co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G29650

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
2	GO:0050732: negative regulation of peptidyl-tyrosine phosphorylation	0.00E+00
3	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
4	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
5	GO:0015979: photosynthesis	2.87E-18
6	GO:0009768: photosynthesis, light harvesting in photosystem I	3.56E-13
7	GO:0018298: protein-chromophore linkage	1.16E-10
8	GO:0009645: response to low light intensity stimulus	3.64E-09
9	GO:0010207: photosystem II assembly	1.54E-07
10	GO:0015995: chlorophyll biosynthetic process	2.38E-07
11	GO:0010218: response to far red light	4.13E-07
12	GO:0009637: response to blue light	6.04E-07
13	GO:0010114: response to red light	1.20E-06
14	GO:0090391: granum assembly	3.53E-06
15	GO:0019253: reductive pentose-phosphate cycle	1.13E-05
16	GO:0010600: regulation of auxin biosynthetic process	1.55E-05
17	GO:0009644: response to high light intensity	3.49E-05
18	GO:0010189: vitamin E biosynthetic process	5.36E-05
19	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	5.36E-05
20	GO:0010196: nonphotochemical quenching	7.18E-05
21	GO:0009704: de-etiolation	9.31E-05
22	GO:0010928: regulation of auxin mediated signaling pathway	9.31E-05
23	GO:0032544: plastid translation	1.17E-04
24	GO:0046467: membrane lipid biosynthetic process	1.37E-04
25	GO:0048640: negative regulation of developmental growth	1.37E-04
26	GO:0080093: regulation of photorespiration	1.37E-04
27	GO:0031998: regulation of fatty acid beta-oxidation	1.37E-04
28	GO:0019510: S-adenosylhomocysteine catabolic process	1.37E-04
29	GO:0071277: cellular response to calcium ion	1.37E-04
30	GO:0009773: photosynthetic electron transport in photosystem I	2.39E-04
31	GO:0006094: gluconeogenesis	3.14E-04
32	GO:0030388: fructose 1,6-bisphosphate metabolic process	3.16E-04
33	GO:0042819: vitamin B6 biosynthetic process	3.16E-04
34	GO:0033353: S-adenosylmethionine cycle	3.16E-04
35	GO:0055114: oxidation-reduction process	3.20E-04
36	GO:0006636: unsaturated fatty acid biosynthetic process	4.45E-04
37	GO:0006081: cellular aldehyde metabolic process	5.20E-04
38	GO:0006000: fructose metabolic process	5.20E-04
39	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	7.44E-04
40	GO:0071484: cellular response to light intensity	7.44E-04
41	GO:0042823: pyridoxal phosphate biosynthetic process	7.44E-04
42	GO:0006546: glycine catabolic process	9.85E-04
43	GO:0015976: carbon utilization	9.85E-04
44	GO:0019464: glycine decarboxylation via glycine cleavage system	9.85E-04
45	GO:0009765: photosynthesis, light harvesting	9.85E-04
46	GO:0015994: chlorophyll metabolic process	9.85E-04
47	GO:0009409: response to cold	1.03E-03
48	GO:0019252: starch biosynthetic process	1.10E-03
49	GO:0006810: transport	1.20E-03
50	GO:0032259: methylation	1.22E-03
51	GO:0006097: glyoxylate cycle	1.25E-03
52	GO:0009107: lipoate biosynthetic process	1.25E-03
53	GO:0007094: mitotic spindle assembly checkpoint	1.25E-03
54	GO:0006656: phosphatidylcholine biosynthetic process	1.25E-03
55	GO:0043097: pyrimidine nucleoside salvage	1.25E-03
56	GO:0010190: cytochrome b6f complex assembly	1.53E-03
57	GO:0050665: hydrogen peroxide biosynthetic process	1.53E-03
58	GO:0006206: pyrimidine nucleobase metabolic process	1.53E-03
59	GO:0009854: oxidative photosynthetic carbon pathway	1.83E-03
60	GO:1900057: positive regulation of leaf senescence	2.15E-03
61	GO:0010161: red light signaling pathway	2.15E-03
62	GO:0009769: photosynthesis, light harvesting in photosystem II	2.15E-03
63	GO:0050829: defense response to Gram-negative bacterium	2.15E-03
64	GO:0042742: defense response to bacterium	2.30E-03
65	GO:0009735: response to cytokinin	2.72E-03
66	GO:0006002: fructose 6-phosphate metabolic process	2.85E-03
67	GO:0034599: cellular response to oxidative stress	2.87E-03
68	GO:0090333: regulation of stomatal closure	3.22E-03
69	GO:0006783: heme biosynthetic process	3.22E-03
70	GO:0006754: ATP biosynthetic process	3.22E-03
71	GO:0010206: photosystem II repair	3.22E-03
72	GO:0010205: photoinhibition	3.60E-03
73	GO:0006779: porphyrin-containing compound biosynthetic process	3.60E-03
74	GO:0042761: very long-chain fatty acid biosynthetic process	3.60E-03
75	GO:0006782: protoporphyrinogen IX biosynthetic process	4.00E-03
76	GO:0018119: peptidyl-cysteine S-nitrosylation	4.42E-03
77	GO:0009698: phenylpropanoid metabolic process	4.42E-03
78	GO:0009585: red, far-red light phototransduction	4.75E-03
79	GO:0006108: malate metabolic process	5.30E-03
80	GO:0006006: glucose metabolic process	5.30E-03
81	GO:0009767: photosynthetic electron transport chain	5.30E-03
82	GO:0005986: sucrose biosynthetic process	5.30E-03
83	GO:0006096: glycolytic process	5.62E-03
84	GO:0010143: cutin biosynthetic process	5.76E-03
85	GO:0006869: lipid transport	5.82E-03
86	GO:0007031: peroxisome organization	6.23E-03
87	GO:0051302: regulation of cell division	7.73E-03
88	GO:0009269: response to desiccation	8.26E-03
89	GO:0031408: oxylipin biosynthetic process	8.26E-03
90	GO:0051321: meiotic cell cycle	8.26E-03
91	GO:0030433: ubiquitin-dependent ERAD pathway	8.79E-03
92	GO:0007005: mitochondrion organization	8.79E-03
93	GO:0010017: red or far-red light signaling pathway	8.79E-03
94	GO:0006730: one-carbon metabolic process	8.79E-03
95	GO:0009693: ethylene biosynthetic process	9.35E-03
96	GO:0006606: protein import into nucleus	1.11E-02
97	GO:0006662: glycerol ether metabolic process	1.17E-02
98	GO:0007623: circadian rhythm	1.17E-02
99	GO:0007059: chromosome segregation	1.23E-02
100	GO:0009646: response to absence of light	1.23E-02
101	GO:0008654: phospholipid biosynthetic process	1.29E-02
102	GO:0009416: response to light stimulus	1.40E-02
103	GO:0010583: response to cyclopentenone	1.42E-02
104	GO:0010027: thylakoid membrane organization	1.76E-02
105	GO:0009658: chloroplast organization	1.82E-02
106	GO:0010411: xyloglucan metabolic process	1.98E-02
107	GO:0080167: response to karrikin	2.25E-02
108	GO:0007568: aging	2.36E-02
109	GO:0016051: carbohydrate biosynthetic process	2.51E-02
110	GO:0009853: photorespiration	2.51E-02
111	GO:0006099: tricarboxylic acid cycle	2.60E-02
112	GO:0045454: cell redox homeostasis	2.70E-02
113	GO:0042546: cell wall biogenesis	3.10E-02
114	GO:0000209: protein polyubiquitination	3.10E-02
115	GO:0006812: cation transport	3.54E-02
116	GO:0043086: negative regulation of catalytic activity	4.19E-02
117	GO:0042545: cell wall modification	4.68E-02
118	GO:0006396: RNA processing	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
2	GO:0008974: phosphoribulokinase activity	0.00E+00
3	GO:0102345: 3-hydroxy-lignoceroyl-CoA dehydratase activity	0.00E+00
4	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
5	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
6	GO:0050342: tocopherol O-methyltransferase activity	0.00E+00
7	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
8	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
9	GO:0046863: ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity	0.00E+00
10	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
11	GO:0102344: 3-hydroxy-behenoyl-CoA dehydratase activity	0.00E+00
12	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
13	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
14	GO:0052667: phosphomethylethanolamine N-methyltransferase activity	0.00E+00
15	GO:0045550: geranylgeranyl reductase activity	0.00E+00
16	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
17	GO:0031409: pigment binding	1.49E-13
18	GO:0016168: chlorophyll binding	5.15E-11
19	GO:0048038: quinone binding	8.34E-05
20	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	1.37E-04
21	GO:0030794: (S)-coclaurine-N-methyltransferase activity	1.37E-04
22	GO:0004013: adenosylhomocysteinase activity	1.37E-04
23	GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity	1.37E-04
24	GO:0016491: oxidoreductase activity	2.35E-04
25	GO:0000234: phosphoethanolamine N-methyltransferase activity	3.16E-04
26	GO:0008883: glutamyl-tRNA reductase activity	3.16E-04
27	GO:0047746: chlorophyllase activity	3.16E-04
28	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	3.16E-04
29	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	3.16E-04
30	GO:0036381: pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity	3.16E-04
31	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	3.16E-04
32	GO:0018708: thiol S-methyltransferase activity	3.16E-04
33	GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity	5.20E-04
34	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	5.20E-04
35	GO:0010277: chlorophyllide a oxygenase [overall] activity	5.20E-04
36	GO:0016992: lipoate synthase activity	5.20E-04
37	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	7.44E-04
38	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	7.44E-04
39	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	7.44E-04
40	GO:0004375: glycine dehydrogenase (decarboxylating) activity	7.44E-04
41	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	7.44E-04
42	GO:0016851: magnesium chelatase activity	7.44E-04
43	GO:0008891: glycolate oxidase activity	9.85E-04
44	GO:0008453: alanine-glyoxylate transaminase activity	9.85E-04
45	GO:0052793: pectin acetylesterase activity	9.85E-04
46	GO:0009011: starch synthase activity	9.85E-04
47	GO:0016791: phosphatase activity	1.41E-03
48	GO:0004029: aldehyde dehydrogenase (NAD) activity	1.53E-03
49	GO:0016615: malate dehydrogenase activity	1.53E-03
50	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.53E-03
51	GO:0004332: fructose-bisphosphate aldolase activity	1.53E-03
52	GO:0042578: phosphoric ester hydrolase activity	1.53E-03
53	GO:0030060: L-malate dehydrogenase activity	1.83E-03
54	GO:0004849: uridine kinase activity	1.83E-03
55	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	2.85E-03
56	GO:0050661: NADP binding	3.13E-03
57	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	3.22E-03
58	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	3.60E-03
59	GO:0051537: 2 iron, 2 sulfur cluster binding	3.82E-03
60	GO:0030234: enzyme regulator activity	4.00E-03
61	GO:0051287: NAD binding	4.27E-03
62	GO:0005515: protein binding	4.29E-03
63	GO:0004089: carbonate dehydratase activity	5.30E-03
64	GO:0031072: heat shock protein binding	5.30E-03
65	GO:0004725: protein tyrosine phosphatase activity	6.71E-03
66	GO:0015035: protein disulfide oxidoreductase activity	6.96E-03
67	GO:0008289: lipid binding	1.03E-02
68	GO:0047134: protein-disulfide reductase activity	1.05E-02
69	GO:0046910: pectinesterase inhibitor activity	1.09E-02
70	GO:0008080: N-acetyltransferase activity	1.17E-02
71	GO:0004791: thioredoxin-disulfide reductase activity	1.23E-02
72	GO:0010181: FMN binding	1.23E-02
73	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.36E-02
74	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.49E-02
75	GO:0042802: identical protein binding	1.49E-02
76	GO:0046872: metal ion binding	1.62E-02
77	GO:0008168: methyltransferase activity	1.75E-02
78	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.98E-02
79	GO:0004721: phosphoprotein phosphatase activity	1.98E-02
80	GO:0030145: manganese ion binding	2.36E-02
81	GO:0003735: structural constituent of ribosome	2.55E-02
82	GO:0003993: acid phosphatase activity	2.60E-02
83	GO:0042803: protein homodimerization activity	2.83E-02
84	GO:0004185: serine-type carboxypeptidase activity	3.01E-02
85	GO:0009055: electron carrier activity	3.56E-02
86	GO:0031625: ubiquitin protein ligase binding	4.00E-02
87	GO:0045330: aspartyl esterase activity	4.00E-02
88	GO:0016874: ligase activity	4.58E-02
89	GO:0030599: pectinesterase activity	4.58E-02
90	GO:0051082: unfolded protein binding	4.78E-02
91	GO:0016746: transferase activity, transferring acyl groups	4.88E-02