GO Enrichment Analysis of Co-expressed Genes with
AT2G31890
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010059: positive regulation of atrichoblast fate specification | 0.00E+00 |
| 2 | GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) | 0.00E+00 |
| 3 | GO:0090615: mitochondrial mRNA processing | 0.00E+00 |
| 4 | GO:0009451: RNA modification | 4.12E-10 |
| 5 | GO:0009658: chloroplast organization | 5.74E-08 |
| 6 | GO:0042793: transcription from plastid promoter | 4.85E-07 |
| 7 | GO:1900865: chloroplast RNA modification | 6.02E-06 |
| 8 | GO:0010239: chloroplast mRNA processing | 1.30E-05 |
| 9 | GO:0009942: longitudinal axis specification | 8.05E-05 |
| 10 | GO:0009657: plastid organization | 1.72E-04 |
| 11 | GO:0010063: positive regulation of trichoblast fate specification | 1.77E-04 |
| 12 | GO:0006436: tryptophanyl-tRNA aminoacylation | 1.77E-04 |
| 13 | GO:0046104: thymidine metabolic process | 1.77E-04 |
| 14 | GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic | 1.77E-04 |
| 15 | GO:0006259: DNA metabolic process | 2.95E-04 |
| 16 | GO:0045037: protein import into chloroplast stroma | 3.93E-04 |
| 17 | GO:1900871: chloroplast mRNA modification | 4.01E-04 |
| 18 | GO:0010541: acropetal auxin transport | 4.01E-04 |
| 19 | GO:0018026: peptidyl-lysine monomethylation | 4.01E-04 |
| 20 | GO:0009662: etioplast organization | 4.01E-04 |
| 21 | GO:0009220: pyrimidine ribonucleotide biosynthetic process | 4.01E-04 |
| 22 | GO:1904143: positive regulation of carotenoid biosynthetic process | 4.01E-04 |
| 23 | GO:0006420: arginyl-tRNA aminoacylation | 4.01E-04 |
| 24 | GO:0048255: mRNA stabilization | 4.01E-04 |
| 25 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 4.01E-04 |
| 26 | GO:0009793: embryo development ending in seed dormancy | 5.72E-04 |
| 27 | GO:0006518: peptide metabolic process | 6.55E-04 |
| 28 | GO:0042780: tRNA 3'-end processing | 6.55E-04 |
| 29 | GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic | 6.55E-04 |
| 30 | GO:0045910: negative regulation of DNA recombination | 6.55E-04 |
| 31 | GO:0010371: regulation of gibberellin biosynthetic process | 9.34E-04 |
| 32 | GO:1902476: chloride transmembrane transport | 9.34E-04 |
| 33 | GO:0010071: root meristem specification | 9.34E-04 |
| 34 | GO:0051513: regulation of monopolar cell growth | 9.34E-04 |
| 35 | GO:0016556: mRNA modification | 9.34E-04 |
| 36 | GO:0044205: 'de novo' UMP biosynthetic process | 1.24E-03 |
| 37 | GO:0006479: protein methylation | 1.24E-03 |
| 38 | GO:1900864: mitochondrial RNA modification | 1.24E-03 |
| 39 | GO:0006221: pyrimidine nucleotide biosynthetic process | 1.24E-03 |
| 40 | GO:0048497: maintenance of floral organ identity | 1.57E-03 |
| 41 | GO:0009616: virus induced gene silencing | 1.57E-03 |
| 42 | GO:0010583: response to cyclopentenone | 1.76E-03 |
| 43 | GO:0009913: epidermal cell differentiation | 1.94E-03 |
| 44 | GO:0060918: auxin transport | 1.94E-03 |
| 45 | GO:0006014: D-ribose metabolic process | 1.94E-03 |
| 46 | GO:0042549: photosystem II stabilization | 1.94E-03 |
| 47 | GO:0035194: posttranscriptional gene silencing by RNA | 1.94E-03 |
| 48 | GO:0016554: cytidine to uridine editing | 1.94E-03 |
| 49 | GO:0009082: branched-chain amino acid biosynthetic process | 2.32E-03 |
| 50 | GO:0006458: 'de novo' protein folding | 2.32E-03 |
| 51 | GO:0009099: valine biosynthetic process | 2.32E-03 |
| 52 | GO:0009955: adaxial/abaxial pattern specification | 2.32E-03 |
| 53 | GO:0042026: protein refolding | 2.32E-03 |
| 54 | GO:1901259: chloroplast rRNA processing | 2.32E-03 |
| 55 | GO:0006821: chloride transport | 2.74E-03 |
| 56 | GO:0048437: floral organ development | 2.74E-03 |
| 57 | GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process | 2.74E-03 |
| 58 | GO:0048481: plant ovule development | 3.09E-03 |
| 59 | GO:0001522: pseudouridine synthesis | 3.17E-03 |
| 60 | GO:0019430: removal of superoxide radicals | 3.63E-03 |
| 61 | GO:0009097: isoleucine biosynthetic process | 3.63E-03 |
| 62 | GO:0032544: plastid translation | 3.63E-03 |
| 63 | GO:0007389: pattern specification process | 3.63E-03 |
| 64 | GO:0071482: cellular response to light stimulus | 3.63E-03 |
| 65 | GO:0000373: Group II intron splicing | 4.10E-03 |
| 66 | GO:0000902: cell morphogenesis | 4.10E-03 |
| 67 | GO:0031425: chloroplast RNA processing | 4.60E-03 |
| 68 | GO:0006535: cysteine biosynthetic process from serine | 5.11E-03 |
| 69 | GO:0006298: mismatch repair | 5.11E-03 |
| 70 | GO:0006265: DNA topological change | 5.65E-03 |
| 71 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 6.77E-03 |
| 72 | GO:0009736: cytokinin-activated signaling pathway | 6.78E-03 |
| 73 | GO:0009691: cytokinin biosynthetic process | 6.78E-03 |
| 74 | GO:0010540: basipetal auxin transport | 7.37E-03 |
| 75 | GO:0080188: RNA-directed DNA methylation | 7.98E-03 |
| 76 | GO:0019344: cysteine biosynthetic process | 9.26E-03 |
| 77 | GO:0009553: embryo sac development | 9.37E-03 |
| 78 | GO:0006418: tRNA aminoacylation for protein translation | 9.92E-03 |
| 79 | GO:0006396: RNA processing | 9.95E-03 |
| 80 | GO:0015992: proton transport | 1.06E-02 |
| 81 | GO:0010431: seed maturation | 1.06E-02 |
| 82 | GO:0061077: chaperone-mediated protein folding | 1.06E-02 |
| 83 | GO:0016226: iron-sulfur cluster assembly | 1.13E-02 |
| 84 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.20E-02 |
| 85 | GO:0010091: trichome branching | 1.27E-02 |
| 86 | GO:0042127: regulation of cell proliferation | 1.27E-02 |
| 87 | GO:0016117: carotenoid biosynthetic process | 1.35E-02 |
| 88 | GO:0042744: hydrogen peroxide catabolic process | 1.38E-02 |
| 89 | GO:0009790: embryo development | 1.42E-02 |
| 90 | GO:0000271: polysaccharide biosynthetic process | 1.43E-02 |
| 91 | GO:0008033: tRNA processing | 1.43E-02 |
| 92 | GO:0006662: glycerol ether metabolic process | 1.50E-02 |
| 93 | GO:0048868: pollen tube development | 1.50E-02 |
| 94 | GO:0009741: response to brassinosteroid | 1.50E-02 |
| 95 | GO:0045489: pectin biosynthetic process | 1.50E-02 |
| 96 | GO:0010305: leaf vascular tissue pattern formation | 1.50E-02 |
| 97 | GO:0006814: sodium ion transport | 1.58E-02 |
| 98 | GO:0007059: chromosome segregation | 1.58E-02 |
| 99 | GO:0009646: response to absence of light | 1.58E-02 |
| 100 | GO:0048825: cotyledon development | 1.66E-02 |
| 101 | GO:0019252: starch biosynthetic process | 1.66E-02 |
| 102 | GO:0009851: auxin biosynthetic process | 1.66E-02 |
| 103 | GO:0080156: mitochondrial mRNA modification | 1.75E-02 |
| 104 | GO:0032502: developmental process | 1.83E-02 |
| 105 | GO:0007166: cell surface receptor signaling pathway | 1.92E-02 |
| 106 | GO:0009828: plant-type cell wall loosening | 2.00E-02 |
| 107 | GO:0010252: auxin homeostasis | 2.00E-02 |
| 108 | GO:0010027: thylakoid membrane organization | 2.27E-02 |
| 109 | GO:0000160: phosphorelay signal transduction system | 2.84E-02 |
| 110 | GO:0048366: leaf development | 3.06E-02 |
| 111 | GO:0016051: carbohydrate biosynthetic process | 3.24E-02 |
| 112 | GO:0034599: cellular response to oxidative stress | 3.35E-02 |
| 113 | GO:0008283: cell proliferation | 3.88E-02 |
| 114 | GO:0009926: auxin polar transport | 3.88E-02 |
| 115 | GO:0009965: leaf morphogenesis | 4.22E-02 |
| 116 | GO:0009664: plant-type cell wall organization | 4.56E-02 |
| 117 | GO:0006364: rRNA processing | 4.80E-02 |
| 118 | GO:0006397: mRNA processing | 4.93E-02 |
| 119 | GO:0048364: root development | 4.93E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004152: dihydroorotate dehydrogenase activity | 0.00E+00 |
| 2 | GO:0004519: endonuclease activity | 3.78E-13 |
| 3 | GO:0003723: RNA binding | 2.30E-06 |
| 4 | GO:0008173: RNA methyltransferase activity | 1.72E-04 |
| 5 | GO:0016274: protein-arginine N-methyltransferase activity | 1.77E-04 |
| 6 | GO:0004830: tryptophan-tRNA ligase activity | 1.77E-04 |
| 7 | GO:0004797: thymidine kinase activity | 1.77E-04 |
| 8 | GO:0052381: tRNA dimethylallyltransferase activity | 1.77E-04 |
| 9 | GO:0004160: dihydroxy-acid dehydratase activity | 1.77E-04 |
| 10 | GO:0019843: rRNA binding | 2.78E-04 |
| 11 | GO:0004814: arginine-tRNA ligase activity | 4.01E-04 |
| 12 | GO:0004047: aminomethyltransferase activity | 4.01E-04 |
| 13 | GO:0042781: 3'-tRNA processing endoribonuclease activity | 6.55E-04 |
| 14 | GO:0009678: hydrogen-translocating pyrophosphatase activity | 9.34E-04 |
| 15 | GO:0008508: bile acid:sodium symporter activity | 9.34E-04 |
| 16 | GO:0009041: uridylate kinase activity | 9.34E-04 |
| 17 | GO:0005253: anion channel activity | 1.24E-03 |
| 18 | GO:0016279: protein-lysine N-methyltransferase activity | 1.24E-03 |
| 19 | GO:0016836: hydro-lyase activity | 1.24E-03 |
| 20 | GO:0003989: acetyl-CoA carboxylase activity | 1.57E-03 |
| 21 | GO:0005524: ATP binding | 1.57E-03 |
| 22 | GO:0005247: voltage-gated chloride channel activity | 1.94E-03 |
| 23 | GO:0030983: mismatched DNA binding | 1.94E-03 |
| 24 | GO:0004784: superoxide dismutase activity | 1.94E-03 |
| 25 | GO:0004124: cysteine synthase activity | 2.32E-03 |
| 26 | GO:0004747: ribokinase activity | 2.32E-03 |
| 27 | GO:0004427: inorganic diphosphatase activity | 2.74E-03 |
| 28 | GO:0008865: fructokinase activity | 3.17E-03 |
| 29 | GO:0004222: metalloendopeptidase activity | 3.41E-03 |
| 30 | GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity | 3.63E-03 |
| 31 | GO:0003724: RNA helicase activity | 3.63E-03 |
| 32 | GO:0051539: 4 iron, 4 sulfur cluster binding | 4.45E-03 |
| 33 | GO:0009672: auxin:proton symporter activity | 4.60E-03 |
| 34 | GO:0008168: methyltransferase activity | 4.70E-03 |
| 35 | GO:0044183: protein binding involved in protein folding | 5.65E-03 |
| 36 | GO:0009982: pseudouridine synthase activity | 6.78E-03 |
| 37 | GO:0010329: auxin efflux transmembrane transporter activity | 6.78E-03 |
| 38 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 7.37E-03 |
| 39 | GO:0004672: protein kinase activity | 8.45E-03 |
| 40 | GO:0008026: ATP-dependent helicase activity | 1.02E-02 |
| 41 | GO:0004176: ATP-dependent peptidase activity | 1.06E-02 |
| 42 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 1.13E-02 |
| 43 | GO:0047134: protein-disulfide reductase activity | 1.35E-02 |
| 44 | GO:0004812: aminoacyl-tRNA ligase activity | 1.35E-02 |
| 45 | GO:0003713: transcription coactivator activity | 1.50E-02 |
| 46 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 1.56E-02 |
| 47 | GO:0004791: thioredoxin-disulfide reductase activity | 1.58E-02 |
| 48 | GO:0019901: protein kinase binding | 1.66E-02 |
| 49 | GO:0016887: ATPase activity | 1.86E-02 |
| 50 | GO:0000156: phosphorelay response regulator activity | 1.91E-02 |
| 51 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.91E-02 |
| 52 | GO:0003684: damaged DNA binding | 2.00E-02 |
| 53 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 2.09E-02 |
| 54 | GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity | 2.09E-02 |
| 55 | GO:0008237: metallopeptidase activity | 2.09E-02 |
| 56 | GO:0004601: peroxidase activity | 2.60E-02 |
| 57 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 3.11E-02 |
| 58 | GO:0003746: translation elongation factor activity | 3.24E-02 |
| 59 | GO:0003993: acid phosphatase activity | 3.35E-02 |
| 60 | GO:0005507: copper ion binding | 3.42E-02 |
| 61 | GO:0003690: double-stranded DNA binding | 4.92E-02 |