Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G30424

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006429: leucyl-tRNA aminoacylation0.00E+00
2GO:1905421: regulation of plant organ morphogenesis0.00E+00
3GO:0043488: regulation of mRNA stability0.00E+00
4GO:0061157: mRNA destabilization0.00E+00
5GO:0030155: regulation of cell adhesion0.00E+00
6GO:0090706: specification of plant organ position0.00E+00
7GO:0031116: positive regulation of microtubule polymerization0.00E+00
8GO:0010068: protoderm histogenesis0.00E+00
9GO:0007037: vacuolar phosphate transport0.00E+00
10GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
11GO:0007638: mechanosensory behavior0.00E+00
12GO:0042817: pyridoxal metabolic process0.00E+00
13GO:1905177: tracheary element differentiation0.00E+00
14GO:0031129: inductive cell-cell signaling0.00E+00
15GO:1900865: chloroplast RNA modification8.27E-05
16GO:0009647: skotomorphogenesis9.04E-05
17GO:0006415: translational termination1.32E-04
18GO:0045038: protein import into chloroplast thylakoid membrane2.38E-04
19GO:0040008: regulation of growth2.58E-04
20GO:0007166: cell surface receptor signaling pathway3.81E-04
21GO:0009648: photoperiodism4.47E-04
22GO:0034080: CENP-A containing nucleosome assembly5.37E-04
23GO:1902458: positive regulation of stomatal opening5.37E-04
24GO:0005991: trehalose metabolic process5.37E-04
25GO:0010450: inflorescence meristem growth5.37E-04
26GO:0006747: FAD biosynthetic process5.37E-04
27GO:0051171: regulation of nitrogen compound metabolic process5.37E-04
28GO:0000476: maturation of 4.5S rRNA5.37E-04
29GO:0000967: rRNA 5'-end processing5.37E-04
30GO:0051418: microtubule nucleation by microtubule organizing center5.37E-04
31GO:0010482: regulation of epidermal cell division5.37E-04
32GO:0071028: nuclear mRNA surveillance5.37E-04
33GO:0006659: phosphatidylserine biosynthetic process5.37E-04
34GO:0042547: cell wall modification involved in multidimensional cell growth5.37E-04
35GO:0070413: trehalose metabolism in response to stress7.13E-04
36GO:0032544: plastid translation8.68E-04
37GO:0031125: rRNA 3'-end processing1.16E-03
38GO:1903426: regulation of reactive oxygen species biosynthetic process1.16E-03
39GO:0015804: neutral amino acid transport1.16E-03
40GO:0071051: polyadenylation-dependent snoRNA 3'-end processing1.16E-03
41GO:0034470: ncRNA processing1.16E-03
42GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.16E-03
43GO:0006739: NADP metabolic process1.16E-03
44GO:0034475: U4 snRNA 3'-end processing1.16E-03
45GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole1.16E-03
46GO:0033566: gamma-tubulin complex localization1.16E-03
47GO:1900871: chloroplast mRNA modification1.16E-03
48GO:0007154: cell communication1.16E-03
49GO:2000039: regulation of trichome morphogenesis1.16E-03
50GO:0034755: iron ion transmembrane transport1.16E-03
51GO:0042814: monopolar cell growth1.16E-03
52GO:0009585: red, far-red light phototransduction1.39E-03
53GO:0009684: indoleacetic acid biosynthetic process1.65E-03
54GO:0006468: protein phosphorylation1.82E-03
55GO:0045493: xylan catabolic process1.90E-03
56GO:0045165: cell fate commitment1.90E-03
57GO:0007052: mitotic spindle organization1.90E-03
58GO:0016075: rRNA catabolic process1.90E-03
59GO:0033591: response to L-ascorbic acid1.90E-03
60GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'1.90E-03
61GO:0048281: inflorescence morphogenesis1.90E-03
62GO:0051127: positive regulation of actin nucleation1.90E-03
63GO:0010623: programmed cell death involved in cell development1.90E-03
64GO:0080055: low-affinity nitrate transport1.90E-03
65GO:0045604: regulation of epidermal cell differentiation1.90E-03
66GO:0009150: purine ribonucleotide metabolic process1.90E-03
67GO:0001578: microtubule bundle formation1.90E-03
68GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center2.75E-03
69GO:0034508: centromere complex assembly2.75E-03
70GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.75E-03
71GO:0006166: purine ribonucleoside salvage2.75E-03
72GO:0007231: osmosensory signaling pathway2.75E-03
73GO:0051639: actin filament network formation2.75E-03
74GO:0009226: nucleotide-sugar biosynthetic process2.75E-03
75GO:0048645: animal organ formation2.75E-03
76GO:0008615: pyridoxine biosynthetic process2.75E-03
77GO:0090307: mitotic spindle assembly2.75E-03
78GO:0010255: glucose mediated signaling pathway2.75E-03
79GO:0048530: fruit morphogenesis2.75E-03
80GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.75E-03
81GO:0006168: adenine salvage2.75E-03
82GO:0006164: purine nucleotide biosynthetic process2.75E-03
83GO:0010148: transpiration2.75E-03
84GO:0009963: positive regulation of flavonoid biosynthetic process2.75E-03
85GO:0009658: chloroplast organization2.81E-03
86GO:0042753: positive regulation of circadian rhythm3.04E-03
87GO:0005992: trehalose biosynthetic process3.37E-03
88GO:0009944: polarity specification of adaxial/abaxial axis3.37E-03
89GO:0007010: cytoskeleton organization3.37E-03
90GO:0051764: actin crosslink formation3.71E-03
91GO:0051322: anaphase3.71E-03
92GO:0009765: photosynthesis, light harvesting3.71E-03
93GO:0033500: carbohydrate homeostasis3.71E-03
94GO:0022622: root system development3.71E-03
95GO:0006021: inositol biosynthetic process3.71E-03
96GO:0009649: entrainment of circadian clock3.71E-03
97GO:0010508: positive regulation of autophagy3.71E-03
98GO:0007020: microtubule nucleation3.71E-03
99GO:0006734: NADH metabolic process3.71E-03
100GO:0032366: intracellular sterol transport3.71E-03
101GO:0006418: tRNA aminoacylation for protein translation3.72E-03
102GO:0048511: rhythmic process4.09E-03
103GO:1902183: regulation of shoot apical meristem development4.75E-03
104GO:0016123: xanthophyll biosynthetic process4.75E-03
105GO:0044209: AMP salvage4.75E-03
106GO:0010158: abaxial cell fate specification4.75E-03
107GO:0046785: microtubule polymerization4.75E-03
108GO:0032543: mitochondrial translation4.75E-03
109GO:0046283: anthocyanin-containing compound metabolic process4.75E-03
110GO:0016120: carotene biosynthetic process4.75E-03
111GO:0009733: response to auxin5.24E-03
112GO:0045490: pectin catabolic process5.54E-03
113GO:0009789: positive regulation of abscisic acid-activated signaling pathway5.77E-03
114GO:0042549: photosystem II stabilization5.89E-03
115GO:0010264: myo-inositol hexakisphosphate biosynthetic process5.89E-03
116GO:0048831: regulation of shoot system development5.89E-03
117GO:0016554: cytidine to uridine editing5.89E-03
118GO:0032973: amino acid export5.89E-03
119GO:0000741: karyogamy5.89E-03
120GO:0000226: microtubule cytoskeleton organization6.24E-03
121GO:0009958: positive gravitropism6.74E-03
122GO:0048444: floral organ morphogenesis7.11E-03
123GO:0080086: stamen filament development7.11E-03
124GO:0009955: adaxial/abaxial pattern specification7.11E-03
125GO:0042372: phylloquinone biosynthetic process7.11E-03
126GO:0048280: vesicle fusion with Golgi apparatus7.11E-03
127GO:0030488: tRNA methylation7.11E-03
128GO:1901259: chloroplast rRNA processing7.11E-03
129GO:0007018: microtubule-based movement7.25E-03
130GO:0010103: stomatal complex morphogenesis8.42E-03
131GO:0032880: regulation of protein localization8.42E-03
132GO:0009395: phospholipid catabolic process8.42E-03
133GO:0048528: post-embryonic root development8.42E-03
134GO:0043090: amino acid import8.42E-03
135GO:0070370: cellular heat acclimation8.42E-03
136GO:0009231: riboflavin biosynthetic process9.81E-03
137GO:0052543: callose deposition in cell wall9.81E-03
138GO:0007155: cell adhesion9.81E-03
139GO:0010078: maintenance of root meristem identity9.81E-03
140GO:0042255: ribosome assembly9.81E-03
141GO:0046620: regulation of organ growth9.81E-03
142GO:2000070: regulation of response to water deprivation9.81E-03
143GO:0006353: DNA-templated transcription, termination9.81E-03
144GO:0043562: cellular response to nitrogen levels1.13E-02
145GO:0010093: specification of floral organ identity1.13E-02
146GO:0001558: regulation of cell growth1.13E-02
147GO:0009657: plastid organization1.13E-02
148GO:0006997: nucleus organization1.13E-02
149GO:0006396: RNA processing1.17E-02
150GO:0009051: pentose-phosphate shunt, oxidative branch1.28E-02
151GO:0080144: amino acid homeostasis1.28E-02
152GO:2000024: regulation of leaf development1.28E-02
153GO:0000373: Group II intron splicing1.28E-02
154GO:0006189: 'de novo' IMP biosynthetic process1.28E-02
155GO:0009627: systemic acquired resistance1.35E-02
156GO:0071577: zinc II ion transmembrane transport1.44E-02
157GO:0009638: phototropism1.44E-02
158GO:0010018: far-red light signaling pathway1.44E-02
159GO:0010380: regulation of chlorophyll biosynthetic process1.44E-02
160GO:0045036: protein targeting to chloroplast1.61E-02
161GO:0009641: shade avoidance1.61E-02
162GO:0006949: syncytium formation1.61E-02
163GO:0009299: mRNA transcription1.61E-02
164GO:0006896: Golgi to vacuole transport1.61E-02
165GO:0006535: cysteine biosynthetic process from serine1.61E-02
166GO:0009832: plant-type cell wall biogenesis1.67E-02
167GO:0006816: calcium ion transport1.79E-02
168GO:0009773: photosynthetic electron transport in photosystem I1.79E-02
169GO:1903507: negative regulation of nucleic acid-templated transcription1.79E-02
170GO:0006879: cellular iron ion homeostasis1.79E-02
171GO:0000272: polysaccharide catabolic process1.79E-02
172GO:0048527: lateral root development1.84E-02
173GO:0006790: sulfur compound metabolic process1.97E-02
174GO:0016024: CDP-diacylglycerol biosynthetic process1.97E-02
175GO:0030036: actin cytoskeleton organization2.15E-02
176GO:0009725: response to hormone2.15E-02
177GO:0010588: cotyledon vascular tissue pattern formation2.15E-02
178GO:2000012: regulation of auxin polar transport2.15E-02
179GO:0010628: positive regulation of gene expression2.15E-02
180GO:0006006: glucose metabolic process2.15E-02
181GO:0048467: gynoecium development2.35E-02
182GO:0010207: photosystem II assembly2.35E-02
183GO:0010143: cutin biosynthetic process2.35E-02
184GO:0006541: glutamine metabolic process2.35E-02
185GO:0010020: chloroplast fission2.35E-02
186GO:0009933: meristem structural organization2.35E-02
187GO:0071732: cellular response to nitric oxide2.55E-02
188GO:0090351: seedling development2.55E-02
189GO:0010030: positive regulation of seed germination2.55E-02
190GO:0070588: calcium ion transmembrane transport2.55E-02
191GO:0016042: lipid catabolic process2.56E-02
192GO:0009640: photomorphogenesis2.60E-02
193GO:0009833: plant-type primary cell wall biogenesis2.75E-02
194GO:0006833: water transport2.75E-02
195GO:0000162: tryptophan biosynthetic process2.75E-02
196GO:0009965: leaf morphogenesis2.92E-02
197GO:0019344: cysteine biosynthetic process2.96E-02
198GO:0030150: protein import into mitochondrial matrix2.96E-02
199GO:0051017: actin filament bundle assembly2.96E-02
200GO:0010187: negative regulation of seed germination2.96E-02
201GO:0051302: regulation of cell division3.18E-02
202GO:0043622: cortical microtubule organization3.18E-02
203GO:0055085: transmembrane transport3.26E-02
204GO:0009664: plant-type cell wall organization3.27E-02
205GO:0003333: amino acid transmembrane transport3.40E-02
206GO:0031348: negative regulation of defense response3.63E-02
207GO:0009814: defense response, incompatible interaction3.63E-02
208GO:2000022: regulation of jasmonic acid mediated signaling pathway3.63E-02
209GO:0051603: proteolysis involved in cellular protein catabolic process3.63E-02
210GO:0006730: one-carbon metabolic process3.63E-02
211GO:0001944: vasculature development3.86E-02
212GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.86E-02
213GO:0010082: regulation of root meristem growth3.86E-02
214GO:0071369: cellular response to ethylene stimulus3.86E-02
215GO:0010089: xylem development4.09E-02
216GO:0010214: seed coat development4.09E-02
217GO:0010091: trichome branching4.09E-02
218GO:0009306: protein secretion4.09E-02
219GO:0048367: shoot system development4.27E-02
220GO:0016117: carotenoid biosynthetic process4.33E-02
221GO:0008284: positive regulation of cell proliferation4.33E-02
222GO:0042147: retrograde transport, endosome to Golgi4.33E-02
223GO:0009734: auxin-activated signaling pathway4.39E-02
224GO:0010087: phloem or xylem histogenesis4.58E-02
225GO:0042631: cellular response to water deprivation4.58E-02
226GO:0000271: polysaccharide biosynthetic process4.58E-02
227GO:0080022: primary root development4.58E-02
228GO:0042335: cuticle development4.58E-02
229GO:0008033: tRNA processing4.58E-02
230GO:0034220: ion transmembrane transport4.58E-02
231GO:0000413: protein peptidyl-prolyl isomerization4.58E-02
232GO:0009740: gibberellic acid mediated signaling pathway4.68E-02
233GO:0010182: sugar mediated signaling pathway4.83E-02
234GO:0008360: regulation of cell shape4.83E-02
235GO:0045489: pectin biosynthetic process4.83E-02
236GO:0010154: fruit development4.83E-02
237GO:0010197: polar nucleus fusion4.83E-02
RankGO TermAdjusted P value
1GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
2GO:0043864: indoleacetamide hydrolase activity0.00E+00
3GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
4GO:0045435: lycopene epsilon cyclase activity0.00E+00
5GO:0004823: leucine-tRNA ligase activity0.00E+00
6GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity0.00E+00
7GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
8GO:0004822: isoleucine-tRNA ligase activity0.00E+00
9GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.84E-05
10GO:0002161: aminoacyl-tRNA editing activity4.25E-05
11GO:0030570: pectate lyase activity5.21E-05
12GO:0003747: translation release factor activity6.32E-05
13GO:0016149: translation release factor activity, codon specific9.04E-05
14GO:0008017: microtubule binding3.16E-04
15GO:0050139: nicotinate-N-glucosyltransferase activity5.37E-04
16GO:0004733: pyridoxamine-phosphate oxidase activity5.37E-04
17GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity5.37E-04
18GO:0052857: NADPHX epimerase activity5.37E-04
19GO:0052856: NADHX epimerase activity5.37E-04
20GO:0016788: hydrolase activity, acting on ester bonds7.37E-04
21GO:0016829: lyase activity8.46E-04
22GO:0050017: L-3-cyanoalanine synthase activity1.16E-03
23GO:0017118: lipoyltransferase activity1.16E-03
24GO:0043425: bHLH transcription factor binding1.16E-03
25GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity1.16E-03
26GO:0009977: proton motive force dependent protein transmembrane transporter activity1.16E-03
27GO:0080097: L-tryptophan:pyruvate aminotransferase activity1.16E-03
28GO:0016630: protochlorophyllide reductase activity1.16E-03
29GO:0003919: FMN adenylyltransferase activity1.16E-03
30GO:0015172: acidic amino acid transmembrane transporter activity1.16E-03
31GO:0004512: inositol-3-phosphate synthase activity1.16E-03
32GO:0016791: phosphatase activity1.48E-03
33GO:0047372: acylglycerol lipase activity1.65E-03
34GO:0004049: anthranilate synthase activity1.90E-03
35GO:0080054: low-affinity nitrate transmembrane transporter activity1.90E-03
36GO:0047627: adenylylsulfatase activity2.75E-03
37GO:0001872: (1->3)-beta-D-glucan binding2.75E-03
38GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity2.75E-03
39GO:0015175: neutral amino acid transmembrane transporter activity2.75E-03
40GO:0003999: adenine phosphoribosyltransferase activity2.75E-03
41GO:0017172: cysteine dioxygenase activity2.75E-03
42GO:0005528: FK506 binding3.37E-03
43GO:0046556: alpha-L-arabinofuranosidase activity3.71E-03
44GO:0004345: glucose-6-phosphate dehydrogenase activity3.71E-03
45GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds3.71E-03
46GO:0080032: methyl jasmonate esterase activity3.71E-03
47GO:0043015: gamma-tubulin binding3.71E-03
48GO:0009044: xylan 1,4-beta-xylosidase activity3.71E-03
49GO:0019199: transmembrane receptor protein kinase activity3.71E-03
50GO:0042277: peptide binding3.71E-03
51GO:0016846: carbon-sulfur lyase activity4.75E-03
52GO:0004040: amidase activity4.75E-03
53GO:0003727: single-stranded RNA binding5.32E-03
54GO:0004812: aminoacyl-tRNA ligase activity5.77E-03
55GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity5.89E-03
56GO:0016208: AMP binding5.89E-03
57GO:0004366: glycerol-3-phosphate O-acyltransferase activity5.89E-03
58GO:0102229: amylopectin maltohydrolase activity5.89E-03
59GO:0042578: phosphoric ester hydrolase activity5.89E-03
60GO:0003755: peptidyl-prolyl cis-trans isomerase activity5.98E-03
61GO:0004124: cysteine synthase activity7.11E-03
62GO:0003730: mRNA 3'-UTR binding7.11E-03
63GO:0016161: beta-amylase activity7.11E-03
64GO:0004723: calcium-dependent protein serine/threonine phosphatase activity7.11E-03
65GO:0042802: identical protein binding7.99E-03
66GO:0003777: microtubule motor activity8.19E-03
67GO:0004674: protein serine/threonine kinase activity8.33E-03
68GO:0019899: enzyme binding8.42E-03
69GO:0016301: kinase activity8.63E-03
70GO:0043022: ribosome binding9.81E-03
71GO:0008173: RNA methyltransferase activity1.13E-02
72GO:0030247: polysaccharide binding1.43E-02
73GO:0005381: iron ion transmembrane transporter activity1.44E-02
74GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.56E-02
75GO:0004713: protein tyrosine kinase activity1.61E-02
76GO:0004805: trehalose-phosphatase activity1.61E-02
77GO:0052689: carboxylic ester hydrolase activity1.74E-02
78GO:0008327: methyl-CpG binding1.79E-02
79GO:0000049: tRNA binding1.97E-02
80GO:0003993: acid phosphatase activity2.11E-02
81GO:0004089: carbonate dehydratase activity2.15E-02
82GO:0031072: heat shock protein binding2.15E-02
83GO:0005262: calcium channel activity2.15E-02
84GO:0000175: 3'-5'-exoribonuclease activity2.15E-02
85GO:0015266: protein channel activity2.15E-02
86GO:0008083: growth factor activity2.35E-02
87GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.35E-02
88GO:0004185: serine-type carboxypeptidase activity2.60E-02
89GO:0043621: protein self-association2.81E-02
90GO:0005385: zinc ion transmembrane transporter activity2.96E-02
91GO:0003714: transcription corepressor activity2.96E-02
92GO:0016757: transferase activity, transferring glycosyl groups3.03E-02
93GO:0051087: chaperone binding3.18E-02
94GO:0008324: cation transmembrane transporter activity3.18E-02
95GO:0008408: 3'-5' exonuclease activity3.40E-02
96GO:0004176: ATP-dependent peptidase activity3.40E-02
97GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity3.63E-02
98GO:0016760: cellulose synthase (UDP-forming) activity3.86E-02
99GO:0015171: amino acid transmembrane transporter activity3.88E-02
100GO:0001085: RNA polymerase II transcription factor binding4.83E-02
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Gene type



Gene DE type