Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G35130

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0043488: regulation of mRNA stability0.00E+00
2GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
3GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
4GO:0090071: negative regulation of ribosome biogenesis0.00E+00
5GO:0046460: neutral lipid biosynthetic process0.00E+00
6GO:0042407: cristae formation0.00E+00
7GO:0044249: cellular biosynthetic process0.00E+00
8GO:0031116: positive regulation of microtubule polymerization0.00E+00
9GO:0051958: methotrexate transport0.00E+00
10GO:0090042: tubulin deacetylation0.00E+00
11GO:0006399: tRNA metabolic process0.00E+00
12GO:0009658: chloroplast organization3.62E-09
13GO:0009734: auxin-activated signaling pathway4.05E-06
14GO:0046620: regulation of organ growth1.80E-05
15GO:0006353: DNA-templated transcription, termination1.80E-05
16GO:0009657: plastid organization2.57E-05
17GO:0010020: chloroplast fission1.37E-04
18GO:0010190: cytochrome b6f complex assembly2.27E-04
19GO:0006400: tRNA modification3.95E-04
20GO:1902458: positive regulation of stomatal opening4.18E-04
21GO:0050801: ion homeostasis4.18E-04
22GO:0006177: GMP biosynthetic process4.18E-04
23GO:0010729: positive regulation of hydrogen peroxide biosynthetic process4.18E-04
24GO:0006419: alanyl-tRNA aminoacylation4.18E-04
25GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process4.18E-04
26GO:0000476: maturation of 4.5S rRNA4.18E-04
27GO:0000967: rRNA 5'-end processing4.18E-04
28GO:0043266: regulation of potassium ion transport4.18E-04
29GO:0010480: microsporocyte differentiation4.18E-04
30GO:0042371: vitamin K biosynthetic process4.18E-04
31GO:2000021: regulation of ion homeostasis4.18E-04
32GO:0009926: auxin polar transport4.98E-04
33GO:0071482: cellular response to light stimulus6.03E-04
34GO:0040008: regulation of growth6.13E-04
35GO:0009733: response to auxin7.09E-04
36GO:0000373: Group II intron splicing7.22E-04
37GO:1903426: regulation of reactive oxygen species biosynthetic process9.05E-04
38GO:0034470: ncRNA processing9.05E-04
39GO:0060359: response to ammonium ion9.05E-04
40GO:0006423: cysteinyl-tRNA aminoacylation9.05E-04
41GO:0009220: pyrimidine ribonucleotide biosynthetic process9.05E-04
42GO:0001682: tRNA 5'-leader removal9.05E-04
43GO:0006352: DNA-templated transcription, initiation1.14E-03
44GO:0045037: protein import into chloroplast stroma1.30E-03
45GO:0010411: xyloglucan metabolic process1.42E-03
46GO:0043157: response to cation stress1.47E-03
47GO:0005977: glycogen metabolic process1.47E-03
48GO:0010447: response to acidic pH1.47E-03
49GO:0006954: inflammatory response1.47E-03
50GO:0001578: microtubule bundle formation1.47E-03
51GO:0045493: xylan catabolic process1.47E-03
52GO:0006760: folic acid-containing compound metabolic process1.47E-03
53GO:0009793: embryo development ending in seed dormancy1.75E-03
54GO:0071732: cellular response to nitric oxide1.87E-03
55GO:0090351: seedling development1.87E-03
56GO:0046653: tetrahydrofolate metabolic process2.13E-03
57GO:0010239: chloroplast mRNA processing2.13E-03
58GO:0009226: nucleotide-sugar biosynthetic process2.13E-03
59GO:0006164: purine nucleotide biosynthetic process2.13E-03
60GO:0016556: mRNA modification2.13E-03
61GO:0043572: plastid fission2.13E-03
62GO:2001141: regulation of RNA biosynthetic process2.13E-03
63GO:0009790: embryo development2.40E-03
64GO:0051322: anaphase2.86E-03
65GO:0015846: polyamine transport2.86E-03
66GO:0022622: root system development2.86E-03
67GO:0046656: folic acid biosynthetic process2.86E-03
68GO:0007020: microtubule nucleation2.86E-03
69GO:0071483: cellular response to blue light2.86E-03
70GO:0044205: 'de novo' UMP biosynthetic process2.86E-03
71GO:0010021: amylopectin biosynthetic process2.86E-03
72GO:0006730: one-carbon metabolic process3.07E-03
73GO:0071369: cellular response to ethylene stimulus3.35E-03
74GO:0016123: xanthophyll biosynthetic process3.66E-03
75GO:0010158: abaxial cell fate specification3.66E-03
76GO:0046785: microtubule polymerization3.66E-03
77GO:0009904: chloroplast accumulation movement3.66E-03
78GO:0010236: plastoquinone biosynthetic process3.66E-03
79GO:0045038: protein import into chloroplast thylakoid membrane3.66E-03
80GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.95E-03
81GO:0008033: tRNA processing4.27E-03
82GO:0009959: negative gravitropism4.52E-03
83GO:0006655: phosphatidylglycerol biosynthetic process4.52E-03
84GO:0016554: cytidine to uridine editing4.52E-03
85GO:0042793: transcription from plastid promoter4.52E-03
86GO:0032973: amino acid export4.52E-03
87GO:0009228: thiamine biosynthetic process4.52E-03
88GO:0080086: stamen filament development5.46E-03
89GO:0009648: photoperiodism5.46E-03
90GO:2000067: regulation of root morphogenesis5.46E-03
91GO:0019509: L-methionine salvage from methylthioadenosine5.46E-03
92GO:0042372: phylloquinone biosynthetic process5.46E-03
93GO:0042026: protein refolding5.46E-03
94GO:0034389: lipid particle organization5.46E-03
95GO:0006458: 'de novo' protein folding5.46E-03
96GO:0017148: negative regulation of translation5.46E-03
97GO:0009942: longitudinal axis specification5.46E-03
98GO:1901259: chloroplast rRNA processing5.46E-03
99GO:0046654: tetrahydrofolate biosynthetic process5.46E-03
100GO:0009903: chloroplast avoidance movement5.46E-03
101GO:0030488: tRNA methylation5.46E-03
102GO:0009630: gravitropism6.08E-03
103GO:0032880: regulation of protein localization6.45E-03
104GO:0048528: post-embryonic root development6.45E-03
105GO:0009772: photosynthetic electron transport in photosystem II6.45E-03
106GO:0043090: amino acid import6.45E-03
107GO:0010050: vegetative phase change6.45E-03
108GO:0048437: floral organ development6.45E-03
109GO:0010196: nonphotochemical quenching6.45E-03
110GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process6.45E-03
111GO:0071281: cellular response to iron ion6.48E-03
112GO:0009828: plant-type cell wall loosening6.90E-03
113GO:0048564: photosystem I assembly7.50E-03
114GO:0009850: auxin metabolic process7.50E-03
115GO:0042255: ribosome assembly7.50E-03
116GO:0009704: de-etiolation7.50E-03
117GO:0070413: trehalose metabolism in response to stress7.50E-03
118GO:2000070: regulation of response to water deprivation7.50E-03
119GO:0007275: multicellular organism development7.92E-03
120GO:0010027: thylakoid membrane organization8.25E-03
121GO:0009932: cell tip growth8.61E-03
122GO:0006002: fructose 6-phosphate metabolic process8.61E-03
123GO:0022900: electron transport chain8.61E-03
124GO:0006526: arginine biosynthetic process8.61E-03
125GO:0007389: pattern specification process8.61E-03
126GO:0009627: systemic acquired resistance9.22E-03
127GO:0006098: pentose-phosphate shunt9.78E-03
128GO:0080144: amino acid homeostasis9.78E-03
129GO:0019432: triglyceride biosynthetic process9.78E-03
130GO:0043067: regulation of programmed cell death1.10E-02
131GO:0042761: very long-chain fatty acid biosynthetic process1.10E-02
132GO:1900865: chloroplast RNA modification1.10E-02
133GO:0006949: syncytium formation1.23E-02
134GO:0006259: DNA metabolic process1.23E-02
135GO:0019538: protein metabolic process1.23E-02
136GO:0045036: protein targeting to chloroplast1.23E-02
137GO:0006413: translational initiation1.28E-02
138GO:0010015: root morphogenesis1.36E-02
139GO:0019684: photosynthesis, light reaction1.36E-02
140GO:0006265: DNA topological change1.36E-02
141GO:0009089: lysine biosynthetic process via diaminopimelate1.36E-02
142GO:1903507: negative regulation of nucleic acid-templated transcription1.36E-02
143GO:0006415: translational termination1.36E-02
144GO:0048229: gametophyte development1.36E-02
145GO:0009637: response to blue light1.37E-02
146GO:0016024: CDP-diacylglycerol biosynthetic process1.50E-02
147GO:0010582: floral meristem determinacy1.50E-02
148GO:0050826: response to freezing1.64E-02
149GO:0010075: regulation of meristem growth1.64E-02
150GO:0006094: gluconeogenesis1.64E-02
151GO:2000012: regulation of auxin polar transport1.64E-02
152GO:0010114: response to red light1.77E-02
153GO:0009934: regulation of meristem structural organization1.79E-02
154GO:0010207: photosystem II assembly1.79E-02
155GO:0042546: cell wall biogenesis1.84E-02
156GO:0010039: response to iron ion1.94E-02
157GO:0010030: positive regulation of seed germination1.94E-02
158GO:0006071: glycerol metabolic process2.09E-02
159GO:0010025: wax biosynthetic process2.09E-02
160GO:0005992: trehalose biosynthetic process2.25E-02
161GO:0009116: nucleoside metabolic process2.25E-02
162GO:0006364: rRNA processing2.39E-02
163GO:0016575: histone deacetylation2.42E-02
164GO:0043622: cortical microtubule organization2.42E-02
165GO:0009409: response to cold2.44E-02
166GO:0061077: chaperone-mediated protein folding2.59E-02
167GO:0016998: cell wall macromolecule catabolic process2.59E-02
168GO:0016226: iron-sulfur cluster assembly2.76E-02
169GO:2000022: regulation of jasmonic acid mediated signaling pathway2.76E-02
170GO:0007005: mitochondrion organization2.76E-02
171GO:0031348: negative regulation of defense response2.76E-02
172GO:0080092: regulation of pollen tube growth2.76E-02
173GO:0006096: glycolytic process2.83E-02
174GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.94E-02
175GO:0010091: trichome branching3.11E-02
176GO:0009306: protein secretion3.11E-02
177GO:0016117: carotenoid biosynthetic process3.30E-02
178GO:0008284: positive regulation of cell proliferation3.30E-02
179GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.31E-02
180GO:0048653: anther development3.49E-02
181GO:0042631: cellular response to water deprivation3.49E-02
182GO:0009958: positive gravitropism3.68E-02
183GO:0006662: glycerol ether metabolic process3.68E-02
184GO:0010197: polar nucleus fusion3.68E-02
185GO:0071555: cell wall organization3.75E-02
186GO:0007059: chromosome segregation3.87E-02
187GO:0055072: iron ion homeostasis4.07E-02
188GO:0019252: starch biosynthetic process4.07E-02
189GO:0000302: response to reactive oxygen species4.27E-02
190GO:0002229: defense response to oomycetes4.27E-02
191GO:0032502: developmental process4.48E-02
192GO:0010583: response to cyclopentenone4.48E-02
193GO:0016032: viral process4.48E-02
194GO:0010252: auxin homeostasis4.89E-02
195GO:0006508: proteolysis4.92E-02
RankGO TermAdjusted P value
1GO:0004358: glutamate N-acetyltransferase activity0.00E+00
2GO:0003937: IMP cyclohydrolase activity0.00E+00
3GO:0015231: 5-formyltetrahydrofolate transporter activity0.00E+00
4GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
5GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
6GO:0008115: sarcosine oxidase activity0.00E+00
7GO:0004643: phosphoribosylaminoimidazolecarboxamide formyltransferase activity0.00E+00
8GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
9GO:0019808: polyamine binding0.00E+00
10GO:0051721: protein phosphatase 2A binding0.00E+00
11GO:0042903: tubulin deacetylase activity0.00E+00
12GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
13GO:0046523: S-methyl-5-thioribose-1-phosphate isomerase activity0.00E+00
14GO:0043014: alpha-tubulin binding0.00E+00
15GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
16GO:0015350: methotrexate transporter activity0.00E+00
17GO:0004056: argininosuccinate lyase activity0.00E+00
18GO:0004326: tetrahydrofolylpolyglutamate synthase activity7.79E-06
19GO:0043621: protein self-association7.32E-05
20GO:0001053: plastid sigma factor activity1.03E-04
21GO:0016987: sigma factor activity1.03E-04
22GO:0004176: ATP-dependent peptidase activity2.89E-04
23GO:0050139: nicotinate-N-glucosyltransferase activity4.18E-04
24GO:0005227: calcium activated cation channel activity4.18E-04
25GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity4.18E-04
26GO:0004813: alanine-tRNA ligase activity4.18E-04
27GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity4.18E-04
28GO:0009977: proton motive force dependent protein transmembrane transporter activity9.05E-04
29GO:0003938: IMP dehydrogenase activity9.05E-04
30GO:0004047: aminomethyltransferase activity9.05E-04
31GO:0102083: 7,8-dihydromonapterin aldolase activity9.05E-04
32GO:0004817: cysteine-tRNA ligase activity9.05E-04
33GO:0019156: isoamylase activity9.05E-04
34GO:0004150: dihydroneopterin aldolase activity9.05E-04
35GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase9.05E-04
36GO:0001077: transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding9.05E-04
37GO:0008517: folic acid transporter activity9.05E-04
38GO:0010291: carotene beta-ring hydroxylase activity9.05E-04
39GO:0003723: RNA binding9.90E-04
40GO:0008237: metallopeptidase activity9.98E-04
41GO:0052692: raffinose alpha-galactosidase activity1.47E-03
42GO:0046524: sucrose-phosphate synthase activity1.47E-03
43GO:0070330: aromatase activity1.47E-03
44GO:0003913: DNA photolyase activity1.47E-03
45GO:0004557: alpha-galactosidase activity1.47E-03
46GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.94E-03
47GO:0048487: beta-tubulin binding2.13E-03
48GO:0016851: magnesium chelatase activity2.13E-03
49GO:0043023: ribosomal large subunit binding2.13E-03
50GO:0004045: aminoacyl-tRNA hydrolase activity2.86E-03
51GO:0009044: xylan 1,4-beta-xylosidase activity2.86E-03
52GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.86E-03
53GO:0046556: alpha-L-arabinofuranosidase activity2.86E-03
54GO:0004659: prenyltransferase activity2.86E-03
55GO:0018685: alkane 1-monooxygenase activity3.66E-03
56GO:0004040: amidase activity3.66E-03
57GO:0080030: methyl indole-3-acetate esterase activity4.52E-03
58GO:0004332: fructose-bisphosphate aldolase activity4.52E-03
59GO:0004526: ribonuclease P activity4.52E-03
60GO:0004556: alpha-amylase activity4.52E-03
61GO:0042578: phosphoric ester hydrolase activity4.52E-03
62GO:0008195: phosphatidate phosphatase activity5.46E-03
63GO:0016832: aldehyde-lyase activity5.46E-03
64GO:0003730: mRNA 3'-UTR binding5.46E-03
65GO:0004144: diacylglycerol O-acyltransferase activity5.46E-03
66GO:0004723: calcium-dependent protein serine/threonine phosphatase activity5.46E-03
67GO:0016762: xyloglucan:xyloglucosyl transferase activity5.69E-03
68GO:0009881: photoreceptor activity6.45E-03
69GO:0003872: 6-phosphofructokinase activity6.45E-03
70GO:0043022: ribosome binding7.50E-03
71GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)8.61E-03
72GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity8.61E-03
73GO:0005525: GTP binding9.16E-03
74GO:0019843: rRNA binding9.25E-03
75GO:0016798: hydrolase activity, acting on glycosyl bonds9.73E-03
76GO:0003747: translation release factor activity9.78E-03
77GO:0009672: auxin:proton symporter activity1.10E-02
78GO:0004222: metalloendopeptidase activity1.19E-02
79GO:0004805: trehalose-phosphatase activity1.23E-02
80GO:0044183: protein binding involved in protein folding1.36E-02
81GO:0005089: Rho guanyl-nucleotide exchange factor activity1.36E-02
82GO:0008559: xenobiotic-transporting ATPase activity1.36E-02
83GO:0003993: acid phosphatase activity1.43E-02
84GO:0000976: transcription regulatory region sequence-specific DNA binding1.50E-02
85GO:0000049: tRNA binding1.50E-02
86GO:0003924: GTPase activity1.51E-02
87GO:0004565: beta-galactosidase activity1.64E-02
88GO:0010329: auxin efflux transmembrane transporter activity1.64E-02
89GO:0004022: alcohol dehydrogenase (NAD) activity1.64E-02
90GO:0003743: translation initiation factor activity1.70E-02
91GO:0008083: growth factor activity1.79E-02
92GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.09E-02
93GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.09E-02
94GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.09E-02
95GO:0051536: iron-sulfur cluster binding2.25E-02
96GO:0004407: histone deacetylase activity2.25E-02
97GO:0003714: transcription corepressor activity2.25E-02
98GO:0003899: DNA-directed 5'-3' RNA polymerase activity2.39E-02
99GO:0015079: potassium ion transmembrane transporter activity2.42E-02
100GO:0003690: double-stranded DNA binding2.48E-02
101GO:0016788: hydrolase activity, acting on ester bonds2.48E-02
102GO:0033612: receptor serine/threonine kinase binding2.59E-02
103GO:0016887: ATPase activity2.90E-02
104GO:0050660: flavin adenine dinucleotide binding2.91E-02
105GO:0003727: single-stranded RNA binding3.11E-02
106GO:0047134: protein-disulfide reductase activity3.30E-02
107GO:0052689: carboxylic ester hydrolase activity3.59E-02
108GO:0008536: Ran GTPase binding3.68E-02
109GO:0004791: thioredoxin-disulfide reductase activity3.87E-02
110GO:0016853: isomerase activity3.87E-02
111GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.68E-02
112GO:0016740: transferase activity4.70E-02
113GO:0016791: phosphatase activity4.89E-02
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Gene type



Gene DE type