co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G35660

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0016553: base conversion or substitution editing	0.00E+00
2	GO:0090279: regulation of calcium ion import	0.00E+00
3	GO:0090470: shoot organ boundary specification	0.00E+00
4	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
5	GO:0005996: monosaccharide metabolic process	0.00E+00
6	GO:0071474: cellular hyperosmotic response	0.00E+00
7	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
8	GO:0034337: RNA folding	0.00E+00
9	GO:0006982: response to lipid hydroperoxide	0.00E+00
10	GO:0002184: cytoplasmic translational termination	0.00E+00
11	GO:0010335: response to non-ionic osmotic stress	0.00E+00
12	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
13	GO:0015995: chlorophyll biosynthetic process	1.37E-17
14	GO:0055114: oxidation-reduction process	1.70E-07
15	GO:0010207: photosystem II assembly	2.15E-07
16	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	5.43E-07
17	GO:0015979: photosynthesis	7.71E-07
18	GO:0010021: amylopectin biosynthetic process	1.56E-06
19	GO:0009658: chloroplast organization	1.69E-06
20	GO:0009773: photosynthetic electron transport in photosystem I	3.60E-06
21	GO:0019252: starch biosynthetic process	5.69E-06
22	GO:0032544: plastid translation	3.69E-05
23	GO:0006783: heme biosynthetic process	5.02E-05
24	GO:0006810: transport	9.90E-05
25	GO:0010600: regulation of auxin biosynthetic process	1.32E-04
26	GO:0015994: chlorophyll metabolic process	1.32E-04
27	GO:0010027: thylakoid membrane organization	2.09E-04
28	GO:0006636: unsaturated fatty acid biosynthetic process	2.60E-04
29	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	3.85E-04
30	GO:0009735: response to cytokinin	4.05E-04
31	GO:0046467: membrane lipid biosynthetic process	4.87E-04
32	GO:1902478: negative regulation of defense response to bacterium, incompatible interaction	4.87E-04
33	GO:0043489: RNA stabilization	4.87E-04
34	GO:1904966: positive regulation of vitamin E biosynthetic process	4.87E-04
35	GO:0043953: protein transport by the Tat complex	4.87E-04
36	GO:0010426: DNA methylation on cytosine within a CHH sequence	4.87E-04
37	GO:0000481: maturation of 5S rRNA	4.87E-04
38	GO:1904964: positive regulation of phytol biosynthetic process	4.87E-04
39	GO:0065002: intracellular protein transmembrane transport	4.87E-04
40	GO:0043686: co-translational protein modification	4.87E-04
41	GO:0043087: regulation of GTPase activity	4.87E-04
42	GO:0071461: cellular response to redox state	4.87E-04
43	GO:0071277: cellular response to calcium ion	4.87E-04
44	GO:0046167: glycerol-3-phosphate biosynthetic process	4.87E-04
45	GO:0043007: maintenance of rDNA	4.87E-04
46	GO:1902458: positive regulation of stomatal opening	4.87E-04
47	GO:0015969: guanosine tetraphosphate metabolic process	4.87E-04
48	GO:0010928: regulation of auxin mediated signaling pathway	6.17E-04
49	GO:0009704: de-etiolation	6.17E-04
50	GO:0016559: peroxisome fission	6.17E-04
51	GO:0071482: cellular response to light stimulus	7.51E-04
52	GO:0080005: photosystem stoichiometry adjustment	1.05E-03
53	GO:0042819: vitamin B6 biosynthetic process	1.05E-03
54	GO:1902326: positive regulation of chlorophyll biosynthetic process	1.05E-03
55	GO:0006650: glycerophospholipid metabolic process	1.05E-03
56	GO:0008616: queuosine biosynthetic process	1.05E-03
57	GO:0006729: tetrahydrobiopterin biosynthetic process	1.05E-03
58	GO:1903426: regulation of reactive oxygen species biosynthetic process	1.05E-03
59	GO:0030388: fructose 1,6-bisphosphate metabolic process	1.05E-03
60	GO:0051262: protein tetramerization	1.05E-03
61	GO:0006779: porphyrin-containing compound biosynthetic process	1.06E-03
62	GO:0006782: protoporphyrinogen IX biosynthetic process	1.23E-03
63	GO:0006412: translation	1.23E-03
64	GO:0018119: peptidyl-cysteine S-nitrosylation	1.42E-03
65	GO:0006000: fructose metabolic process	1.71E-03
66	GO:0006518: peptide metabolic process	1.71E-03
67	GO:0046168: glycerol-3-phosphate catabolic process	1.71E-03
68	GO:0034051: negative regulation of plant-type hypersensitive response	1.71E-03
69	GO:0044375: regulation of peroxisome size	1.71E-03
70	GO:0005977: glycogen metabolic process	1.71E-03
71	GO:0006094: gluconeogenesis	1.85E-03
72	GO:0009767: photosynthetic electron transport chain	1.85E-03
73	GO:0019253: reductive pentose-phosphate cycle	2.09E-03
74	GO:0042254: ribosome biogenesis	2.22E-03
75	GO:0008615: pyridoxine biosynthetic process	2.48E-03
76	GO:0006072: glycerol-3-phosphate metabolic process	2.48E-03
77	GO:0010731: protein glutathionylation	2.48E-03
78	GO:0042823: pyridoxal phosphate biosynthetic process	2.48E-03
79	GO:2001141: regulation of RNA biosynthetic process	2.48E-03
80	GO:0010371: regulation of gibberellin biosynthetic process	2.48E-03
81	GO:0006020: inositol metabolic process	2.48E-03
82	GO:0009152: purine ribonucleotide biosynthetic process	2.48E-03
83	GO:0046653: tetrahydrofolate metabolic process	2.48E-03
84	GO:0009052: pentose-phosphate shunt, non-oxidative branch	2.48E-03
85	GO:0033014: tetrapyrrole biosynthetic process	2.48E-03
86	GO:0034599: cellular response to oxidative stress	3.09E-03
87	GO:0006021: inositol biosynthetic process	3.34E-03
88	GO:0045727: positive regulation of translation	3.34E-03
89	GO:0031408: oxylipin biosynthetic process	3.52E-03
90	GO:0006633: fatty acid biosynthetic process	3.81E-03
91	GO:0019748: secondary metabolic process	3.86E-03
92	GO:0006564: L-serine biosynthetic process	4.28E-03
93	GO:0045038: protein import into chloroplast thylakoid membrane	4.28E-03
94	GO:0043097: pyrimidine nucleoside salvage	4.28E-03
95	GO:0031365: N-terminal protein amino acid modification	4.28E-03
96	GO:0009107: lipoate biosynthetic process	4.28E-03
97	GO:0000304: response to singlet oxygen	4.28E-03
98	GO:0006465: signal peptide processing	4.28E-03
99	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	5.30E-03
100	GO:0006206: pyrimidine nucleobase metabolic process	5.30E-03
101	GO:0006014: D-ribose metabolic process	5.30E-03
102	GO:0046855: inositol phosphate dephosphorylation	5.30E-03
103	GO:0042549: photosystem II stabilization	5.30E-03
104	GO:0006655: phosphatidylglycerol biosynthetic process	5.30E-03
105	GO:0042631: cellular response to water deprivation	5.37E-03
106	GO:0006520: cellular amino acid metabolic process	5.79E-03
107	GO:0010189: vitamin E biosynthetic process	6.40E-03
108	GO:1901259: chloroplast rRNA processing	6.40E-03
109	GO:0000054: ribosomal subunit export from nucleus	6.40E-03
110	GO:0009854: oxidative photosynthetic carbon pathway	6.40E-03
111	GO:1900057: positive regulation of leaf senescence	7.57E-03
112	GO:0009645: response to low light intensity stimulus	7.57E-03
113	GO:0006400: tRNA modification	7.57E-03
114	GO:0010161: red light signaling pathway	7.57E-03
115	GO:0009772: photosynthetic electron transport in photosystem II	7.57E-03
116	GO:0005978: glycogen biosynthetic process	8.81E-03
117	GO:0032508: DNA duplex unwinding	8.81E-03
118	GO:0042255: ribosome assembly	8.81E-03
119	GO:2000070: regulation of response to water deprivation	8.81E-03
120	GO:0006353: DNA-templated transcription, termination	8.81E-03
121	GO:0048564: photosystem I assembly	8.81E-03
122	GO:0007186: G-protein coupled receptor signaling pathway	1.01E-02
123	GO:0006526: arginine biosynthetic process	1.01E-02
124	GO:0009657: plastid organization	1.01E-02
125	GO:0009932: cell tip growth	1.01E-02
126	GO:0006002: fructose 6-phosphate metabolic process	1.01E-02
127	GO:0015996: chlorophyll catabolic process	1.01E-02
128	GO:0090333: regulation of stomatal closure	1.15E-02
129	GO:0006754: ATP biosynthetic process	1.15E-02
130	GO:0090305: nucleic acid phosphodiester bond hydrolysis	1.15E-02
131	GO:0005982: starch metabolic process	1.29E-02
132	GO:0010205: photoinhibition	1.29E-02
133	GO:0009817: defense response to fungus, incompatible interaction	1.36E-02
134	GO:0018298: protein-chromophore linkage	1.36E-02
135	GO:0006535: cysteine biosynthetic process from serine	1.45E-02
136	GO:0043069: negative regulation of programmed cell death	1.45E-02
137	GO:0007568: aging	1.58E-02
138	GO:0006352: DNA-templated transcription, initiation	1.60E-02
139	GO:0008285: negative regulation of cell proliferation	1.60E-02
140	GO:0000272: polysaccharide catabolic process	1.60E-02
141	GO:0006415: translational termination	1.60E-02
142	GO:0019684: photosynthesis, light reaction	1.60E-02
143	GO:0016051: carbohydrate biosynthetic process	1.73E-02
144	GO:0009853: photorespiration	1.73E-02
145	GO:0016024: CDP-diacylglycerol biosynthetic process	1.76E-02
146	GO:0045037: protein import into chloroplast stroma	1.76E-02
147	GO:0006790: sulfur compound metabolic process	1.76E-02
148	GO:0007623: circadian rhythm	1.87E-02
149	GO:0005975: carbohydrate metabolic process	1.90E-02
150	GO:0018107: peptidyl-threonine phosphorylation	1.93E-02
151	GO:0009718: anthocyanin-containing compound biosynthetic process	1.93E-02
152	GO:0009725: response to hormone	1.93E-02
153	GO:0005986: sucrose biosynthetic process	1.93E-02
154	GO:0032259: methylation	2.00E-02
155	GO:0006631: fatty acid metabolic process	2.06E-02
156	GO:0010020: chloroplast fission	2.11E-02
157	GO:0009266: response to temperature stimulus	2.11E-02
158	GO:0034605: cellular response to heat	2.11E-02
159	GO:0046854: phosphatidylinositol phosphorylation	2.28E-02
160	GO:0007031: peroxisome organization	2.28E-02
161	GO:0019762: glucosinolate catabolic process	2.47E-02
162	GO:0009636: response to toxic substance	2.51E-02
163	GO:0000027: ribosomal large subunit assembly	2.66E-02
164	GO:0006289: nucleotide-excision repair	2.66E-02
165	GO:0019344: cysteine biosynthetic process	2.66E-02
166	GO:0009768: photosynthesis, light harvesting in photosystem I	2.85E-02
167	GO:0007017: microtubule-based process	2.85E-02
168	GO:0010073: meristem maintenance	2.85E-02
169	GO:0006364: rRNA processing	3.01E-02
170	GO:0009585: red, far-red light phototransduction	3.01E-02
171	GO:0006306: DNA methylation	3.05E-02
172	GO:0048511: rhythmic process	3.05E-02
173	GO:0010431: seed maturation	3.05E-02
174	GO:0061077: chaperone-mediated protein folding	3.05E-02
175	GO:0030433: ubiquitin-dependent ERAD pathway	3.25E-02
176	GO:0035428: hexose transmembrane transport	3.25E-02
177	GO:0080092: regulation of pollen tube growth	3.25E-02
178	GO:0010017: red or far-red light signaling pathway	3.25E-02
179	GO:0016226: iron-sulfur cluster assembly	3.25E-02
180	GO:0015031: protein transport	3.33E-02
181	GO:0009693: ethylene biosynthetic process	3.46E-02
182	GO:0010227: floral organ abscission	3.46E-02
183	GO:0006096: glycolytic process	3.56E-02
184	GO:0009561: megagametogenesis	3.67E-02
185	GO:0009306: protein secretion	3.67E-02
186	GO:0006817: phosphate ion transport	3.67E-02
187	GO:0042335: cuticle development	4.11E-02
188	GO:0006606: protein import into nucleus	4.11E-02
189	GO:0006662: glycerol ether metabolic process	4.33E-02
190	GO:0010182: sugar mediated signaling pathway	4.33E-02
191	GO:0046323: glucose import	4.33E-02
192	GO:0009741: response to brassinosteroid	4.33E-02
193	GO:0006396: RNA processing	4.40E-02
194	GO:0015986: ATP synthesis coupled proton transport	4.56E-02
195	GO:0009646: response to absence of light	4.56E-02
196	GO:0044550: secondary metabolite biosynthetic process	4.67E-02
197	GO:0009791: post-embryonic development	4.80E-02
198	GO:0008654: phospholipid biosynthetic process	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0045550: geranylgeranyl reductase activity	0.00E+00
2	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
3	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
4	GO:0008974: phosphoribulokinase activity	0.00E+00
5	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
6	GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity	0.00E+00
7	GO:0008465: glycerate dehydrogenase activity	0.00E+00
8	GO:0046408: chlorophyll synthetase activity	0.00E+00
9	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
10	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
11	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
12	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
13	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
14	GO:0009673: low-affinity phosphate transmembrane transporter activity	0.00E+00
15	GO:0019843: rRNA binding	1.97E-10
16	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.56E-06
17	GO:0031072: heat shock protein binding	6.65E-06
18	GO:0048038: quinone binding	6.80E-06
19	GO:0018708: thiol S-methyltransferase activity	1.04E-05
20	GO:0016491: oxidoreductase activity	1.47E-05
21	GO:0016851: magnesium chelatase activity	7.62E-05
22	GO:0008266: poly(U) RNA binding	1.89E-04
23	GO:0003735: structural constituent of ribosome	3.03E-04
24	GO:0080132: fatty acid alpha-hydroxylase activity	4.87E-04
25	GO:0005080: protein kinase C binding	4.87E-04
26	GO:0004325: ferrochelatase activity	4.87E-04
27	GO:0004853: uroporphyrinogen decarboxylase activity	4.87E-04
28	GO:0042586: peptide deformylase activity	4.87E-04
29	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	4.87E-04
30	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	4.87E-04
31	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	4.87E-04
32	GO:0005227: calcium activated cation channel activity	4.87E-04
33	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	7.51E-04
34	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	8.94E-04
35	GO:0051287: NAD binding	9.45E-04
36	GO:0043024: ribosomal small subunit binding	1.05E-03
37	GO:0019172: glyoxalase III activity	1.05E-03
38	GO:0019156: isoamylase activity	1.05E-03
39	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	1.05E-03
40	GO:0008934: inositol monophosphate 1-phosphatase activity	1.05E-03
41	GO:0052833: inositol monophosphate 4-phosphatase activity	1.05E-03
42	GO:0008728: GTP diphosphokinase activity	1.05E-03
43	GO:0036381: pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity	1.05E-03
44	GO:0050017: L-3-cyanoalanine synthase activity	1.05E-03
45	GO:0008883: glutamyl-tRNA reductase activity	1.05E-03
46	GO:0047746: chlorophyllase activity	1.05E-03
47	GO:0042389: omega-3 fatty acid desaturase activity	1.05E-03
48	GO:0010297: heteropolysaccharide binding	1.05E-03
49	GO:0009977: proton motive force dependent protein transmembrane transporter activity	1.05E-03
50	GO:0004617: phosphoglycerate dehydrogenase activity	1.05E-03
51	GO:0052832: inositol monophosphate 3-phosphatase activity	1.05E-03
52	GO:0033201: alpha-1,4-glucan synthase activity	1.05E-03
53	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	1.05E-03
54	GO:0008479: queuine tRNA-ribosyltransferase activity	1.05E-03
55	GO:0003844: 1,4-alpha-glucan branching enzyme activity	1.05E-03
56	GO:0016630: protochlorophyllide reductase activity	1.05E-03
57	GO:0043169: cation binding	1.71E-03
58	GO:0004373: glycogen (starch) synthase activity	1.71E-03
59	GO:0016992: lipoate synthase activity	1.71E-03
60	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	1.71E-03
61	GO:0004751: ribose-5-phosphate isomerase activity	1.71E-03
62	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.71E-03
63	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	1.71E-03
64	GO:0008864: formyltetrahydrofolate deformylase activity	1.71E-03
65	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.71E-03
66	GO:0010277: chlorophyllide a oxygenase [overall] activity	1.71E-03
67	GO:0005504: fatty acid binding	1.71E-03
68	GO:0004565: beta-galactosidase activity	1.85E-03
69	GO:0051082: unfolded protein binding	1.90E-03
70	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	2.48E-03
71	GO:0043023: ribosomal large subunit binding	2.48E-03
72	GO:0005528: FK506 binding	2.90E-03
73	GO:0003746: translation elongation factor activity	2.92E-03
74	GO:0009011: starch synthase activity	3.34E-03
75	GO:0043495: protein anchor	3.34E-03
76	GO:0001053: plastid sigma factor activity	3.34E-03
77	GO:0070628: proteasome binding	3.34E-03
78	GO:0045430: chalcone isomerase activity	3.34E-03
79	GO:0016987: sigma factor activity	3.34E-03
80	GO:0003959: NADPH dehydrogenase activity	4.28E-03
81	GO:0051537: 2 iron, 2 sulfur cluster binding	4.47E-03
82	GO:0003727: single-stranded RNA binding	4.58E-03
83	GO:0004556: alpha-amylase activity	5.30E-03
84	GO:0004462: lactoylglutathione lyase activity	5.30E-03
85	GO:0004130: cytochrome-c peroxidase activity	5.30E-03
86	GO:0035673: oligopeptide transmembrane transporter activity	5.30E-03
87	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	5.30E-03
88	GO:0042578: phosphoric ester hydrolase activity	5.30E-03
89	GO:0004332: fructose-bisphosphate aldolase activity	5.30E-03
90	GO:0031593: polyubiquitin binding	5.30E-03
91	GO:0042802: identical protein binding	6.34E-03
92	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	6.40E-03
93	GO:0004849: uridine kinase activity	6.40E-03
94	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	6.40E-03
95	GO:0004747: ribokinase activity	6.40E-03
96	GO:0005261: cation channel activity	6.40E-03
97	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	6.40E-03
98	GO:0004124: cysteine synthase activity	6.40E-03
99	GO:0019899: enzyme binding	7.57E-03
100	GO:0005506: iron ion binding	7.57E-03
101	GO:0004033: aldo-keto reductase (NADP) activity	8.81E-03
102	GO:0008865: fructokinase activity	8.81E-03
103	GO:0008135: translation factor activity, RNA binding	1.01E-02
104	GO:0016168: chlorophyll binding	1.10E-02
105	GO:0030955: potassium ion binding	1.29E-02
106	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	1.29E-02
107	GO:0004743: pyruvate kinase activity	1.29E-02
108	GO:0005525: GTP binding	1.43E-02
109	GO:0030234: enzyme regulator activity	1.45E-02
110	GO:0004222: metalloendopeptidase activity	1.50E-02
111	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.60E-02
112	GO:0015198: oligopeptide transporter activity	1.76E-02
113	GO:0005315: inorganic phosphate transmembrane transporter activity	1.93E-02
114	GO:0004364: glutathione transferase activity	2.14E-02
115	GO:0004185: serine-type carboxypeptidase activity	2.23E-02
116	GO:0009055: electron carrier activity	2.37E-02
117	GO:0035091: phosphatidylinositol binding	2.42E-02
118	GO:0031409: pigment binding	2.47E-02
119	GO:0051536: iron-sulfur cluster binding	2.66E-02
120	GO:0043130: ubiquitin binding	2.66E-02
121	GO:0008168: methyltransferase activity	3.08E-02
122	GO:0003690: double-stranded DNA binding	3.12E-02
123	GO:0004601: peroxidase activity	3.23E-02
124	GO:0022891: substrate-specific transmembrane transporter activity	3.46E-02
125	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	3.67E-02
126	GO:0047134: protein-disulfide reductase activity	3.89E-02
127	GO:0016887: ATPase activity	4.05E-02
128	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	4.33E-02
129	GO:0050662: coenzyme binding	4.56E-02
130	GO:0004791: thioredoxin-disulfide reductase activity	4.56E-02
131	GO:0005355: glucose transmembrane transporter activity	4.56E-02
132	GO:0004872: receptor activity	4.80E-02
133	GO:0005515: protein binding	4.85E-02