co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G35260

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
2	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
3	GO:1904966: positive regulation of vitamin E biosynthetic process	0.00E+00
4	GO:0005996: monosaccharide metabolic process	0.00E+00
5	GO:0015717: triose phosphate transport	0.00E+00
6	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
7	GO:1904964: positive regulation of phytol biosynthetic process	0.00E+00
8	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
9	GO:0015979: photosynthesis	2.69E-16
10	GO:0055114: oxidation-reduction process	4.11E-09
11	GO:0015995: chlorophyll biosynthetic process	1.44E-08
12	GO:0010207: photosystem II assembly	7.09E-08
13	GO:0032544: plastid translation	2.88E-07
14	GO:0009773: photosynthetic electron transport in photosystem I	1.47E-06
15	GO:0006094: gluconeogenesis	2.76E-06
16	GO:0019253: reductive pentose-phosphate cycle	3.67E-06
17	GO:0006636: unsaturated fatty acid biosynthetic process	6.10E-06
18	GO:0030388: fructose 1,6-bisphosphate metabolic process	6.16E-06
19	GO:1902326: positive regulation of chlorophyll biosynthetic process	6.16E-06
20	GO:0009772: photosynthetic electron transport in photosystem II	8.89E-06
21	GO:0018298: protein-chromophore linkage	1.26E-05
22	GO:0006000: fructose metabolic process	2.16E-05
23	GO:0009735: response to cytokinin	2.41E-05
24	GO:0034599: cellular response to oxidative stress	2.51E-05
25	GO:0009658: chloroplast organization	3.30E-05
26	GO:0019252: starch biosynthetic process	4.45E-05
27	GO:0010600: regulation of auxin biosynthetic process	8.40E-05
28	GO:0009768: photosynthesis, light harvesting in photosystem I	1.98E-04
29	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.54E-04
30	GO:0009854: oxidative photosynthetic carbon pathway	2.54E-04
31	GO:0010196: nonphotochemical quenching	3.30E-04
32	GO:0031998: regulation of fatty acid beta-oxidation	3.70E-04
33	GO:0034337: RNA folding	3.70E-04
34	GO:0019510: S-adenosylhomocysteine catabolic process	3.70E-04
35	GO:0051180: vitamin transport	3.70E-04
36	GO:0030974: thiamine pyrophosphate transport	3.70E-04
37	GO:0046467: membrane lipid biosynthetic process	3.70E-04
38	GO:0043953: protein transport by the Tat complex	3.70E-04
39	GO:0051775: response to redox state	3.70E-04
40	GO:0071277: cellular response to calcium ion	3.70E-04
41	GO:0065002: intracellular protein transmembrane transport	3.70E-04
42	GO:0043087: regulation of GTPase activity	3.70E-04
43	GO:0071461: cellular response to redox state	3.70E-04
44	GO:0080093: regulation of photorespiration	3.70E-04
45	GO:0010928: regulation of auxin mediated signaling pathway	4.14E-04
46	GO:0009704: de-etiolation	4.14E-04
47	GO:0006662: glycerol ether metabolic process	4.41E-04
48	GO:0006002: fructose 6-phosphate metabolic process	5.06E-04
49	GO:0071482: cellular response to light stimulus	5.06E-04
50	GO:0006783: heme biosynthetic process	6.07E-04
51	GO:0006754: ATP biosynthetic process	6.07E-04
52	GO:0009409: response to cold	7.15E-04
53	GO:0006779: porphyrin-containing compound biosynthetic process	7.16E-04
54	GO:0080005: photosystem stoichiometry adjustment	8.05E-04
55	GO:0033353: S-adenosylmethionine cycle	8.05E-04
56	GO:0015893: drug transport	8.05E-04
57	GO:0008616: queuosine biosynthetic process	8.05E-04
58	GO:0018119: peptidyl-cysteine S-nitrosylation	9.61E-04
59	GO:0042742: defense response to bacterium	1.03E-03
60	GO:0005986: sucrose biosynthetic process	1.24E-03
61	GO:0006108: malate metabolic process	1.24E-03
62	GO:0090391: granum assembly	1.30E-03
63	GO:0006518: peptide metabolic process	1.30E-03
64	GO:0035436: triose phosphate transmembrane transport	1.30E-03
65	GO:0044375: regulation of peroxisome size	1.30E-03
66	GO:0006081: cellular aldehyde metabolic process	1.30E-03
67	GO:0007031: peroxisome organization	1.57E-03
68	GO:0009853: photorespiration	1.73E-03
69	GO:0071484: cellular response to light intensity	1.88E-03
70	GO:0009152: purine ribonucleotide biosynthetic process	1.88E-03
71	GO:0046653: tetrahydrofolate metabolic process	1.88E-03
72	GO:0006107: oxaloacetate metabolic process	1.88E-03
73	GO:0033014: tetrapyrrole biosynthetic process	1.88E-03
74	GO:0010731: protein glutathionylation	1.88E-03
75	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.88E-03
76	GO:2001141: regulation of RNA biosynthetic process	1.88E-03
77	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.88E-03
78	GO:0010114: response to red light	2.40E-03
79	GO:0015976: carbon utilization	2.52E-03
80	GO:0015689: molybdate ion transport	2.52E-03
81	GO:0009765: photosynthesis, light harvesting	2.52E-03
82	GO:0006109: regulation of carbohydrate metabolic process	2.52E-03
83	GO:0045727: positive regulation of translation	2.52E-03
84	GO:0015994: chlorophyll metabolic process	2.52E-03
85	GO:0006546: glycine catabolic process	2.52E-03
86	GO:0006734: NADH metabolic process	2.52E-03
87	GO:0015713: phosphoglycerate transport	2.52E-03
88	GO:0010021: amylopectin biosynthetic process	2.52E-03
89	GO:0006810: transport	2.58E-03
90	GO:0032259: methylation	2.80E-03
91	GO:0009107: lipoate biosynthetic process	3.23E-03
92	GO:0006656: phosphatidylcholine biosynthetic process	3.23E-03
93	GO:0043097: pyrimidine nucleoside salvage	3.23E-03
94	GO:0006097: glyoxylate cycle	3.23E-03
95	GO:0009585: red, far-red light phototransduction	3.51E-03
96	GO:0042631: cellular response to water deprivation	3.57E-03
97	GO:0042549: photosystem II stabilization	3.99E-03
98	GO:0010190: cytochrome b6f complex assembly	3.99E-03
99	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	3.99E-03
100	GO:0006206: pyrimidine nucleobase metabolic process	3.99E-03
101	GO:0009643: photosynthetic acclimation	3.99E-03
102	GO:0050665: hydrogen peroxide biosynthetic process	3.99E-03
103	GO:0015986: ATP synthesis coupled proton transport	4.13E-03
104	GO:0006096: glycolytic process	4.35E-03
105	GO:0043086: negative regulation of catalytic activity	4.35E-03
106	GO:0045926: negative regulation of growth	4.81E-03
107	GO:0017148: negative regulation of translation	4.81E-03
108	GO:1901259: chloroplast rRNA processing	4.81E-03
109	GO:0010189: vitamin E biosynthetic process	4.81E-03
110	GO:0010161: red light signaling pathway	5.68E-03
111	GO:1900057: positive regulation of leaf senescence	5.68E-03
112	GO:0009645: response to low light intensity stimulus	5.68E-03
113	GO:0016559: peroxisome fission	6.61E-03
114	GO:0005978: glycogen biosynthetic process	6.61E-03
115	GO:0009642: response to light intensity	6.61E-03
116	GO:0042255: ribosome assembly	6.61E-03
117	GO:0006353: DNA-templated transcription, termination	6.61E-03
118	GO:0010027: thylakoid membrane organization	6.87E-03
119	GO:0009932: cell tip growth	7.58E-03
120	GO:0006526: arginine biosynthetic process	7.58E-03
121	GO:0009657: plastid organization	7.58E-03
122	GO:0005975: carbohydrate metabolic process	7.88E-03
123	GO:0009416: response to light stimulus	8.26E-03
124	GO:0045454: cell redox homeostasis	8.35E-03
125	GO:0010206: photosystem II repair	8.60E-03
126	GO:0006098: pentose-phosphate shunt	8.60E-03
127	GO:0090333: regulation of stomatal closure	8.60E-03
128	GO:0010205: photoinhibition	9.67E-03
129	GO:0010267: production of ta-siRNAs involved in RNA interference	9.67E-03
130	GO:0042761: very long-chain fatty acid biosynthetic process	9.67E-03
131	GO:0010218: response to far red light	9.91E-03
132	GO:0006782: protoporphyrinogen IX biosynthetic process	1.08E-02
133	GO:0009637: response to blue light	1.14E-02
134	GO:0006099: tricarboxylic acid cycle	1.19E-02
135	GO:0019684: photosynthesis, light reaction	1.19E-02
136	GO:0009698: phenylpropanoid metabolic process	1.19E-02
137	GO:0043085: positive regulation of catalytic activity	1.19E-02
138	GO:0006352: DNA-templated transcription, initiation	1.19E-02
139	GO:0000272: polysaccharide catabolic process	1.19E-02
140	GO:0016925: protein sumoylation	1.32E-02
141	GO:0009725: response to hormone	1.44E-02
142	GO:0009767: photosynthetic electron transport chain	1.44E-02
143	GO:0006006: glucose metabolic process	1.44E-02
144	GO:0018107: peptidyl-threonine phosphorylation	1.44E-02
145	GO:0009744: response to sucrose	1.47E-02
146	GO:0005985: sucrose metabolic process	1.70E-02
147	GO:0019762: glucosinolate catabolic process	1.84E-02
148	GO:0009833: plant-type primary cell wall biogenesis	1.84E-02
149	GO:0000027: ribosomal large subunit assembly	1.98E-02
150	GO:0006406: mRNA export from nucleus	1.98E-02
151	GO:0061077: chaperone-mediated protein folding	2.27E-02
152	GO:0031408: oxylipin biosynthetic process	2.27E-02
153	GO:0019748: secondary metabolic process	2.42E-02
154	GO:0030245: cellulose catabolic process	2.42E-02
155	GO:0016226: iron-sulfur cluster assembly	2.42E-02
156	GO:0010017: red or far-red light signaling pathway	2.42E-02
157	GO:0030433: ubiquitin-dependent ERAD pathway	2.42E-02
158	GO:0006730: one-carbon metabolic process	2.42E-02
159	GO:0007005: mitochondrion organization	2.42E-02
160	GO:0009693: ethylene biosynthetic process	2.58E-02
161	GO:0006817: phosphate ion transport	2.73E-02
162	GO:0019722: calcium-mediated signaling	2.73E-02
163	GO:0009306: protein secretion	2.73E-02
164	GO:0071555: cell wall organization	2.77E-02
165	GO:0044550: secondary metabolite biosynthetic process	2.81E-02
166	GO:0006396: RNA processing	2.92E-02
167	GO:0009742: brassinosteroid mediated signaling pathway	3.01E-02
168	GO:0006606: protein import into nucleus	3.06E-02
169	GO:0009741: response to brassinosteroid	3.23E-02
170	GO:0006520: cellular amino acid metabolic process	3.23E-02
171	GO:0006814: sodium ion transport	3.40E-02
172	GO:0009058: biosynthetic process	3.74E-02
173	GO:0000302: response to reactive oxygen species	3.75E-02
174	GO:0055085: transmembrane transport	3.83E-02
175	GO:0032502: developmental process	3.93E-02
176	GO:0010583: response to cyclopentenone	3.93E-02
177	GO:0031047: gene silencing by RNA	3.93E-02
178	GO:0009567: double fertilization forming a zygote and endosperm	4.30E-02
179	GO:0007267: cell-cell signaling	4.49E-02
180	GO:0007623: circadian rhythm	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
2	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
3	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
4	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
5	GO:0046863: ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity	0.00E+00
6	GO:0030794: (S)-coclaurine-N-methyltransferase activity	0.00E+00
7	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
8	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
9	GO:0052667: phosphomethylethanolamine N-methyltransferase activity	0.00E+00
10	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
11	GO:0045550: geranylgeranyl reductase activity	0.00E+00
12	GO:0009673: low-affinity phosphate transmembrane transporter activity	0.00E+00
13	GO:0090711: FMN hydrolase activity	0.00E+00
14	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
15	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
16	GO:0008974: phosphoribulokinase activity	0.00E+00
17	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
18	GO:0008465: glycerate dehydrogenase activity	0.00E+00
19	GO:0046408: chlorophyll synthetase activity	0.00E+00
20	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
21	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
22	GO:0018708: thiol S-methyltransferase activity	6.16E-06
23	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	6.16E-06
24	GO:0016168: chlorophyll binding	7.38E-06
25	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	1.91E-05
26	GO:0019843: rRNA binding	3.39E-05
27	GO:0016851: magnesium chelatase activity	4.74E-05
28	GO:0016491: oxidoreductase activity	5.03E-05
29	GO:0009011: starch synthase activity	8.40E-05
30	GO:0043495: protein anchor	8.40E-05
31	GO:0031072: heat shock protein binding	8.76E-05
32	GO:0031409: pigment binding	1.47E-04
33	GO:0004332: fructose-bisphosphate aldolase activity	1.88E-04
34	GO:0016615: malate dehydrogenase activity	1.88E-04
35	GO:0030060: L-malate dehydrogenase activity	2.54E-04
36	GO:0019899: enzyme binding	3.30E-04
37	GO:0047134: protein-disulfide reductase activity	3.61E-04
38	GO:0035671: enone reductase activity	3.70E-04
39	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	3.70E-04
40	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	3.70E-04
41	GO:0090422: thiamine pyrophosphate transporter activity	3.70E-04
42	GO:0004013: adenosylhomocysteinase activity	3.70E-04
43	GO:0004325: ferrochelatase activity	3.70E-04
44	GO:0008746: NAD(P)+ transhydrogenase activity	3.70E-04
45	GO:0010313: phytochrome binding	3.70E-04
46	GO:0004791: thioredoxin-disulfide reductase activity	4.85E-04
47	GO:0051287: NAD binding	5.07E-04
48	GO:0048038: quinone binding	5.79E-04
49	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	6.84E-04
50	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	7.16E-04
51	GO:0042802: identical protein binding	7.39E-04
52	GO:0010297: heteropolysaccharide binding	8.05E-04
53	GO:0009977: proton motive force dependent protein transmembrane transporter activity	8.05E-04
54	GO:0004047: aminomethyltransferase activity	8.05E-04
55	GO:0033201: alpha-1,4-glucan synthase activity	8.05E-04
56	GO:0008479: queuine tRNA-ribosyltransferase activity	8.05E-04
57	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	8.05E-04
58	GO:0000234: phosphoethanolamine N-methyltransferase activity	8.05E-04
59	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	8.05E-04
60	GO:0008883: glutamyl-tRNA reductase activity	8.05E-04
61	GO:0047746: chlorophyllase activity	8.05E-04
62	GO:0042389: omega-3 fatty acid desaturase activity	8.05E-04
63	GO:0030234: enzyme regulator activity	8.35E-04
64	GO:0004565: beta-galactosidase activity	1.24E-03
65	GO:0005315: inorganic phosphate transmembrane transporter activity	1.24E-03
66	GO:0019948: SUMO activating enzyme activity	1.30E-03
67	GO:0010277: chlorophyllide a oxygenase [overall] activity	1.30E-03
68	GO:0004373: glycogen (starch) synthase activity	1.30E-03
69	GO:0016992: lipoate synthase activity	1.30E-03
70	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.30E-03
71	GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity	1.30E-03
72	GO:0071917: triose-phosphate transmembrane transporter activity	1.30E-03
73	GO:0008864: formyltetrahydrofolate deformylase activity	1.30E-03
74	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.30E-03
75	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	1.88E-03
76	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	1.88E-03
77	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	1.88E-03
78	GO:0048027: mRNA 5'-UTR binding	1.88E-03
79	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	1.88E-03
80	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.88E-03
81	GO:0001053: plastid sigma factor activity	2.52E-03
82	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.52E-03
83	GO:0008453: alanine-glyoxylate transaminase activity	2.52E-03
84	GO:0016987: sigma factor activity	2.52E-03
85	GO:0008878: glucose-1-phosphate adenylyltransferase activity	2.52E-03
86	GO:0052793: pectin acetylesterase activity	2.52E-03
87	GO:0015098: molybdate ion transmembrane transporter activity	2.52E-03
88	GO:0008891: glycolate oxidase activity	2.52E-03
89	GO:0015120: phosphoglycerate transmembrane transporter activity	2.52E-03
90	GO:0022891: substrate-specific transmembrane transporter activity	2.80E-03
91	GO:0003727: single-stranded RNA binding	3.04E-03
92	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	3.23E-03
93	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	3.84E-03
94	GO:0004029: aldehyde dehydrogenase (NAD) activity	3.99E-03
95	GO:0004130: cytochrome-c peroxidase activity	3.99E-03
96	GO:0042578: phosphoric ester hydrolase activity	3.99E-03
97	GO:0008168: methyltransferase activity	4.32E-03
98	GO:0004849: uridine kinase activity	4.81E-03
99	GO:0051082: unfolded protein binding	5.50E-03
100	GO:0015035: protein disulfide oxidoreductase activity	5.72E-03
101	GO:0004033: aldo-keto reductase (NADP) activity	6.61E-03
102	GO:0071949: FAD binding	8.60E-03
103	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	8.60E-03
104	GO:0008047: enzyme activator activity	1.08E-02
105	GO:0050661: NADP binding	1.30E-02
106	GO:0003735: structural constituent of ribosome	1.40E-02
107	GO:0004089: carbonate dehydratase activity	1.44E-02
108	GO:0004185: serine-type carboxypeptidase activity	1.47E-02
109	GO:0005507: copper ion binding	1.52E-02
110	GO:0008266: poly(U) RNA binding	1.57E-02
111	GO:0051537: 2 iron, 2 sulfur cluster binding	1.60E-02
112	GO:0043621: protein self-association	1.60E-02
113	GO:0005515: protein binding	1.66E-02
114	GO:0015293: symporter activity	1.66E-02
115	GO:0004857: enzyme inhibitor activity	1.98E-02
116	GO:0005528: FK506 binding	1.98E-02
117	GO:0051536: iron-sulfur cluster binding	1.98E-02
118	GO:0003690: double-stranded DNA binding	2.06E-02
119	GO:0016760: cellulose synthase (UDP-forming) activity	2.58E-02
120	GO:0008810: cellulase activity	2.58E-02
121	GO:0008514: organic anion transmembrane transporter activity	2.73E-02
122	GO:0052689: carboxylic ester hydrolase activity	2.86E-02
123	GO:0008080: N-acetyltransferase activity	3.23E-02
124	GO:0050662: coenzyme binding	3.40E-02
125	GO:0010181: FMN binding	3.40E-02
126	GO:0004872: receptor activity	3.57E-02
127	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.75E-02
128	GO:0004518: nuclease activity	3.93E-02
129	GO:0016787: hydrolase activity	4.05E-02
130	GO:0008565: protein transporter activity	4.24E-02
131	GO:0016791: phosphatase activity	4.30E-02
132	GO:0016759: cellulose synthase activity	4.30E-02
133	GO:0008483: transaminase activity	4.49E-02
134	GO:0016722: oxidoreductase activity, oxidizing metal ions	4.49E-02
135	GO:0046910: pectinesterase inhibitor activity	4.55E-02