Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G34640

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0046040: IMP metabolic process0.00E+00
2GO:0070125: mitochondrial translational elongation0.00E+00
3GO:0006429: leucyl-tRNA aminoacylation0.00E+00
4GO:1905421: regulation of plant organ morphogenesis0.00E+00
5GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
6GO:0030155: regulation of cell adhesion0.00E+00
7GO:0046460: neutral lipid biosynthetic process0.00E+00
8GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
9GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
10GO:0044249: cellular biosynthetic process0.00E+00
11GO:0090071: negative regulation of ribosome biogenesis0.00E+00
12GO:0006167: AMP biosynthetic process0.00E+00
13GO:0042407: cristae formation0.00E+00
14GO:0090042: tubulin deacetylation0.00E+00
15GO:0006399: tRNA metabolic process0.00E+00
16GO:0009658: chloroplast organization1.20E-08
17GO:0009793: embryo development ending in seed dormancy9.97E-08
18GO:0009451: RNA modification3.48E-06
19GO:0042026: protein refolding1.12E-05
20GO:1901259: chloroplast rRNA processing1.12E-05
21GO:0006353: DNA-templated transcription, termination2.62E-05
22GO:0009657: plastid organization3.69E-05
23GO:0010239: chloroplast mRNA processing7.62E-05
24GO:0010020: chloroplast fission1.89E-04
25GO:0042793: transcription from plastid promoter2.88E-04
26GO:0006418: tRNA aminoacylation for protein translation3.43E-04
27GO:0006458: 'de novo' protein folding3.85E-04
28GO:1902458: positive regulation of stomatal opening4.87E-04
29GO:0000023: maltose metabolic process4.87E-04
30GO:0010729: positive regulation of hydrogen peroxide biosynthetic process4.87E-04
31GO:0006419: alanyl-tRNA aminoacylation4.87E-04
32GO:0000476: maturation of 4.5S rRNA4.87E-04
33GO:0000967: rRNA 5'-end processing4.87E-04
34GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process4.87E-04
35GO:0070509: calcium ion import4.87E-04
36GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process4.87E-04
37GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic4.87E-04
38GO:0043266: regulation of potassium ion transport4.87E-04
39GO:0006438: valyl-tRNA aminoacylation4.87E-04
40GO:0010063: positive regulation of trichoblast fate specification4.87E-04
41GO:0010480: microsporocyte differentiation4.87E-04
42GO:0042547: cell wall modification involved in multidimensional cell growth4.87E-04
43GO:0042371: vitamin K biosynthetic process4.87E-04
44GO:2000021: regulation of ion homeostasis4.87E-04
45GO:0006436: tryptophanyl-tRNA aminoacylation4.87E-04
46GO:0048437: floral organ development4.95E-04
47GO:0006400: tRNA modification4.95E-04
48GO:0009790: embryo development7.42E-04
49GO:0071482: cellular response to light stimulus7.51E-04
50GO:0000373: Group II intron splicing8.99E-04
51GO:1903426: regulation of reactive oxygen species biosynthetic process1.05E-03
52GO:0034470: ncRNA processing1.05E-03
53GO:0006420: arginyl-tRNA aminoacylation1.05E-03
54GO:0009629: response to gravity1.05E-03
55GO:1900871: chloroplast mRNA modification1.05E-03
56GO:0060359: response to ammonium ion1.05E-03
57GO:0048255: mRNA stabilization1.05E-03
58GO:1902326: positive regulation of chlorophyll biosynthetic process1.05E-03
59GO:0007154: cell communication1.05E-03
60GO:0018026: peptidyl-lysine monomethylation1.05E-03
61GO:0042325: regulation of phosphorylation1.05E-03
62GO:0015712: hexose phosphate transport1.05E-03
63GO:0006423: cysteinyl-tRNA aminoacylation1.05E-03
64GO:0009220: pyrimidine ribonucleotide biosynthetic process1.05E-03
65GO:0044208: 'de novo' AMP biosynthetic process1.05E-03
66GO:1904143: positive regulation of carotenoid biosynthetic process1.05E-03
67GO:0001682: tRNA 5'-leader removal1.05E-03
68GO:1900865: chloroplast RNA modification1.06E-03
69GO:0006352: DNA-templated transcription, initiation1.42E-03
70GO:0010027: thylakoid membrane organization1.54E-03
71GO:0045037: protein import into chloroplast stroma1.63E-03
72GO:0005977: glycogen metabolic process1.71E-03
73GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic1.71E-03
74GO:0048281: inflorescence morphogenesis1.71E-03
75GO:0006954: inflammatory response1.71E-03
76GO:0035436: triose phosphate transmembrane transport1.71E-03
77GO:0042780: tRNA 3'-end processing1.71E-03
78GO:0043157: response to cation stress1.71E-03
79GO:0071732: cellular response to nitric oxide2.34E-03
80GO:0090351: seedling development2.34E-03
81GO:0010071: root meristem specification2.48E-03
82GO:0051085: chaperone mediated protein folding requiring cofactor2.48E-03
83GO:0009152: purine ribonucleotide biosynthetic process2.48E-03
84GO:0010306: rhamnogalacturonan II biosynthetic process2.48E-03
85GO:0006164: purine nucleotide biosynthetic process2.48E-03
86GO:0010148: transpiration2.48E-03
87GO:0043572: plastid fission2.48E-03
88GO:2001141: regulation of RNA biosynthetic process2.48E-03
89GO:0016556: mRNA modification2.48E-03
90GO:0051781: positive regulation of cell division3.34E-03
91GO:0015846: polyamine transport3.34E-03
92GO:0071483: cellular response to blue light3.34E-03
93GO:0044205: 'de novo' UMP biosynthetic process3.34E-03
94GO:0015713: phosphoglycerate transport3.34E-03
95GO:0010021: amylopectin biosynthetic process3.34E-03
96GO:0061077: chaperone-mediated protein folding3.52E-03
97GO:0006730: one-carbon metabolic process3.86E-03
98GO:0007005: mitochondrion organization3.86E-03
99GO:0071369: cellular response to ethylene stimulus4.21E-03
100GO:0009107: lipoate biosynthetic process4.28E-03
101GO:0016123: xanthophyll biosynthetic process4.28E-03
102GO:0010158: abaxial cell fate specification4.28E-03
103GO:0032543: mitochondrial translation4.28E-03
104GO:0010236: plastoquinone biosynthetic process4.28E-03
105GO:0045038: protein import into chloroplast thylakoid membrane4.28E-03
106GO:0009959: negative gravitropism5.30E-03
107GO:0006655: phosphatidylglycerol biosynthetic process5.30E-03
108GO:0016554: cytidine to uridine editing5.30E-03
109GO:0032973: amino acid export5.30E-03
110GO:0050665: hydrogen peroxide biosynthetic process5.30E-03
111GO:0009228: thiamine biosynthetic process5.30E-03
112GO:0008033: tRNA processing5.37E-03
113GO:0009664: plant-type cell wall organization5.41E-03
114GO:0048868: pollen tube development5.79E-03
115GO:0019509: L-methionine salvage from methylthioadenosine6.40E-03
116GO:0042372: phylloquinone biosynthetic process6.40E-03
117GO:0017148: negative regulation of translation6.40E-03
118GO:0009942: longitudinal axis specification6.40E-03
119GO:0034389: lipid particle organization6.40E-03
120GO:0030488: tRNA methylation6.40E-03
121GO:0009854: oxidative photosynthetic carbon pathway6.40E-03
122GO:0048528: post-embryonic root development7.57E-03
123GO:0009772: photosynthetic electron transport in photosystem II7.57E-03
124GO:0043090: amino acid import7.57E-03
125GO:0070370: cellular heat acclimation7.57E-03
126GO:0010050: vegetative phase change7.57E-03
127GO:0010444: guard mother cell differentiation7.57E-03
128GO:0010196: nonphotochemical quenching7.57E-03
129GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process7.57E-03
130GO:0010103: stomatal complex morphogenesis7.57E-03
131GO:0032502: developmental process7.65E-03
132GO:0009630: gravitropism7.65E-03
133GO:0010583: response to cyclopentenone7.65E-03
134GO:0071281: cellular response to iron ion8.17E-03
135GO:0010252: auxin homeostasis8.69E-03
136GO:0009828: plant-type cell wall loosening8.69E-03
137GO:0009231: riboflavin biosynthetic process8.81E-03
138GO:0048564: photosystem I assembly8.81E-03
139GO:0001522: pseudouridine synthesis8.81E-03
140GO:0009850: auxin metabolic process8.81E-03
141GO:0042255: ribosome assembly8.81E-03
142GO:2000070: regulation of response to water deprivation8.81E-03
143GO:0070413: trehalose metabolism in response to stress8.81E-03
144GO:0031540: regulation of anthocyanin biosynthetic process8.81E-03
145GO:0009932: cell tip growth1.01E-02
146GO:0001558: regulation of cell growth1.01E-02
147GO:0006526: arginine biosynthetic process1.01E-02
148GO:0010204: defense response signaling pathway, resistance gene-independent1.01E-02
149GO:0007389: pattern specification process1.01E-02
150GO:0000902: cell morphogenesis1.15E-02
151GO:0080144: amino acid homeostasis1.15E-02
152GO:0006098: pentose-phosphate shunt1.15E-02
153GO:0019432: triglyceride biosynthetic process1.15E-02
154GO:0010411: xyloglucan metabolic process1.23E-02
155GO:0042761: very long-chain fatty acid biosynthetic process1.29E-02
156GO:0043067: regulation of programmed cell death1.29E-02
157GO:0009098: leucine biosynthetic process1.29E-02
158GO:0048481: plant ovule development1.36E-02
159GO:0006949: syncytium formation1.45E-02
160GO:0006259: DNA metabolic process1.45E-02
161GO:0006535: cysteine biosynthetic process from serine1.45E-02
162GO:0019538: protein metabolic process1.45E-02
163GO:0045036: protein targeting to chloroplast1.45E-02
164GO:0010015: root morphogenesis1.60E-02
165GO:0006265: DNA topological change1.60E-02
166GO:0009073: aromatic amino acid family biosynthetic process1.60E-02
167GO:0048229: gametophyte development1.60E-02
168GO:0006508: proteolysis1.65E-02
169GO:0009416: response to light stimulus1.69E-02
170GO:0005983: starch catabolic process1.76E-02
171GO:0016024: CDP-diacylglycerol biosynthetic process1.76E-02
172GO:0010582: floral meristem determinacy1.76E-02
173GO:0050826: response to freezing1.93E-02
174GO:0010075: regulation of meristem growth1.93E-02
175GO:0006094: gluconeogenesis1.93E-02
176GO:2000012: regulation of auxin polar transport1.93E-02
177GO:0010229: inflorescence development1.93E-02
178GO:0009934: regulation of meristem structural organization2.11E-02
179GO:0010207: photosystem II assembly2.11E-02
180GO:0048467: gynoecium development2.11E-02
181GO:0010114: response to red light2.23E-02
182GO:0070588: calcium ion transmembrane transport2.28E-02
183GO:0042546: cell wall biogenesis2.32E-02
184GO:0008380: RNA splicing2.34E-02
185GO:0006071: glycerol metabolic process2.47E-02
186GO:0010025: wax biosynthetic process2.47E-02
187GO:0042023: DNA endoreduplication2.47E-02
188GO:0005992: trehalose biosynthetic process2.66E-02
189GO:0019344: cysteine biosynthetic process2.66E-02
190GO:0009116: nucleoside metabolic process2.66E-02
191GO:0009944: polarity specification of adaxial/abaxial axis2.66E-02
192GO:0051302: regulation of cell division2.85E-02
193GO:0019953: sexual reproduction2.85E-02
194GO:0016575: histone deacetylation2.85E-02
195GO:0006364: rRNA processing3.01E-02
196GO:0016998: cell wall macromolecule catabolic process3.05E-02
197GO:0015992: proton transport3.05E-02
198GO:0009814: defense response, incompatible interaction3.25E-02
199GO:0016226: iron-sulfur cluster assembly3.25E-02
200GO:0031348: negative regulation of defense response3.25E-02
201GO:0080092: regulation of pollen tube growth3.25E-02
202GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.46E-02
203GO:0001944: vasculature development3.46E-02
204GO:0048367: shoot system development3.67E-02
205GO:0042127: regulation of cell proliferation3.67E-02
206GO:0009306: protein secretion3.67E-02
207GO:0048316: seed development3.67E-02
208GO:0009409: response to cold3.73E-02
209GO:0016117: carotenoid biosynthetic process3.89E-02
210GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.89E-02
211GO:0006606: protein import into nucleus4.11E-02
212GO:0048653: anther development4.11E-02
213GO:0080167: response to karrikin4.21E-02
214GO:0009741: response to brassinosteroid4.33E-02
215GO:0006662: glycerol ether metabolic process4.33E-02
216GO:0010305: leaf vascular tissue pattern formation4.33E-02
217GO:0010197: polar nucleus fusion4.33E-02
218GO:0009742: brassinosteroid mediated signaling pathway4.53E-02
219GO:0007059: chromosome segregation4.56E-02
220GO:0009646: response to absence of light4.56E-02
221GO:0048544: recognition of pollen4.56E-02
222GO:0006814: sodium ion transport4.56E-02
223GO:0009851: auxin biosynthetic process4.80E-02
224GO:0019252: starch biosynthetic process4.80E-02
225GO:0008654: phospholipid biosynthetic process4.80E-02
226GO:0015979: photosynthesis4.95E-02
RankGO TermAdjusted P value
1GO:0015267: channel activity0.00E+00
2GO:0004358: glutamate N-acetyltransferase activity0.00E+00
3GO:0004019: adenylosuccinate synthase activity0.00E+00
4GO:0003937: IMP cyclohydrolase activity0.00E+00
5GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
6GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
7GO:0005363: maltose transmembrane transporter activity0.00E+00
8GO:0019808: polyamine binding0.00E+00
9GO:0046523: S-methyl-5-thioribose-1-phosphate isomerase activity0.00E+00
10GO:0043014: alpha-tubulin binding0.00E+00
11GO:0004643: phosphoribosylaminoimidazolecarboxamide formyltransferase activity0.00E+00
12GO:0004561: alpha-N-acetylglucosaminidase activity0.00E+00
13GO:0051721: protein phosphatase 2A binding0.00E+00
14GO:0004823: leucine-tRNA ligase activity0.00E+00
15GO:0042903: tubulin deacetylase activity0.00E+00
16GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
17GO:0004056: argininosuccinate lyase activity0.00E+00
18GO:0004519: endonuclease activity3.56E-06
19GO:0003723: RNA binding7.45E-06
20GO:0004326: tetrahydrofolylpolyglutamate synthase activity1.04E-05
21GO:0004176: ATP-dependent peptidase activity2.71E-05
22GO:0044183: protein binding involved in protein folding1.06E-04
23GO:0043621: protein self-association1.20E-04
24GO:0001053: plastid sigma factor activity1.32E-04
25GO:0016987: sigma factor activity1.32E-04
26GO:0008237: metallopeptidase activity1.71E-04
27GO:0005227: calcium activated cation channel activity4.87E-04
28GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity4.87E-04
29GO:0004813: alanine-tRNA ligase activity4.87E-04
30GO:0008835: diaminohydroxyphosphoribosylaminopyrimidine deaminase activity4.87E-04
31GO:0004832: valine-tRNA ligase activity4.87E-04
32GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.87E-04
33GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity4.87E-04
34GO:0004830: tryptophan-tRNA ligase activity4.87E-04
35GO:0019843: rRNA binding5.63E-04
36GO:0004812: aminoacyl-tRNA ligase activity6.09E-04
37GO:0003852: 2-isopropylmalate synthase activity1.05E-03
38GO:0004814: arginine-tRNA ligase activity1.05E-03
39GO:0009977: proton motive force dependent protein transmembrane transporter activity1.05E-03
40GO:0016415: octanoyltransferase activity1.05E-03
41GO:0004047: aminomethyltransferase activity1.05E-03
42GO:0004817: cysteine-tRNA ligase activity1.05E-03
43GO:0019156: isoamylase activity1.05E-03
44GO:0010291: carotene beta-ring hydroxylase activity1.05E-03
45GO:0017118: lipoyltransferase activity1.05E-03
46GO:0071917: triose-phosphate transmembrane transporter activity1.71E-03
47GO:0046524: sucrose-phosphate synthase activity1.71E-03
48GO:0070330: aromatase activity1.71E-03
49GO:0002161: aminoacyl-tRNA editing activity1.71E-03
50GO:0042781: 3'-tRNA processing endoribonuclease activity1.71E-03
51GO:0004222: metalloendopeptidase activity2.45E-03
52GO:0008508: bile acid:sodium symporter activity2.48E-03
53GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity2.48E-03
54GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity2.48E-03
55GO:0009678: hydrogen-translocating pyrophosphatase activity2.48E-03
56GO:0019201: nucleotide kinase activity2.48E-03
57GO:0048487: beta-tubulin binding2.48E-03
58GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity2.48E-03
59GO:0016851: magnesium chelatase activity2.48E-03
60GO:0043023: ribosomal large subunit binding2.48E-03
61GO:0004045: aminoacyl-tRNA hydrolase activity3.34E-03
62GO:0019199: transmembrane receptor protein kinase activity3.34E-03
63GO:0042277: peptide binding3.34E-03
64GO:0008891: glycolate oxidase activity3.34E-03
65GO:0015120: phosphoglycerate transmembrane transporter activity3.34E-03
66GO:0004659: prenyltransferase activity3.34E-03
67GO:0016279: protein-lysine N-methyltransferase activity3.34E-03
68GO:0016887: ATPase activity4.16E-03
69GO:0045300: acyl-[acyl-carrier-protein] desaturase activity4.28E-03
70GO:0005275: amine transmembrane transporter activity4.28E-03
71GO:0018685: alkane 1-monooxygenase activity4.28E-03
72GO:0016773: phosphotransferase activity, alcohol group as acceptor4.28E-03
73GO:0070696: transmembrane receptor protein serine/threonine kinase binding4.28E-03
74GO:0005525: GTP binding5.00E-03
75GO:0004605: phosphatidate cytidylyltransferase activity5.30E-03
76GO:0080030: methyl indole-3-acetate esterase activity5.30E-03
77GO:0004332: fructose-bisphosphate aldolase activity5.30E-03
78GO:0004526: ribonuclease P activity5.30E-03
79GO:0004556: alpha-amylase activity5.30E-03
80GO:0004124: cysteine synthase activity6.40E-03
81GO:0008195: phosphatidate phosphatase activity6.40E-03
82GO:0004017: adenylate kinase activity6.40E-03
83GO:0004144: diacylglycerol O-acyltransferase activity6.40E-03
84GO:0016762: xyloglucan:xyloglucosyl transferase activity7.16E-03
85GO:0004427: inorganic diphosphatase activity7.57E-03
86GO:0043022: ribosome binding8.81E-03
87GO:0051082: unfolded protein binding9.30E-03
88GO:0016597: amino acid binding9.81E-03
89GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)1.01E-02
90GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.01E-02
91GO:0016798: hydrolase activity, acting on glycosyl bonds1.23E-02
92GO:0009672: auxin:proton symporter activity1.29E-02
93GO:0016829: lyase activity1.37E-02
94GO:0004805: trehalose-phosphatase activity1.45E-02
95GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.58E-02
96GO:0005089: Rho guanyl-nucleotide exchange factor activity1.60E-02
97GO:0003746: translation elongation factor activity1.73E-02
98GO:0000049: tRNA binding1.76E-02
99GO:0003993: acid phosphatase activity1.81E-02
100GO:0005262: calcium channel activity1.93E-02
101GO:0019888: protein phosphatase regulator activity1.93E-02
102GO:0009982: pseudouridine synthase activity1.93E-02
103GO:0004565: beta-galactosidase activity1.93E-02
104GO:0010329: auxin efflux transmembrane transporter activity1.93E-02
105GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.47E-02
106GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.47E-02
107GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.47E-02
108GO:0051536: iron-sulfur cluster binding2.66E-02
109GO:0004407: histone deacetylase activity2.66E-02
110GO:0015079: potassium ion transmembrane transporter activity2.85E-02
111GO:0003899: DNA-directed 5'-3' RNA polymerase activity3.01E-02
112GO:0008408: 3'-5' exonuclease activity3.05E-02
113GO:0033612: receptor serine/threonine kinase binding3.05E-02
114GO:0003690: double-stranded DNA binding3.12E-02
115GO:0005524: ATP binding3.13E-02
116GO:0015171: amino acid transmembrane transporter activity3.33E-02
117GO:0030570: pectate lyase activity3.46E-02
118GO:0003727: single-stranded RNA binding3.67E-02
119GO:0047134: protein-disulfide reductase activity3.89E-02
120GO:0008536: Ran GTPase binding4.33E-02
121GO:0004527: exonuclease activity4.33E-02
122GO:0004791: thioredoxin-disulfide reductase activity4.56E-02
123GO:0016853: isomerase activity4.56E-02
124GO:0005355: glucose transmembrane transporter activity4.56E-02
125GO:0010181: FMN binding4.56E-02
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Gene type



Gene DE type