosphate transport0.00E+00
11GO:0042817: pyridoxal metabolic process0.00E+00
12GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
13GO:0042407: cristae formation0.00E+00
14GO:0046396: D-galacturonate metabolic process0.00E+00
15GO:0090042: tubulin deacetylation0.00E+00
16GO:0006114: glycerol biosynthetic process0.00E+00
17GO:0006429: leucyl-tRNA aminoacylation0.00E+00
18GO:0009658: chloroplast organization4.65E-09
19GO:0009657: plastid organization1.40E-06
20GO:0010020: chloroplast fission1.63E-05
21GO:0006415: translational termination1.63E-04
22GO:0045038: protein import into chloroplast thylakoid membrane2.77E-04
23GO:0042372: phylloquinone biosynthetic process5.17E-04
24GO:0030488: tRNA methylation5.17E-04
25GO:0010729: positive regulation of hydrogen peroxide biosynthetic process5.92E-04
26GO:0006419: alanyl-tRNA aminoacylation5.92E-04
27GO:0000476: maturation of 4.5S rRNA5.92E-04
28GO:0000967: rRNA 5'-end processing5.92E-04
29GO:0051418: microtubule nucleation by microtubule organizing center5.92E-04
30GO:2000025: regulation of leaf formation5.92E-04
31GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process5.92E-04
32GO:0071028: nuclear mRNA surveillance5.92E-04
33GO:0043266: regulation of potassium ion transport5.92E-04
34GO:0042547: cell wall modification involved in multidimensional cell growth5.92E-04
35GO:0042371: vitamin K biosynthetic process5.92E-04
36GO:0019478: D-amino acid catabolic process5.92E-04
37GO:2000021: regulation of ion homeostasis5.92E-04
38GO:0034080: CENP-A containing nucleosome assembly5.92E-04
39GO:1902458: positive regulation of stomatal opening5.92E-04
40GO:0005991: trehalose metabolic process5.92E-04
41GO:0006747: FAD biosynthetic process5.92E-04
42GO:0006353: DNA-templated transcription, termination8.23E-04
43GO:0070413: trehalose metabolism in response to stress8.23E-04
44GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole1.27E-03
45GO:0010198: synergid death1.27E-03
46GO:0006739: NADP metabolic process1.27E-03
47GO:0034475: U4 snRNA 3'-end processing1.27E-03
48GO:1900871: chloroplast mRNA modification1.27E-03
49GO:0033566: gamma-tubulin complex localization1.27E-03
50GO:0007154: cell communication1.27E-03
51GO:0090342: regulation of cell aging1.27E-03
52GO:1900033: negative regulation of trichome patterning1.27E-03
53GO:0034755: iron ion transmembrane transport1.27E-03
54GO:0009220: pyrimidine ribonucleotide biosynthetic process1.27E-03
55GO:0006423: cysteinyl-tRNA aminoacylation1.27E-03
56GO:0006435: threonyl-tRNA aminoacylation1.27E-03
57GO:0001682: tRNA 5'-leader removal1.27E-03
58GO:0031125: rRNA 3'-end processing1.27E-03
59GO:1903426: regulation of reactive oxygen species biosynthetic process1.27E-03
60GO:0071051: polyadenylation-dependent snoRNA 3'-end processing1.27E-03
61GO:0034470: ncRNA processing1.27E-03
62GO:0009793: embryo development ending in seed dormancy1.31E-03
63GO:0040008: regulation of growth1.55E-03
64GO:0006782: protoporphyrinogen IX biosynthetic process1.65E-03
65GO:0009734: auxin-activated signaling pathway1.96E-03
66GO:0016075: rRNA catabolic process2.10E-03
67GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'2.10E-03
68GO:0048281: inflorescence morphogenesis2.10E-03
69GO:0006954: inflammatory response2.10E-03
70GO:0009150: purine ribonucleotide metabolic process2.10E-03
71GO:0015940: pantothenate biosynthetic process2.10E-03
72GO:0001578: microtubule bundle formation2.10E-03
73GO:0045493: xylan catabolic process2.10E-03
74GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition2.10E-03
75GO:0007052: mitotic spindle organization2.10E-03
76GO:0045037: protein import into chloroplast stroma2.19E-03
77GO:2000012: regulation of auxin polar transport2.49E-03
78GO:0009627: systemic acquired resistance2.59E-03
79GO:0015995: chlorophyll biosynthetic process2.77E-03
80GO:0009733: response to auxin2.82E-03
81GO:0010239: chloroplast mRNA processing3.04E-03
82GO:0009226: nucleotide-sugar biosynthetic process3.04E-03
83GO:0008615: pyridoxine biosynthetic process3.04E-03
84GO:0090307: mitotic spindle assembly3.04E-03
85GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity3.04E-03
86GO:0006168: adenine salvage3.04E-03
87GO:0050482: arachidonic acid secretion3.04E-03
88GO:0010148: transpiration3.04E-03
89GO:0043572: plastid fission3.04E-03
90GO:0016556: mRNA modification3.04E-03
91GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center3.04E-03
92GO:0034508: centromere complex assembly3.04E-03
93GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly3.04E-03
94GO:0006166: purine ribonucleoside salvage3.04E-03
95GO:0009102: biotin biosynthetic process3.04E-03
96GO:0090351: seedling development3.15E-03
97GO:0005992: trehalose biosynthetic process3.90E-03
98GO:0051322: anaphase4.10E-03
99GO:0009765: photosynthesis, light harvesting4.10E-03
100GO:0022622: root system development4.10E-03
101GO:0006734: NADH metabolic process4.10E-03
102GO:0044205: 'de novo' UMP biosynthetic process4.10E-03
103GO:0007020: microtubule nucleation4.10E-03
104GO:0048629: trichome patterning4.10E-03
105GO:0010109: regulation of photosynthesis4.10E-03
106GO:0006418: tRNA aminoacylation for protein translation4.32E-03
107GO:0006730: one-carbon metabolic process5.20E-03
108GO:0010158: abaxial cell fate specification5.27E-03
109GO:0046785: microtubule polymerization5.27E-03
110GO:0032543: mitochondrial translation5.27E-03
111GO:0010236: plastoquinone biosynthetic process5.27E-03
112GO:0016120: carotene biosynthetic process5.27E-03
113GO:0016123: xanthophyll biosynthetic process5.27E-03
114GO:0044209: AMP salvage5.27E-03
115GO:0009790: embryo development5.38E-03
116GO:0010190: cytochrome b6f complex assembly6.54E-03
117GO:0016554: cytidine to uridine editing6.54E-03
118GO:0032973: amino acid export6.54E-03
119GO:0050665: hydrogen peroxide biosynthetic process6.54E-03
120GO:0042549: photosystem II stabilization6.54E-03
121GO:0045490: pectin catabolic process6.95E-03
122GO:0008033: tRNA processing7.25E-03
123GO:0009958: positive gravitropism7.82E-03
124GO:0017148: negative regulation of translation7.90E-03
125GO:0046835: carbohydrate phosphorylation7.90E-03
126GO:0034389: lipid particle organization7.90E-03
127GO:1901259: chloroplast rRNA processing7.90E-03
128GO:0009854: oxidative photosynthetic carbon pathway7.90E-03
129GO:0080086: stamen filament development7.90E-03
130GO:0010310: regulation of hydrogen peroxide metabolic process7.90E-03
131GO:0009664: plant-type cell wall organization7.94E-03
132GO:0009772: photosynthetic electron transport in photosystem II9.35E-03
133GO:0043090: amino acid import9.35E-03
134GO:0070370: cellular heat acclimation9.35E-03
135GO:0010050: vegetative phase change9.35E-03
136GO:0006614: SRP-dependent cotranslational protein targeting to membrane9.35E-03
137GO:0010196: nonphotochemical quenching9.35E-03
138GO:0006400: tRNA modification9.35E-03
139GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process9.35E-03
140GO:0010103: stomatal complex morphogenesis9.35E-03
141GO:0032880: regulation of protein localization9.35E-03
142GO:0048528: post-embryonic root development9.35E-03
143GO:0009850: auxin metabolic process1.09E-02
144GO:0006605: protein targeting1.09E-02
145GO:0010078: maintenance of root meristem identity1.09E-02
146GO:2000070: regulation of response to water deprivation1.09E-02
147GO:0042255: ribosome assembly1.09E-02
148GO:0046620: regulation of organ growth1.09E-02
149GO:0000105: histidine biosynthetic process1.09E-02
150GO:0009231: riboflavin biosynthetic process1.09E-02
151GO:0052543: callose deposition in cell wall1.09E-02
152GO:0006644: phospholipid metabolic process1.09E-02
153GO:0001558: regulation of cell growth1.25E-02
154GO:0022900: electron transport chain1.25E-02
155GO:0010204: defense response signaling pathway, resistance gene-independent1.25E-02
156GO:0032544: plastid translation1.25E-02
157GO:0043562: cellular response to nitrogen levels1.25E-02
158GO:0009932: cell tip growth1.25E-02
159GO:0010027: thylakoid membrane organization1.41E-02
160GO:0006396: RNA processing1.42E-02
161GO:0010206: photosystem II repair1.43E-02
162GO:0080144: amino acid homeostasis1.43E-02
163GO:0006098: pentose-phosphate shunt1.43E-02
164GO:0006783: heme biosynthetic process1.43E-02
165GO:0019432: triglyceride biosynthetic process1.43E-02
166GO:0000373: Group II intron splicing1.43E-02
167GO:0071555: cell wall organization1.49E-02
168GO:0005975: carbohydrate metabolic process1.49E-02
169GO:0042761: very long-chain fatty acid biosynthetic process1.60E-02
170GO:0043067: regulation of programmed cell death1.60E-02
171GO:0006779: porphyrin-containing compound biosynthetic process1.60E-02
172GO:1900865: chloroplast RNA modification1.60E-02
173GO:0005982: starch metabolic process1.60E-02
174GO:0010629: negative regulation of gene expression1.79E-02
175GO:0006949: syncytium formation1.79E-02
176GO:0006259: DNA metabolic process1.79E-02
177GO:0019684: photosynthesis, light reaction1.99E-02
178GO:0006265: DNA topological change1.99E-02
179GO:0009089: lysine biosynthetic process via diaminopimelate1.99E-02
180GO:1903507: negative regulation of nucleic acid-templated transcription1.99E-02
181GO:0006879: cellular iron ion homeostasis1.99E-02
182GO:0009684: indoleacetic acid biosynthetic process1.99E-02
183GO:0010015: root morphogenesis1.99E-02
184GO:0048527: lateral root development2.13E-02
185GO:0006790: sulfur compound metabolic process2.19E-02
186GO:0010582: floral meristem determinacy2.19E-02
187GO:0015979: photosynthesis2.28E-02
188GO:0010588: cotyledon vascular tissue pattern formation2.40E-02
189GO:0009725: response to hormone2.40E-02
190GO:0006094: gluconeogenesis2.40E-02
191GO:0006413: translational initiation2.50E-02
192GO:0010207: photosystem II assembly2.61E-02
193GO:0048467: gynoecium development2.61E-02
194GO:0071732: cellular response to nitric oxide2.83E-02
195GO:0000162: tryptophan biosynthetic process3.06E-02
196GO:0010025: wax biosynthetic process3.06E-02
197GO:0006071: glycerol metabolic process3.06E-02
198GO:0016042: lipid catabolic process3.19E-02
199GO:0007166: cell surface receptor signaling pathway3.23E-02
200GO:0009116: nucleoside metabolic process3.30E-02
201GO:0009944: polarity specification of adaxial/abaxial axis3.30E-02
202GO:0030150: protein import into mitochondrial matrix3.30E-02
203GO:0007010: cytoskeleton organization3.30E-02
204GO:0009965: leaf morphogenesis3.39E-02
205GO:0016575: histone deacetylation3.54E-02
206GO:0043622: cortical microtubule organization3.54E-02
207GO:0051302: regulation of cell division3.54E-02
208GO:0061077: chaperone-mediated protein folding3.78E-02
209GO:0048511: rhythmic process3.78E-02
210GO:0009814: defense response, incompatible interaction4.04E-02
211GO:2000022: regulation of jasmonic acid mediated signaling pathway4.04E-02
212GO:0031348: negative regulation of defense response4.04E-02
213GO:0006364: rRNA processing4.06E-02
214GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.29E-02
215GO:0010082: regulation of root meristem growth4.29E-02
216GO:0009686: gibberellin biosynthetic process4.29E-02
217GO:0071369: cellular response to ethylene stimulus4.29E-02
218GO:0001944: vasculature development4.29E-02
219GO:0006012: galactose metabolic process4.29E-02
220GO:0009306: protein secretion4.55E-02
221GO:0016117: carotenoid biosynthetic process4.82E-02
222GO:0008284: positive regulation of cell proliferation4.82E-02
223GO:0009789: positive regulation of abscisic acid-activated signaling pathway4.82E-02
RankGO TermAdjusted P value
1GO:0000121: glycerol-1-phosphatase activity0.00E+00
2GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
3GO:0047912: galacturonokinase activity0.00E+00
4GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
5GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
6GO:0050613: delta14-sterol reductase activity0.00E+00
7GO:0043014: alpha-tubulin binding0.00E+00
8GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
9GO:0051721: protein phosphatase 2A binding0.00E+00
10GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
11GO:0004823: leucine-tRNA ligase activity0.00E+00
12GO:0042903: tubulin deacetylase activity0.00E+00
13GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
14GO:0045435: lycopene epsilon cyclase activity0.00E+00
15GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
16GO:0004822: isoleucine-tRNA ligase activity0.00E+00
17GO:0015267: channel activity0.00E+00
18GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
19GO:0005048: signal sequence binding0.00E+00
20GO:0004076: biotin synthase activity0.00E+00
21GO:0043136: glycerol-3-phosphatase activity0.00E+00
22GO:0004326: tetrahydrofolylpolyglutamate synthase activity1.52E-05
23GO:0002161: aminoacyl-tRNA editing activity5.05E-05
24GO:0030570: pectate lyase activity6.89E-05
25GO:0003747: translation release factor activity7.90E-05
26GO:0016149: translation release factor activity, codon specific1.07E-04
27GO:0043621: protein self-association2.19E-04
28GO:0005528: FK506 binding4.43E-04
29GO:0004176: ATP-dependent peptidase activity5.70E-04
30GO:0005227: calcium activated cation channel activity5.92E-04
31GO:0004733: pyridoxamine-phosphate oxidase activity5.92E-04
32GO:0051777: ent-kaurenoate oxidase activity5.92E-04
33GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity5.92E-04
34GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity5.92E-04
35GO:0004813: alanine-tRNA ligase activity5.92E-04
36GO:0052857: NADPHX epimerase activity5.92E-04
37GO:0004853: uroporphyrinogen decarboxylase activity5.92E-04
38GO:0052856: NADHX epimerase activity5.92E-04
39GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity5.92E-04
40GO:0050139: nicotinate-N-glucosyltransferase activity5.92E-04
41GO:0043022: ribosome binding8.23E-04
42GO:0016829: lyase activity1.10E-03
43GO:0004817: cysteine-tRNA ligase activity1.27E-03
44GO:0080097: L-tryptophan:pyruvate aminotransferase activity1.27E-03
45GO:0004829: threonine-tRNA ligase activity1.27E-03
46GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.27E-03
47GO:0003919: FMN adenylyltransferase activity1.27E-03
48GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity1.27E-03
49GO:0009977: proton motive force dependent protein transmembrane transporter activity1.27E-03
50GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.40E-03
51GO:0008237: metallopeptidase activity1.93E-03
52GO:0070330: aromatase activity2.10E-03
53GO:0004557: alpha-galactosidase activity2.10E-03
54GO:0052692: raffinose alpha-galactosidase activity2.10E-03
55GO:0015462: ATPase-coupled protein transmembrane transporter activity2.10E-03
56GO:0000049: tRNA binding2.19E-03
57GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.81E-03
58GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity3.04E-03
59GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity3.04E-03
60GO:0003999: adenine phosphoribosyltransferase activity3.04E-03
61GO:0048487: beta-tubulin binding3.04E-03
62GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity3.04E-03
63GO:0047627: adenylylsulfatase activity3.04E-03
64GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor3.04E-03
65GO:0016851: magnesium chelatase activity3.04E-03
66GO:0043023: ribosomal large subunit binding3.04E-03
67GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity3.04E-03
68GO:0001872: (1->3)-beta-D-glucan binding3.04E-03
69GO:0016788: hydrolase activity, acting on ester bonds3.77E-03
70GO:0004045: aminoacyl-tRNA hydrolase activity4.10E-03
71GO:0009011: starch synthase activity4.10E-03
72GO:0009044: xylan 1,4-beta-xylosidase activity4.10E-03
73GO:0043015: gamma-tubulin binding4.10E-03
74GO:0019199: transmembrane receptor protein kinase activity4.10E-03
75GO:0042277: peptide binding4.10E-03
76GO:0008891: glycolate oxidase activity4.10E-03
77GO:0046556: alpha-L-arabinofuranosidase activity4.10E-03
78GO:0004335: galactokinase activity4.10E-03
79GO:0004659: prenyltransferase activity4.10E-03
80GO:0004623: phospholipase A2 activity5.27E-03
81GO:0016846: carbon-sulfur lyase activity5.27E-03
82GO:0018685: alkane 1-monooxygenase activity5.27E-03
83GO:0004040: amidase activity5.27E-03
84GO:0004332: fructose-bisphosphate aldolase activity6.54E-03
85GO:0004526: ribonuclease P activity6.54E-03
86GO:0016208: AMP binding6.54E-03
87GO:0042578: phosphoric ester hydrolase activity6.54E-03
88GO:2001070: starch binding6.54E-03
89GO:0080030: methyl indole-3-acetate esterase activity6.54E-03
90GO:0004812: aminoacyl-tRNA ligase activity6.70E-03
91GO:0004017: adenylate kinase activity7.90E-03
92GO:0003730: mRNA 3'-UTR binding7.90E-03
93GO:0004144: diacylglycerol O-acyltransferase activity7.90E-03
94GO:0004723: calcium-dependent protein serine/threonine phosphatase activity7.90E-03
95GO:0010181: FMN binding8.42E-03
96GO:0019899: enzyme binding9.35E-03
97GO:0005525: GTP binding9.59E-03
98GO:0003924: GTPase activity1.05E-02
99GO:0008312: 7S RNA binding1.09E-02
100GO:0016791: phosphatase activity1.18E-02
101GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)1.25E-02
102GO:0008173: RNA methyltransferase activity1.25E-02
103GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.25E-02
104GO:0005381: iron ion transmembrane transporter activity1.60E-02
105GO:0030247: polysaccharide binding1.66E-02
106GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.68E-02
107GO:0004805: trehalose-phosphatase activity1.79E-02
108GO:0008327: methyl-CpG binding1.99E-02
109GO:0047372: acylglycerol lipase activity1.99E-02
110GO:0016614: oxidoreductase activity, acting on CH-OH group of donors2.13E-02
111GO:0004022: alcohol dehydrogenase (NAD) activity2.40E-02
112GO:0000175: 3'-5'-exoribonuclease activity2.40E-02
113GO:0004565: beta-galactosidase activity2.40E-02
114GO:0015266: protein channel activity2.40E-02
115GO:0004675: transmembrane receptor protein serine/threonine kinase activity2.50E-02
116GO:0003723: RNA binding2.54E-02
117GO:0008083: growth factor activity2.61E-02
118GO:0008017: microtubule binding2.89E-02
119GO:0003887: DNA-directed DNA polymerase activity3.06E-02
120GO:0051537: 2 iron, 2 sulfur cluster binding3.27E-02
121GO:0004407: histone deacetylase activity3.30E-02
122GO:0003714: transcription corepressor activity3.30E-02
123GO:0051536: iron-sulfur cluster binding3.30E-02
124GO:0003743: translation initiation factor activity3.31E-02
125GO:0015079: potassium ion transmembrane transporter activity3.54E-02
126GO:0051087: chaperone binding3.54E-02
127GO:0019706: protein-cysteine S-palmitoyltransferase activity3.78E-02
128GO:0008408: 3'-5' exonuclease activity3.78E-02
129GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity4.04E-02
130GO:0003727: single-stranded RNA binding4.55E-02
131GO:0047134: protein-disulfide reductase activity4.82E-02
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Gene type



Gene DE type