Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G33255

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042821: pyridoxal biosynthetic process0.00E+00
2GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
3GO:1903508: positive regulation of nucleic acid-templated transcription0.00E+00
4GO:0071474: cellular hyperosmotic response0.00E+00
5GO:0018023: peptidyl-lysine trimethylation0.00E+00
6GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
7GO:0034337: RNA folding0.00E+00
8GO:0006982: response to lipid hydroperoxide0.00E+00
9GO:2000505: regulation of energy homeostasis0.00E+00
10GO:0002184: cytoplasmic translational termination0.00E+00
11GO:0010335: response to non-ionic osmotic stress0.00E+00
12GO:1901918: negative regulation of exoribonuclease activity0.00E+00
13GO:0016553: base conversion or substitution editing0.00E+00
14GO:0090279: regulation of calcium ion import0.00E+00
15GO:0090470: shoot organ boundary specification0.00E+00
16GO:0042820: vitamin B6 catabolic process0.00E+00
17GO:0015995: chlorophyll biosynthetic process1.65E-10
18GO:0055114: oxidation-reduction process5.16E-06
19GO:0010207: photosystem II assembly1.34E-05
20GO:0015979: photosynthesis1.53E-05
21GO:0010027: thylakoid membrane organization2.84E-05
22GO:0071482: cellular response to light stimulus5.09E-05
23GO:2001141: regulation of RNA biosynthetic process9.62E-05
24GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly9.62E-05
25GO:0006021: inositol biosynthetic process1.66E-04
26GO:0009658: chloroplast organization1.81E-04
27GO:0009904: chloroplast accumulation movement2.52E-04
28GO:0046855: inositol phosphate dephosphorylation3.54E-04
29GO:0009903: chloroplast avoidance movement4.72E-04
30GO:1904966: positive regulation of vitamin E biosynthetic process5.57E-04
31GO:0043953: protein transport by the Tat complex5.57E-04
32GO:0000481: maturation of 5S rRNA5.57E-04
33GO:0015801: aromatic amino acid transport5.57E-04
34GO:1904964: positive regulation of phytol biosynthetic process5.57E-04
35GO:0010426: DNA methylation on cytosine within a CHH sequence5.57E-04
36GO:0065002: intracellular protein transmembrane transport5.57E-04
37GO:0043686: co-translational protein modification5.57E-04
38GO:0043087: regulation of GTPase activity5.57E-04
39GO:0071461: cellular response to redox state5.57E-04
40GO:0046167: glycerol-3-phosphate biosynthetic process5.57E-04
41GO:1902458: positive regulation of stomatal opening5.57E-04
42GO:0048363: mucilage pectin metabolic process5.57E-04
43GO:0009443: pyridoxal 5'-phosphate salvage5.57E-04
44GO:0010362: negative regulation of anion channel activity by blue light5.57E-04
45GO:0015969: guanosine tetraphosphate metabolic process5.57E-04
46GO:1902478: negative regulation of defense response to bacterium, incompatible interaction5.57E-04
47GO:0031426: polycistronic mRNA processing5.57E-04
48GO:0043489: RNA stabilization5.57E-04
49GO:0015671: oxygen transport5.57E-04
50GO:0016559: peroxisome fission7.52E-04
51GO:0048564: photosystem I assembly7.52E-04
52GO:0006783: heme biosynthetic process1.09E-03
53GO:0018026: peptidyl-lysine monomethylation1.20E-03
54GO:0000256: allantoin catabolic process1.20E-03
55GO:0071668: plant-type cell wall assembly1.20E-03
56GO:0006435: threonyl-tRNA aminoacylation1.20E-03
57GO:0006650: glycerophospholipid metabolic process1.20E-03
58GO:0080183: response to photooxidative stress1.20E-03
59GO:0010155: regulation of proton transport1.20E-03
60GO:0006729: tetrahydrobiopterin biosynthetic process1.20E-03
61GO:1903426: regulation of reactive oxygen species biosynthetic process1.20E-03
62GO:0030388: fructose 1,6-bisphosphate metabolic process1.20E-03
63GO:0051262: protein tetramerization1.20E-03
64GO:0080005: photosystem stoichiometry adjustment1.20E-03
65GO:0042819: vitamin B6 biosynthetic process1.20E-03
66GO:1902326: positive regulation of chlorophyll biosynthetic process1.20E-03
67GO:0006352: DNA-templated transcription, initiation1.74E-03
68GO:0009089: lysine biosynthetic process via diaminopimelate1.74E-03
69GO:0009773: photosynthetic electron transport in photosystem I1.74E-03
70GO:0044375: regulation of peroxisome size1.97E-03
71GO:0005977: glycogen metabolic process1.97E-03
72GO:0046621: negative regulation of organ growth1.97E-03
73GO:0000913: preprophase band assembly1.97E-03
74GO:0031022: nuclear migration along microfilament1.97E-03
75GO:0010136: ureide catabolic process1.97E-03
76GO:0006000: fructose metabolic process1.97E-03
77GO:0034051: negative regulation of plant-type hypersensitive response1.97E-03
78GO:0046168: glycerol-3-phosphate catabolic process1.97E-03
79GO:0016024: CDP-diacylglycerol biosynthetic process2.00E-03
80GO:0006790: sulfur compound metabolic process2.00E-03
81GO:0009735: response to cytokinin2.19E-03
82GO:0006094: gluconeogenesis2.27E-03
83GO:0006145: purine nucleobase catabolic process2.86E-03
84GO:0042823: pyridoxal phosphate biosynthetic process2.86E-03
85GO:0010371: regulation of gibberellin biosynthetic process2.86E-03
86GO:0006020: inositol metabolic process2.86E-03
87GO:0009102: biotin biosynthetic process2.86E-03
88GO:0009152: purine ribonucleotide biosynthetic process2.86E-03
89GO:0046653: tetrahydrofolate metabolic process2.86E-03
90GO:0010239: chloroplast mRNA processing2.86E-03
91GO:0009052: pentose-phosphate shunt, non-oxidative branch2.86E-03
92GO:0033014: tetrapyrrole biosynthetic process2.86E-03
93GO:0008615: pyridoxine biosynthetic process2.86E-03
94GO:0010731: protein glutathionylation2.86E-03
95GO:0006072: glycerol-3-phosphate metabolic process2.86E-03
96GO:1901332: negative regulation of lateral root development2.86E-03
97GO:0046854: phosphatidylinositol phosphorylation2.88E-03
98GO:0016051: carbohydrate biosynthetic process3.81E-03
99GO:0010021: amylopectin biosynthetic process3.85E-03
100GO:0009765: photosynthesis, light harvesting3.85E-03
101GO:2000306: positive regulation of photomorphogenesis3.85E-03
102GO:0015994: chlorophyll metabolic process3.85E-03
103GO:0010600: regulation of auxin biosynthetic process3.85E-03
104GO:0006631: fatty acid metabolic process4.74E-03
105GO:0006564: L-serine biosynthetic process4.94E-03
106GO:0045038: protein import into chloroplast thylakoid membrane4.94E-03
107GO:0016120: carotene biosynthetic process4.94E-03
108GO:0031365: N-terminal protein amino acid modification4.94E-03
109GO:0009107: lipoate biosynthetic process4.94E-03
110GO:0016123: xanthophyll biosynthetic process4.94E-03
111GO:0000304: response to singlet oxygen4.94E-03
112GO:0080110: sporopollenin biosynthetic process4.94E-03
113GO:0006465: signal peptide processing4.94E-03
114GO:0006412: translation5.51E-03
115GO:0042549: photosystem II stabilization6.12E-03
116GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway6.12E-03
117GO:0006655: phosphatidylglycerol biosynthetic process6.12E-03
118GO:0010190: cytochrome b6f complex assembly6.12E-03
119GO:0045962: positive regulation of development, heterochronic6.12E-03
120GO:0009920: cell plate formation involved in plant-type cell wall biogenesis6.12E-03
121GO:0006520: cellular amino acid metabolic process7.13E-03
122GO:0045489: pectin biosynthetic process7.13E-03
123GO:0030488: tRNA methylation7.40E-03
124GO:1901259: chloroplast rRNA processing7.40E-03
125GO:0010244: response to low fluence blue light stimulus by blue low-fluence system7.40E-03
126GO:0019252: starch biosynthetic process8.23E-03
127GO:0009791: post-embryonic development8.23E-03
128GO:0010161: red light signaling pathway8.76E-03
129GO:0048437: floral organ development8.76E-03
130GO:0009704: de-etiolation1.02E-02
131GO:0032508: DNA duplex unwinding1.02E-02
132GO:2000070: regulation of response to water deprivation1.02E-02
133GO:0042255: ribosome assembly1.02E-02
134GO:0006353: DNA-templated transcription, termination1.02E-02
135GO:0007155: cell adhesion1.02E-02
136GO:0010928: regulation of auxin mediated signaling pathway1.02E-02
137GO:0006526: arginine biosynthetic process1.17E-02
138GO:0032544: plastid translation1.17E-02
139GO:0009657: plastid organization1.17E-02
140GO:0006002: fructose 6-phosphate metabolic process1.17E-02
141GO:0022900: electron transport chain1.17E-02
142GO:0015996: chlorophyll catabolic process1.17E-02
143GO:0007186: G-protein coupled receptor signaling pathway1.17E-02
144GO:0005975: carbohydrate metabolic process1.21E-02
145GO:0042254: ribosome biogenesis1.21E-02
146GO:0006396: RNA processing1.26E-02
147GO:0019432: triglyceride biosynthetic process1.33E-02
148GO:0048507: meristem development1.33E-02
149GO:0051865: protein autoubiquitination1.33E-02
150GO:0090305: nucleic acid phosphodiester bond hydrolysis1.33E-02
151GO:0010206: photosystem II repair1.33E-02
152GO:0048354: mucilage biosynthetic process involved in seed coat development1.50E-02
153GO:0009638: phototropism1.50E-02
154GO:0006779: porphyrin-containing compound biosynthetic process1.50E-02
155GO:0006782: protoporphyrinogen IX biosynthetic process1.68E-02
156GO:0018298: protein-chromophore linkage1.68E-02
157GO:0043069: negative regulation of programmed cell death1.68E-02
158GO:0006535: cysteine biosynthetic process from serine1.68E-02
159GO:0009817: defense response to fungus, incompatible interaction1.68E-02
160GO:0006811: ion transport1.85E-02
161GO:0008285: negative regulation of cell proliferation1.86E-02
162GO:0019684: photosynthesis, light reaction1.86E-02
163GO:0007568: aging1.94E-02
164GO:0015031: protein transport2.02E-02
165GO:0045037: protein import into chloroplast stroma2.05E-02
166GO:0009637: response to blue light2.13E-02
167GO:0006633: fatty acid biosynthetic process2.16E-02
168GO:0009785: blue light signaling pathway2.24E-02
169GO:0018107: peptidyl-threonine phosphorylation2.24E-02
170GO:0009718: anthocyanin-containing compound biosynthetic process2.24E-02
171GO:0009725: response to hormone2.24E-02
172GO:0009767: photosynthetic electron transport chain2.24E-02
173GO:0005986: sucrose biosynthetic process2.24E-02
174GO:0030048: actin filament-based movement2.24E-02
175GO:0010020: chloroplast fission2.44E-02
176GO:0019253: reductive pentose-phosphate cycle2.44E-02
177GO:0009266: response to temperature stimulus2.44E-02
178GO:0034605: cellular response to heat2.44E-02
179GO:0010143: cutin biosynthetic process2.44E-02
180GO:0007031: peroxisome organization2.65E-02
181GO:0019853: L-ascorbic acid biosynthetic process2.65E-02
182GO:0032259: methylation2.72E-02
183GO:0006636: unsaturated fatty acid biosynthetic process2.86E-02
184GO:0006289: nucleotide-excision repair3.08E-02
185GO:0019344: cysteine biosynthetic process3.08E-02
186GO:0009636: response to toxic substance3.09E-02
187GO:0009768: photosynthesis, light harvesting in photosystem I3.31E-02
188GO:0007017: microtubule-based process3.31E-02
189GO:0010073: meristem maintenance3.31E-02
190GO:0008299: isoprenoid biosynthetic process3.31E-02
191GO:0042538: hyperosmotic salinity response3.45E-02
192GO:0003333: amino acid transmembrane transport3.54E-02
193GO:0048511: rhythmic process3.54E-02
194GO:0010431: seed maturation3.54E-02
195GO:0061077: chaperone-mediated protein folding3.54E-02
196GO:0031408: oxylipin biosynthetic process3.54E-02
197GO:0006306: DNA methylation3.54E-02
198GO:0035428: hexose transmembrane transport3.78E-02
199GO:0080092: regulation of pollen tube growth3.78E-02
200GO:0016226: iron-sulfur cluster assembly3.78E-02
201GO:0010017: red or far-red light signaling pathway3.78E-02
202GO:0010227: floral organ abscission4.02E-02
203GO:0009306: protein secretion4.26E-02
204GO:0019722: calcium-mediated signaling4.26E-02
205GO:0009561: megagametogenesis4.26E-02
206GO:0006817: phosphate ion transport4.26E-02
207GO:0010584: pollen exine formation4.26E-02
208GO:0006096: glycolytic process4.37E-02
209GO:0016117: carotenoid biosynthetic process4.51E-02
210GO:0000271: polysaccharide biosynthetic process4.77E-02
211GO:0042335: cuticle development4.77E-02
RankGO TermAdjusted P value
1GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
2GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
3GO:0045435: lycopene epsilon cyclase activity0.00E+00
4GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity0.00E+00
5GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
6GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
7GO:0036033: mediator complex binding0.00E+00
8GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity0.00E+00
9GO:0004076: biotin synthase activity0.00E+00
10GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
11GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
12GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
13GO:0009673: low-affinity phosphate transmembrane transporter activity0.00E+00
14GO:0050613: delta14-sterol reductase activity0.00E+00
15GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
16GO:0070402: NADPH binding1.65E-07
17GO:0016491: oxidoreductase activity1.73E-06
18GO:0019843: rRNA binding2.04E-06
19GO:0052833: inositol monophosphate 4-phosphatase activity1.35E-05
20GO:0052832: inositol monophosphate 3-phosphatase activity1.35E-05
21GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.35E-05
22GO:0008934: inositol monophosphate 1-phosphatase activity1.35E-05
23GO:0016851: magnesium chelatase activity9.62E-05
24GO:0001053: plastid sigma factor activity1.66E-04
25GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.66E-04
26GO:0016987: sigma factor activity1.66E-04
27GO:0000293: ferric-chelate reductase activity3.54E-04
28GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.54E-04
29GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.72E-04
30GO:0005080: protein kinase C binding5.57E-04
31GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity5.57E-04
32GO:0004325: ferrochelatase activity5.57E-04
33GO:0004853: uroporphyrinogen decarboxylase activity5.57E-04
34GO:0042586: peptide deformylase activity5.57E-04
35GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity5.57E-04
36GO:0010347: L-galactose-1-phosphate phosphatase activity5.57E-04
37GO:0005344: oxygen transporter activity5.57E-04
38GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity5.57E-04
39GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity5.57E-04
40GO:0005227: calcium activated cation channel activity5.57E-04
41GO:0004856: xylulokinase activity5.57E-04
42GO:0009496: plastoquinol--plastocyanin reductase activity5.57E-04
43GO:0080132: fatty acid alpha-hydroxylase activity5.57E-04
44GO:0004033: aldo-keto reductase (NADP) activity7.52E-04
45GO:0008728: GTP diphosphokinase activity1.20E-03
46GO:0036381: pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity1.20E-03
47GO:0050017: L-3-cyanoalanine synthase activity1.20E-03
48GO:0042389: omega-3 fatty acid desaturase activity1.20E-03
49GO:0009977: proton motive force dependent protein transmembrane transporter activity1.20E-03
50GO:0004617: phosphoglycerate dehydrogenase activity1.20E-03
51GO:0015173: aromatic amino acid transmembrane transporter activity1.20E-03
52GO:0018708: thiol S-methyltransferase activity1.20E-03
53GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity1.20E-03
54GO:0016630: protochlorophyllide reductase activity1.20E-03
55GO:0004081: bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity1.20E-03
56GO:0004829: threonine-tRNA ligase activity1.20E-03
57GO:0034432: bis(5'-adenosyl)-pentaphosphatase activity1.20E-03
58GO:0019172: glyoxalase III activity1.20E-03
59GO:0019156: isoamylase activity1.20E-03
60GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.22E-03
61GO:0048038: quinone binding1.25E-03
62GO:0003735: structural constituent of ribosome1.55E-03
63GO:0004751: ribose-5-phosphate isomerase activity1.97E-03
64GO:0030267: glyoxylate reductase (NADP) activity1.97E-03
65GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.97E-03
66GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity1.97E-03
67GO:0008864: formyltetrahydrofolate deformylase activity1.97E-03
68GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.97E-03
69GO:0005504: fatty acid binding1.97E-03
70GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.97E-03
71GO:0016992: lipoate synthase activity1.97E-03
72GO:0008266: poly(U) RNA binding2.56E-03
73GO:0009882: blue light photoreceptor activity2.86E-03
74GO:0043023: ribosomal large subunit binding2.86E-03
75GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.86E-03
76GO:0048027: mRNA 5'-UTR binding2.86E-03
77GO:0005528: FK506 binding3.56E-03
78GO:0043495: protein anchor3.85E-03
79GO:0016279: protein-lysine N-methyltransferase activity3.85E-03
80GO:0070628: proteasome binding3.85E-03
81GO:0045430: chalcone isomerase activity3.85E-03
82GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity4.74E-03
83GO:0016773: phosphotransferase activity, alcohol group as acceptor4.94E-03
84GO:0003959: NADPH dehydrogenase activity4.94E-03
85GO:0005275: amine transmembrane transporter activity4.94E-03
86GO:0003727: single-stranded RNA binding5.63E-03
87GO:0051537: 2 iron, 2 sulfur cluster binding5.83E-03
88GO:0004130: cytochrome-c peroxidase activity6.12E-03
89GO:0035673: oligopeptide transmembrane transporter activity6.12E-03
90GO:0042578: phosphoric ester hydrolase activity6.12E-03
91GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity6.12E-03
92GO:0004332: fructose-bisphosphate aldolase activity6.12E-03
93GO:0031593: polyubiquitin binding6.12E-03
94GO:0004556: alpha-amylase activity6.12E-03
95GO:0004462: lactoylglutathione lyase activity6.12E-03
96GO:0051287: NAD binding6.73E-03
97GO:0005261: cation channel activity7.40E-03
98GO:0003886: DNA (cytosine-5-)-methyltransferase activity7.40E-03
99GO:0009927: histidine phosphotransfer kinase activity7.40E-03
100GO:0004124: cysteine synthase activity7.40E-03
101GO:0051920: peroxiredoxin activity7.40E-03
102GO:0004017: adenylate kinase activity7.40E-03
103GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity7.40E-03
104GO:0042802: identical protein binding8.70E-03
105GO:0019899: enzyme binding8.76E-03
106GO:0016209: antioxidant activity1.02E-02
107GO:0008173: RNA methyltransferase activity1.17E-02
108GO:0004601: peroxidase activity1.17E-02
109GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water1.17E-02
110GO:0008135: translation factor activity, RNA binding1.17E-02
111GO:0071949: FAD binding1.33E-02
112GO:0016168: chlorophyll binding1.36E-02
113GO:0003824: catalytic activity1.49E-02
114GO:0030955: potassium ion binding1.50E-02
115GO:0004743: pyruvate kinase activity1.50E-02
116GO:0005089: Rho guanyl-nucleotide exchange factor activity1.86E-02
117GO:0015198: oligopeptide transporter activity2.05E-02
118GO:0005525: GTP binding2.13E-02
119GO:0003746: translation elongation factor activity2.13E-02
120GO:0003993: acid phosphatase activity2.23E-02
121GO:0005315: inorganic phosphate transmembrane transporter activity2.24E-02
122GO:0031072: heat shock protein binding2.24E-02
123GO:0000155: phosphorelay sensor kinase activity2.24E-02
124GO:0004565: beta-galactosidase activity2.24E-02
125GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.44E-02
126GO:0003774: motor activity2.44E-02
127GO:0031624: ubiquitin conjugating enzyme binding2.44E-02
128GO:0004364: glutathione transferase activity2.64E-02
129GO:0003729: mRNA binding2.80E-02
130GO:0031409: pigment binding2.86E-02
131GO:0003924: GTPase activity2.90E-02
132GO:0035091: phosphatidylinositol binding2.98E-02
133GO:0051536: iron-sulfur cluster binding3.08E-02
134GO:0043130: ubiquitin binding3.08E-02
135GO:0003723: RNA binding3.66E-02
136GO:0003899: DNA-directed 5'-3' RNA polymerase activity3.70E-02
137GO:0003690: double-stranded DNA binding3.83E-02
138GO:0022891: substrate-specific transmembrane transporter activity4.02E-02
139GO:0030570: pectate lyase activity4.02E-02
140GO:0016788: hydrolase activity, acting on ester bonds4.28E-02
141GO:0005102: receptor binding4.51E-02
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Gene type



Gene DE type