Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G29290

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010335: response to non-ionic osmotic stress0.00E+00
2GO:1901918: negative regulation of exoribonuclease activity0.00E+00
3GO:0033494: ferulate metabolic process0.00E+00
4GO:0032928: regulation of superoxide anion generation0.00E+00
5GO:0015670: carbon dioxide transport0.00E+00
6GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
7GO:0005996: monosaccharide metabolic process0.00E+00
8GO:0008298: intracellular mRNA localization0.00E+00
9GO:0046471: phosphatidylglycerol metabolic process0.00E+00
10GO:0034337: RNA folding0.00E+00
11GO:0006982: response to lipid hydroperoxide0.00E+00
12GO:0015995: chlorophyll biosynthetic process6.05E-09
13GO:0010207: photosystem II assembly4.26E-07
14GO:0055114: oxidation-reduction process1.04E-06
15GO:0009658: chloroplast organization4.73E-06
16GO:0006094: gluconeogenesis1.13E-05
17GO:0006810: transport7.81E-05
18GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.01E-04
19GO:0015979: photosynthesis1.06E-04
20GO:0009773: photosynthetic electron transport in photosystem I1.53E-04
21GO:0015994: chlorophyll metabolic process1.74E-04
22GO:0006546: glycine catabolic process1.74E-04
23GO:0006021: inositol biosynthetic process1.74E-04
24GO:0010143: cutin biosynthetic process2.68E-04
25GO:0006636: unsaturated fatty acid biosynthetic process3.64E-04
26GO:0046855: inositol phosphate dephosphorylation3.71E-04
27GO:0042549: photosystem II stabilization3.71E-04
28GO:0051180: vitamin transport5.75E-04
29GO:0010362: negative regulation of anion channel activity by blue light5.75E-04
30GO:0015969: guanosine tetraphosphate metabolic process5.75E-04
31GO:0030974: thiamine pyrophosphate transport5.75E-04
32GO:0046467: membrane lipid biosynthetic process5.75E-04
33GO:0031426: polycistronic mRNA processing5.75E-04
34GO:1904966: positive regulation of vitamin E biosynthetic process5.75E-04
35GO:0000481: maturation of 5S rRNA5.75E-04
36GO:0043953: protein transport by the Tat complex5.75E-04
37GO:0015801: aromatic amino acid transport5.75E-04
38GO:1904964: positive regulation of phytol biosynthetic process5.75E-04
39GO:0010426: DNA methylation on cytosine within a CHH sequence5.75E-04
40GO:0065002: intracellular protein transmembrane transport5.75E-04
41GO:0043686: co-translational protein modification5.75E-04
42GO:0043087: regulation of GTPase activity5.75E-04
43GO:0071461: cellular response to redox state5.75E-04
44GO:0071277: cellular response to calcium ion5.75E-04
45GO:0046167: glycerol-3-phosphate biosynthetic process5.75E-04
46GO:0043007: maintenance of rDNA5.75E-04
47GO:1902458: positive regulation of stomatal opening5.75E-04
48GO:0019722: calcium-mediated signaling7.54E-04
49GO:0009704: de-etiolation7.87E-04
50GO:0016559: peroxisome fission7.87E-04
51GO:0006631: fatty acid metabolic process9.15E-04
52GO:0006520: cellular amino acid metabolic process1.01E-03
53GO:0009821: alkaloid biosynthetic process1.14E-03
54GO:0006098: pentose-phosphate shunt1.14E-03
55GO:0035304: regulation of protein dephosphorylation1.24E-03
56GO:0080005: photosystem stoichiometry adjustment1.24E-03
57GO:0042819: vitamin B6 biosynthetic process1.24E-03
58GO:0010541: acropetal auxin transport1.24E-03
59GO:1902326: positive regulation of chlorophyll biosynthetic process1.24E-03
60GO:0015893: drug transport1.24E-03
61GO:0006650: glycerophospholipid metabolic process1.24E-03
62GO:0008616: queuosine biosynthetic process1.24E-03
63GO:0016122: xanthophyll metabolic process1.24E-03
64GO:0010155: regulation of proton transport1.24E-03
65GO:0006729: tetrahydrobiopterin biosynthetic process1.24E-03
66GO:1903426: regulation of reactive oxygen species biosynthetic process1.24E-03
67GO:0015790: UDP-xylose transport1.24E-03
68GO:0030388: fructose 1,6-bisphosphate metabolic process1.24E-03
69GO:0010205: photoinhibition1.35E-03
70GO:0007267: cell-cell signaling1.83E-03
71GO:0006000: fructose metabolic process2.03E-03
72GO:0046168: glycerol-3-phosphate catabolic process2.03E-03
73GO:0044375: regulation of peroxisome size2.03E-03
74GO:0010160: formation of animal organ boundary2.03E-03
75GO:0046621: negative regulation of organ growth2.03E-03
76GO:0016024: CDP-diacylglycerol biosynthetic process2.09E-03
77GO:0006790: sulfur compound metabolic process2.09E-03
78GO:0010027: thylakoid membrane organization2.12E-03
79GO:0032259: methylation2.66E-03
80GO:0033014: tetrapyrrole biosynthetic process2.95E-03
81GO:0008615: pyridoxine biosynthetic process2.95E-03
82GO:0010731: protein glutathionylation2.95E-03
83GO:0043481: anthocyanin accumulation in tissues in response to UV light2.95E-03
84GO:0006072: glycerol-3-phosphate metabolic process2.95E-03
85GO:2001141: regulation of RNA biosynthetic process2.95E-03
86GO:0042823: pyridoxal phosphate biosynthetic process2.95E-03
87GO:0006020: inositol metabolic process2.95E-03
88GO:0009152: purine ribonucleotide biosynthetic process2.95E-03
89GO:0046653: tetrahydrofolate metabolic process2.95E-03
90GO:0010239: chloroplast mRNA processing2.95E-03
91GO:0046854: phosphatidylinositol phosphorylation3.01E-03
92GO:0006833: water transport3.36E-03
93GO:0007568: aging3.59E-03
94GO:0045727: positive regulation of translation3.97E-03
95GO:0010600: regulation of auxin biosynthetic process3.97E-03
96GO:0032366: intracellular sterol transport3.97E-03
97GO:0015689: molybdate ion transport3.97E-03
98GO:0019464: glycine decarboxylation via glycine cleavage system3.97E-03
99GO:0031408: oxylipin biosynthetic process4.53E-03
100GO:0016226: iron-sulfur cluster assembly4.97E-03
101GO:0019748: secondary metabolic process4.97E-03
102GO:0000304: response to singlet oxygen5.10E-03
103GO:0006465: signal peptide processing5.10E-03
104GO:0010117: photoprotection5.10E-03
105GO:0006564: L-serine biosynthetic process5.10E-03
106GO:0009904: chloroplast accumulation movement5.10E-03
107GO:0045038: protein import into chloroplast thylakoid membrane5.10E-03
108GO:0031365: N-terminal protein amino acid modification5.10E-03
109GO:0009107: lipoate biosynthetic process5.10E-03
110GO:0044550: secondary metabolite biosynthetic process5.70E-03
111GO:0006655: phosphatidylglycerol biosynthetic process6.33E-03
112GO:0060918: auxin transport6.33E-03
113GO:0009920: cell plate formation involved in plant-type cell wall biogenesis6.33E-03
114GO:0007623: circadian rhythm6.48E-03
115GO:0034220: ion transmembrane transport6.92E-03
116GO:0045926: negative regulation of growth7.65E-03
117GO:0010244: response to low fluence blue light stimulus by blue low-fluence system7.65E-03
118GO:0009903: chloroplast avoidance movement7.65E-03
119GO:0010189: vitamin E biosynthetic process7.65E-03
120GO:0009854: oxidative photosynthetic carbon pathway7.65E-03
121GO:1901259: chloroplast rRNA processing7.65E-03
122GO:0000054: ribosomal subunit export from nucleus7.65E-03
123GO:0010019: chloroplast-nucleus signaling pathway7.65E-03
124GO:0019252: starch biosynthetic process8.63E-03
125GO:1900056: negative regulation of leaf senescence9.06E-03
126GO:1900057: positive regulation of leaf senescence9.06E-03
127GO:0048437: floral organ development9.06E-03
128GO:0006400: tRNA modification9.06E-03
129GO:0050829: defense response to Gram-negative bacterium9.06E-03
130GO:0010161: red light signaling pathway9.06E-03
131GO:0009395: phospholipid catabolic process9.06E-03
132GO:0032502: developmental process9.89E-03
133GO:0006096: glycolytic process1.02E-02
134GO:0010928: regulation of auxin mediated signaling pathway1.06E-02
135GO:0009690: cytokinin metabolic process1.06E-02
136GO:0032508: DNA duplex unwinding1.06E-02
137GO:2000070: regulation of response to water deprivation1.06E-02
138GO:0042255: ribosome assembly1.06E-02
139GO:0006353: DNA-templated transcription, termination1.06E-02
140GO:0007155: cell adhesion1.06E-02
141GO:0048564: photosystem I assembly1.06E-02
142GO:0007186: G-protein coupled receptor signaling pathway1.21E-02
143GO:0006526: arginine biosynthetic process1.21E-02
144GO:0032544: plastid translation1.21E-02
145GO:0009657: plastid organization1.21E-02
146GO:0009932: cell tip growth1.21E-02
147GO:0006002: fructose 6-phosphate metabolic process1.21E-02
148GO:0071482: cellular response to light stimulus1.21E-02
149GO:0015996: chlorophyll catabolic process1.21E-02
150GO:0051865: protein autoubiquitination1.38E-02
151GO:0090305: nucleic acid phosphodiester bond hydrolysis1.38E-02
152GO:0090333: regulation of stomatal closure1.38E-02
153GO:0006783: heme biosynthetic process1.38E-02
154GO:0048507: meristem development1.38E-02
155GO:0006779: porphyrin-containing compound biosynthetic process1.55E-02
156GO:0010380: regulation of chlorophyll biosynthetic process1.55E-02
157GO:0009638: phototropism1.55E-02
158GO:0010411: xyloglucan metabolic process1.59E-02
159GO:0006535: cysteine biosynthetic process from serine1.73E-02
160GO:0009688: abscisic acid biosynthetic process1.73E-02
161GO:0043069: negative regulation of programmed cell death1.73E-02
162GO:0009641: shade avoidance1.73E-02
163GO:0018298: protein-chromophore linkage1.76E-02
164GO:0009058: biosynthetic process1.83E-02
165GO:0019684: photosynthesis, light reaction1.92E-02
166GO:0043085: positive regulation of catalytic activity1.92E-02
167GO:0006352: DNA-templated transcription, initiation1.92E-02
168GO:0000272: polysaccharide catabolic process1.92E-02
169GO:0018119: peptidyl-cysteine S-nitrosylation1.92E-02
170GO:0006415: translational termination1.92E-02
171GO:0006811: ion transport1.94E-02
172GO:0045037: protein import into chloroplast stroma2.12E-02
173GO:0008361: regulation of cell size2.12E-02
174GO:0009735: response to cytokinin2.24E-02
175GO:0016051: carbohydrate biosynthetic process2.24E-02
176GO:0009637: response to blue light2.24E-02
177GO:0009853: photorespiration2.24E-02
178GO:0006633: fatty acid biosynthetic process2.29E-02
179GO:0009785: blue light signaling pathway2.32E-02
180GO:0018107: peptidyl-threonine phosphorylation2.32E-02
181GO:0009718: anthocyanin-containing compound biosynthetic process2.32E-02
182GO:0009725: response to hormone2.32E-02
183GO:0009767: photosynthetic electron transport chain2.32E-02
184GO:0005986: sucrose biosynthetic process2.32E-02
185GO:0006413: translational initiation2.36E-02
186GO:0034605: cellular response to heat2.53E-02
187GO:0010020: chloroplast fission2.53E-02
188GO:0010223: secondary shoot formation2.53E-02
189GO:0019253: reductive pentose-phosphate cycle2.53E-02
190GO:0010540: basipetal auxin transport2.53E-02
191GO:0009266: response to temperature stimulus2.53E-02
192GO:0042343: indole glucosinolate metabolic process2.74E-02
193GO:0019853: L-ascorbic acid biosynthetic process2.74E-02
194GO:0007031: peroxisome organization2.74E-02
195GO:0010025: wax biosynthetic process2.96E-02
196GO:0019762: glucosinolate catabolic process2.96E-02
197GO:0042546: cell wall biogenesis3.00E-02
198GO:0019344: cysteine biosynthetic process3.19E-02
199GO:0005975: carbohydrate metabolic process3.20E-02
200GO:0009636: response to toxic substance3.24E-02
201GO:0042538: hyperosmotic salinity response3.62E-02
202GO:0061077: chaperone-mediated protein folding3.66E-02
203GO:0006306: DNA methylation3.66E-02
204GO:0003333: amino acid transmembrane transport3.66E-02
205GO:0048511: rhythmic process3.66E-02
206GO:0098542: defense response to other organism3.66E-02
207GO:0055085: transmembrane transport3.87E-02
208GO:0006364: rRNA processing3.88E-02
209GO:0009585: red, far-red light phototransduction3.88E-02
210GO:0010017: red or far-red light signaling pathway3.90E-02
211GO:0030433: ubiquitin-dependent ERAD pathway3.90E-02
212GO:0080092: regulation of pollen tube growth3.90E-02
213GO:0006857: oligopeptide transport4.15E-02
214GO:0006817: phosphate ion transport4.41E-02
215GO:0048443: stamen development4.41E-02
216GO:0009306: protein secretion4.41E-02
217GO:0009561: megagametogenesis4.41E-02
218GO:0042631: cellular response to water deprivation4.93E-02
RankGO TermAdjusted P value
1GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
2GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
3GO:0045550: geranylgeranyl reductase activity0.00E+00
4GO:0009673: low-affinity phosphate transmembrane transporter activity0.00E+00
5GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
6GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
7GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
8GO:0033840: NDP-glucose-starch glucosyltransferase activity0.00E+00
9GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
10GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
11GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
12GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
13GO:0016491: oxidoreductase activity2.30E-06
14GO:0004332: fructose-bisphosphate aldolase activity1.01E-05
15GO:0018708: thiol S-methyltransferase activity1.44E-05
16GO:0008934: inositol monophosphate 1-phosphatase activity1.44E-05
17GO:0052833: inositol monophosphate 4-phosphatase activity1.44E-05
18GO:0052832: inositol monophosphate 3-phosphatase activity1.44E-05
19GO:0030267: glyoxylate reductase (NADP) activity4.79E-05
20GO:0016851: magnesium chelatase activity1.01E-04
21GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.74E-04
22GO:0031072: heat shock protein binding2.25E-04
23GO:0000293: ferric-chelate reductase activity3.71E-04
24GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.71E-04
25GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.94E-04
26GO:0090422: thiamine pyrophosphate transporter activity5.75E-04
27GO:0016618: hydroxypyruvate reductase activity5.75E-04
28GO:0080132: fatty acid alpha-hydroxylase activity5.75E-04
29GO:0010242: oxygen evolving activity5.75E-04
30GO:0004325: ferrochelatase activity5.75E-04
31GO:0004328: formamidase activity5.75E-04
32GO:0042586: peptide deformylase activity5.75E-04
33GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity5.75E-04
34GO:0031957: very long-chain fatty acid-CoA ligase activity5.75E-04
35GO:0010347: L-galactose-1-phosphate phosphatase activity5.75E-04
36GO:0035671: enone reductase activity5.75E-04
37GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity5.75E-04
38GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity5.75E-04
39GO:0046906: tetrapyrrole binding5.75E-04
40GO:0030794: (S)-coclaurine-N-methyltransferase activity5.75E-04
41GO:0042802: identical protein binding5.86E-04
42GO:0019899: enzyme binding6.32E-04
43GO:0019843: rRNA binding8.82E-04
44GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water9.57E-04
45GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity1.24E-03
46GO:0008479: queuine tRNA-ribosyltransferase activity1.24E-03
47GO:0004081: bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity1.24E-03
48GO:0034432: bis(5'-adenosyl)-pentaphosphatase activity1.24E-03
49GO:0043024: ribosomal small subunit binding1.24E-03
50GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity1.24E-03
51GO:0008728: GTP diphosphokinase activity1.24E-03
52GO:0005464: UDP-xylose transmembrane transporter activity1.24E-03
53GO:0036381: pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity1.24E-03
54GO:0050017: L-3-cyanoalanine synthase activity1.24E-03
55GO:0047746: chlorophyllase activity1.24E-03
56GO:0042389: omega-3 fatty acid desaturase activity1.24E-03
57GO:0010297: heteropolysaccharide binding1.24E-03
58GO:0009977: proton motive force dependent protein transmembrane transporter activity1.24E-03
59GO:0004617: phosphoglycerate dehydrogenase activity1.24E-03
60GO:0004047: aminomethyltransferase activity1.24E-03
61GO:0015173: aromatic amino acid transmembrane transporter activity1.24E-03
62GO:0048038: quinone binding1.32E-03
63GO:0016844: strictosidine synthase activity1.35E-03
64GO:0051287: NAD binding1.38E-03
65GO:0010277: chlorophyllide a oxygenase [overall] activity2.03E-03
66GO:0005504: fatty acid binding2.03E-03
67GO:0004373: glycogen (starch) synthase activity2.03E-03
68GO:0003955: NAD(P)H dehydrogenase (quinone) activity2.03E-03
69GO:0050734: hydroxycinnamoyltransferase activity2.03E-03
70GO:0016992: lipoate synthase activity2.03E-03
71GO:0032947: protein complex scaffold2.03E-03
72GO:0016742: hydroxymethyl-, formyl- and related transferase activity2.03E-03
73GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity2.03E-03
74GO:0008864: formyltetrahydrofolate deformylase activity2.03E-03
75GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor2.03E-03
76GO:0004565: beta-galactosidase activity2.38E-03
77GO:0004375: glycine dehydrogenase (decarboxylating) activity2.95E-03
78GO:0048027: mRNA 5'-UTR binding2.95E-03
79GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides2.95E-03
80GO:0009882: blue light photoreceptor activity2.95E-03
81GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.95E-03
82GO:0008168: methyltransferase activity3.15E-03
83GO:0005528: FK506 binding3.73E-03
84GO:0051536: iron-sulfur cluster binding3.73E-03
85GO:0045430: chalcone isomerase activity3.97E-03
86GO:0009011: starch synthase activity3.97E-03
87GO:0016987: sigma factor activity3.97E-03
88GO:0015098: molybdate ion transmembrane transporter activity3.97E-03
89GO:0043495: protein anchor3.97E-03
90GO:0001053: plastid sigma factor activity3.97E-03
91GO:0005506: iron ion binding4.90E-03
92GO:0005275: amine transmembrane transporter activity5.10E-03
93GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen5.10E-03
94GO:0003727: single-stranded RNA binding5.90E-03
95GO:0035673: oligopeptide transmembrane transporter activity6.33E-03
96GO:0042578: phosphoric ester hydrolase activity6.33E-03
97GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity6.33E-03
98GO:0003755: peptidyl-prolyl cis-trans isomerase activity6.81E-03
99GO:0004871: signal transducer activity7.32E-03
100GO:0008080: N-acetyltransferase activity7.47E-03
101GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity7.65E-03
102GO:0102391: decanoate--CoA ligase activity7.65E-03
103GO:0003886: DNA (cytosine-5-)-methyltransferase activity7.65E-03
104GO:0004124: cysteine synthase activity7.65E-03
105GO:0004467: long-chain fatty acid-CoA ligase activity9.06E-03
106GO:0016762: xyloglucan:xyloglucosyl transferase activity9.25E-03
107GO:0051082: unfolded protein binding1.29E-02
108GO:0016788: hydrolase activity, acting on ester bonds1.30E-02
109GO:0015250: water channel activity1.34E-02
110GO:0071949: FAD binding1.38E-02
111GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity1.55E-02
112GO:0016798: hydrolase activity, acting on glycosyl bonds1.59E-02
113GO:0005215: transporter activity1.67E-02
114GO:0005089: Rho guanyl-nucleotide exchange factor activity1.92E-02
115GO:0015198: oligopeptide transporter activity2.12E-02
116GO:0008081: phosphoric diester hydrolase activity2.32E-02
117GO:0010329: auxin efflux transmembrane transporter activity2.32E-02
118GO:0005315: inorganic phosphate transmembrane transporter activity2.32E-02
119GO:0000155: phosphorelay sensor kinase activity2.32E-02
120GO:0003993: acid phosphatase activity2.34E-02
121GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.53E-02
122GO:0008266: poly(U) RNA binding2.53E-02
123GO:0031624: ubiquitin conjugating enzyme binding2.53E-02
124GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen2.56E-02
125GO:0004364: glutathione transferase activity2.77E-02
126GO:0004185: serine-type carboxypeptidase activity2.88E-02
127GO:0035091: phosphatidylinositol binding3.12E-02
128GO:0051537: 2 iron, 2 sulfur cluster binding3.12E-02
129GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity3.90E-02
130GO:0003690: double-stranded DNA binding4.02E-02
131GO:0022891: substrate-specific transmembrane transporter activity4.15E-02
132GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups4.73E-02
<
Gene type



Gene DE type