Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G29180

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009249: protein lipoylation0.00E+00
2GO:2000505: regulation of energy homeostasis0.00E+00
3GO:0002184: cytoplasmic translational termination0.00E+00
4GO:0017038: protein import0.00E+00
5GO:0046460: neutral lipid biosynthetic process0.00E+00
6GO:0031054: pre-miRNA processing0.00E+00
7GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
8GO:0090279: regulation of calcium ion import0.00E+00
9GO:0031116: positive regulation of microtubule polymerization0.00E+00
10GO:0090470: shoot organ boundary specification0.00E+00
11GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
12GO:0042820: vitamin B6 catabolic process0.00E+00
13GO:0042821: pyridoxal biosynthetic process0.00E+00
14GO:0042407: cristae formation0.00E+00
15GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
16GO:0009106: lipoate metabolic process0.00E+00
17GO:0090042: tubulin deacetylation0.00E+00
18GO:0015882: L-ascorbic acid transport0.00E+00
19GO:0006114: glycerol biosynthetic process0.00E+00
20GO:0071474: cellular hyperosmotic response0.00E+00
21GO:0018023: peptidyl-lysine trimethylation0.00E+00
22GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
23GO:1902458: positive regulation of stomatal opening0.00E+00
24GO:0070125: mitochondrial translational elongation0.00E+00
25GO:0010027: thylakoid membrane organization3.12E-06
26GO:0045038: protein import into chloroplast thylakoid membrane7.12E-06
27GO:1903426: regulation of reactive oxygen species biosynthetic process1.76E-05
28GO:0010207: photosystem II assembly2.06E-05
29GO:0009658: chloroplast organization6.05E-05
30GO:0015995: chlorophyll biosynthetic process6.70E-05
31GO:0071482: cellular response to light stimulus7.02E-05
32GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.22E-04
33GO:0005983: starch catabolic process2.34E-04
34GO:0045037: protein import into chloroplast stroma2.34E-04
35GO:0016123: xanthophyll biosynthetic process3.12E-04
36GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.36E-04
37GO:0010190: cytochrome b6f complex assembly4.36E-04
38GO:0048363: mucilage pectin metabolic process6.40E-04
39GO:0000023: maltose metabolic process6.40E-04
40GO:0006419: alanyl-tRNA aminoacylation6.40E-04
41GO:0000476: maturation of 4.5S rRNA6.40E-04
42GO:0009443: pyridoxal 5'-phosphate salvage6.40E-04
43GO:0000967: rRNA 5'-end processing6.40E-04
44GO:1902478: negative regulation of defense response to bacterium, incompatible interaction6.40E-04
45GO:0015671: oxygen transport6.40E-04
46GO:0043266: regulation of potassium ion transport6.40E-04
47GO:0042547: cell wall modification involved in multidimensional cell growth6.40E-04
48GO:0043686: co-translational protein modification6.40E-04
49GO:2000021: regulation of ion homeostasis6.40E-04
50GO:0010028: xanthophyll cycle6.40E-04
51GO:0015979: photosynthesis6.79E-04
52GO:0048564: photosystem I assembly9.19E-04
53GO:0006605: protein targeting9.19E-04
54GO:2000070: regulation of response to water deprivation9.19E-04
55GO:0032544: plastid translation1.12E-03
56GO:0010206: photosystem II repair1.34E-03
57GO:0019432: triglyceride biosynthetic process1.34E-03
58GO:0051262: protein tetramerization1.38E-03
59GO:0034470: ncRNA processing1.38E-03
60GO:0010198: synergid death1.38E-03
61GO:0009629: response to gravity1.38E-03
62GO:1900871: chloroplast mRNA modification1.38E-03
63GO:0007154: cell communication1.38E-03
64GO:0018026: peptidyl-lysine monomethylation1.38E-03
65GO:0000256: allantoin catabolic process1.38E-03
66GO:0071668: plant-type cell wall assembly1.38E-03
67GO:0006423: cysteinyl-tRNA aminoacylation1.38E-03
68GO:0006435: threonyl-tRNA aminoacylation1.38E-03
69GO:0080183: response to photooxidative stress1.38E-03
70GO:0001682: tRNA 5'-leader removal1.38E-03
71GO:0006782: protoporphyrinogen IX biosynthetic process1.85E-03
72GO:0009089: lysine biosynthetic process via diaminopimelate2.14E-03
73GO:0009773: photosynthetic electron transport in photosystem I2.14E-03
74GO:0006352: DNA-templated transcription, initiation2.14E-03
75GO:0006415: translational termination2.14E-03
76GO:0033591: response to L-ascorbic acid2.27E-03
77GO:0010136: ureide catabolic process2.27E-03
78GO:0010589: leaf proximal/distal pattern formation2.27E-03
79GO:0034051: negative regulation of plant-type hypersensitive response2.27E-03
80GO:0051604: protein maturation2.27E-03
81GO:0015940: pantothenate biosynthetic process2.27E-03
82GO:0001578: microtubule bundle formation2.27E-03
83GO:0045493: xylan catabolic process2.27E-03
84GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition2.27E-03
85GO:0016024: CDP-diacylglycerol biosynthetic process2.46E-03
86GO:2000012: regulation of auxin polar transport2.80E-03
87GO:0009627: systemic acquired resistance3.01E-03
88GO:0009102: biotin biosynthetic process3.30E-03
89GO:0046653: tetrahydrofolate metabolic process3.30E-03
90GO:0009052: pentose-phosphate shunt, non-oxidative branch3.30E-03
91GO:0006424: glutamyl-tRNA aminoacylation3.30E-03
92GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity3.30E-03
93GO:0006145: purine nucleobase catabolic process3.30E-03
94GO:2001141: regulation of RNA biosynthetic process3.30E-03
95GO:0010371: regulation of gibberellin biosynthetic process3.30E-03
96GO:0090351: seedling development3.54E-03
97GO:0055114: oxidation-reduction process3.59E-03
98GO:0010109: regulation of photosynthesis4.45E-03
99GO:0051322: anaphase4.45E-03
100GO:0009765: photosynthesis, light harvesting4.45E-03
101GO:0035279: mRNA cleavage involved in gene silencing by miRNA4.45E-03
102GO:0022622: root system development4.45E-03
103GO:0071483: cellular response to blue light4.45E-03
104GO:0007020: microtubule nucleation4.45E-03
105GO:0009793: embryo development ending in seed dormancy4.49E-03
106GO:0045087: innate immune response4.98E-03
107GO:0080110: sporopollenin biosynthetic process5.72E-03
108GO:0046785: microtubule polymerization5.72E-03
109GO:0046907: intracellular transport5.72E-03
110GO:0032543: mitochondrial translation5.72E-03
111GO:0016120: carotene biosynthetic process5.72E-03
112GO:0031365: N-terminal protein amino acid modification5.72E-03
113GO:0009107: lipoate biosynthetic process5.72E-03
114GO:0006631: fatty acid metabolic process6.21E-03
115GO:0009306: protein secretion6.96E-03
116GO:0006655: phosphatidylglycerol biosynthetic process7.10E-03
117GO:0016554: cytidine to uridine editing7.10E-03
118GO:0032973: amino acid export7.10E-03
119GO:0006413: translational initiation7.48E-03
120GO:0016117: carotenoid biosynthetic process7.55E-03
121GO:0009648: photoperiodism8.58E-03
122GO:0034389: lipid particle organization8.58E-03
123GO:0030488: tRNA methylation8.58E-03
124GO:0006508: proteolysis1.01E-02
125GO:0009395: phospholipid catabolic process1.02E-02
126GO:0048528: post-embryonic root development1.02E-02
127GO:0043090: amino acid import1.02E-02
128GO:0006614: SRP-dependent cotranslational protein targeting to membrane1.02E-02
129GO:0010196: nonphotochemical quenching1.02E-02
130GO:0006400: tRNA modification1.02E-02
131GO:0035196: production of miRNAs involved in gene silencing by miRNA1.02E-02
132GO:0032880: regulation of protein localization1.02E-02
133GO:0006875: cellular metal ion homeostasis1.19E-02
134GO:0000105: histidine biosynthetic process1.19E-02
135GO:0009932: cell tip growth1.36E-02
136GO:0022900: electron transport chain1.36E-02
137GO:0015996: chlorophyll catabolic process1.36E-02
138GO:0007186: G-protein coupled receptor signaling pathway1.36E-02
139GO:0009657: plastid organization1.36E-02
140GO:0017004: cytochrome complex assembly1.36E-02
141GO:0098656: anion transmembrane transport1.55E-02
142GO:0009821: alkaloid biosynthetic process1.55E-02
143GO:0080144: amino acid homeostasis1.55E-02
144GO:0006783: heme biosynthetic process1.55E-02
145GO:0010267: production of ta-siRNAs involved in RNA interference1.75E-02
146GO:0043067: regulation of programmed cell death1.75E-02
147GO:0006779: porphyrin-containing compound biosynthetic process1.75E-02
148GO:1900865: chloroplast RNA modification1.75E-02
149GO:0048354: mucilage biosynthetic process involved in seed coat development1.75E-02
150GO:0006949: syncytium formation1.95E-02
151GO:0045036: protein targeting to chloroplast1.95E-02
152GO:0016311: dephosphorylation1.97E-02
153GO:0009684: indoleacetic acid biosynthetic process2.16E-02
154GO:0010015: root morphogenesis2.16E-02
155GO:0019684: photosynthesis, light reaction2.16E-02
156GO:1903507: negative regulation of nucleic acid-templated transcription2.16E-02
157GO:0008285: negative regulation of cell proliferation2.16E-02
158GO:0018119: peptidyl-cysteine S-nitrosylation2.16E-02
159GO:0007568: aging2.40E-02
160GO:0009725: response to hormone2.61E-02
161GO:0006633: fatty acid biosynthetic process2.81E-02
162GO:0009266: response to temperature stimulus2.84E-02
163GO:0010143: cutin biosynthetic process2.84E-02
164GO:0009735: response to cytokinin2.95E-02
165GO:0019853: L-ascorbic acid biosynthetic process3.08E-02
166GO:0071732: cellular response to nitric oxide3.08E-02
167GO:0006071: glycerol metabolic process3.33E-02
168GO:0000162: tryptophan biosynthetic process3.33E-02
169GO:0006636: unsaturated fatty acid biosynthetic process3.33E-02
170GO:0006289: nucleotide-excision repair3.59E-02
171GO:0008299: isoprenoid biosynthetic process3.85E-02
172GO:0016575: histone deacetylation3.85E-02
173GO:0043622: cortical microtubule organization3.85E-02
174GO:0007017: microtubule-based process3.85E-02
175GO:0010073: meristem maintenance3.85E-02
176GO:0048511: rhythmic process4.12E-02
177GO:0061077: chaperone-mediated protein folding4.12E-02
178GO:0016114: terpenoid biosynthetic process4.12E-02
179GO:0016998: cell wall macromolecule catabolic process4.12E-02
180GO:0042538: hyperosmotic salinity response4.26E-02
181GO:0009814: defense response, incompatible interaction4.39E-02
182GO:2000022: regulation of jasmonic acid mediated signaling pathway4.39E-02
183GO:0006730: one-carbon metabolic process4.39E-02
184GO:0031348: negative regulation of defense response4.39E-02
185GO:0080092: regulation of pollen tube growth4.39E-02
186GO:0019748: secondary metabolic process4.39E-02
187GO:0005975: carbohydrate metabolic process4.45E-02
188GO:0006012: galactose metabolic process4.67E-02
189GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.67E-02
190GO:0071369: cellular response to ethylene stimulus4.67E-02
191GO:0010227: floral organ abscission4.67E-02
192GO:0010584: pollen exine formation4.95E-02
RankGO TermAdjusted P value
1GO:0036033: mediator complex binding0.00E+00
2GO:0033819: lipoyl(octanoyl) transferase activity0.00E+00
3GO:0005048: signal sequence binding0.00E+00
4GO:0004076: biotin synthase activity0.00E+00
5GO:0043136: glycerol-3-phosphatase activity0.00E+00
6GO:0000121: glycerol-1-phosphatase activity0.00E+00
7GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
8GO:0010349: L-galactose dehydrogenase activity0.00E+00
9GO:0043864: indoleacetamide hydrolase activity0.00E+00
10GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
11GO:0005363: maltose transmembrane transporter activity0.00E+00
12GO:0008115: sarcosine oxidase activity0.00E+00
13GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
14GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
15GO:0050613: delta14-sterol reductase activity0.00E+00
16GO:0043014: alpha-tubulin binding0.00E+00
17GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
18GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
19GO:0051721: protein phosphatase 2A binding0.00E+00
20GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
21GO:0042903: tubulin deacetylase activity0.00E+00
22GO:0015229: L-ascorbic acid transporter activity0.00E+00
23GO:0045435: lycopene epsilon cyclase activity0.00E+00
24GO:0003858: 3-hydroxybutyrate dehydrogenase activity0.00E+00
25GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
26GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
27GO:0070402: NADPH binding2.43E-07
28GO:0016851: magnesium chelatase activity1.15E-06
29GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.76E-05
30GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.33E-05
31GO:0030267: glyoxylate reductase (NADP) activity5.80E-05
32GO:0016149: translation release factor activity, codon specific1.22E-04
33GO:0001053: plastid sigma factor activity2.07E-04
34GO:0016987: sigma factor activity2.07E-04
35GO:0004040: amidase activity3.12E-04
36GO:0004366: glycerol-3-phosphate O-acyltransferase activity4.36E-04
37GO:0005528: FK506 binding5.15E-04
38GO:0004017: adenylate kinase activity5.78E-04
39GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity5.78E-04
40GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity6.40E-04
41GO:0005227: calcium activated cation channel activity6.40E-04
42GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity6.40E-04
43GO:0004856: xylulokinase activity6.40E-04
44GO:0009496: plastoquinol--plastocyanin reductase activity6.40E-04
45GO:0050308: sugar-phosphatase activity6.40E-04
46GO:0019203: carbohydrate phosphatase activity6.40E-04
47GO:0004813: alanine-tRNA ligase activity6.40E-04
48GO:0005080: protein kinase C binding6.40E-04
49GO:0015088: copper uptake transmembrane transporter activity6.40E-04
50GO:0004853: uroporphyrinogen decarboxylase activity6.40E-04
51GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity6.40E-04
52GO:0042586: peptide deformylase activity6.40E-04
53GO:0016784: 3-mercaptopyruvate sulfurtransferase activity6.40E-04
54GO:0005344: oxygen transporter activity6.40E-04
55GO:0004033: aldo-keto reductase (NADP) activity9.19E-04
56GO:0003747: translation release factor activity1.34E-03
57GO:0004326: tetrahydrofolylpolyglutamate synthase activity1.38E-03
58GO:0009977: proton motive force dependent protein transmembrane transporter activity1.38E-03
59GO:0016415: octanoyltransferase activity1.38E-03
60GO:0004817: cysteine-tRNA ligase activity1.38E-03
61GO:0016630: protochlorophyllide reductase activity1.38E-03
62GO:0004829: threonine-tRNA ligase activity1.38E-03
63GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity1.38E-03
64GO:0010291: carotene beta-ring hydroxylase activity1.38E-03
65GO:0017118: lipoyltransferase activity1.38E-03
66GO:0042389: omega-3 fatty acid desaturase activity1.38E-03
67GO:0015462: ATPase-coupled protein transmembrane transporter activity2.27E-03
68GO:0005504: fatty acid binding2.27E-03
69GO:0003955: NAD(P)H dehydrogenase (quinone) activity2.27E-03
70GO:0003913: DNA photolyase activity2.27E-03
71GO:0004751: ribose-5-phosphate isomerase activity2.27E-03
72GO:0004557: alpha-galactosidase activity2.27E-03
73GO:0052692: raffinose alpha-galactosidase activity2.27E-03
74GO:0031072: heat shock protein binding2.80E-03
75GO:0008266: poly(U) RNA binding3.16E-03
76GO:0035198: miRNA binding3.30E-03
77GO:0019201: nucleotide kinase activity3.30E-03
78GO:0048487: beta-tubulin binding3.30E-03
79GO:0004792: thiosulfate sulfurtransferase activity3.30E-03
80GO:0016656: monodehydroascorbate reductase (NADH) activity3.30E-03
81GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor3.30E-03
82GO:0043023: ribosomal large subunit binding3.30E-03
83GO:0008236: serine-type peptidase activity3.44E-03
84GO:0016614: oxidoreductase activity, acting on CH-OH group of donors4.43E-03
85GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor4.45E-03
86GO:0004045: aminoacyl-tRNA hydrolase activity4.45E-03
87GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds4.45E-03
88GO:0070628: proteasome binding4.45E-03
89GO:0045430: chalcone isomerase activity4.45E-03
90GO:0009044: xylan 1,4-beta-xylosidase activity4.45E-03
91GO:0046556: alpha-L-arabinofuranosidase activity4.45E-03
92GO:0016279: protein-lysine N-methyltransferase activity4.45E-03
93GO:0005525: GTP binding4.60E-03
94GO:0016788: hydrolase activity, acting on ester bonds4.64E-03
95GO:0003993: acid phosphatase activity5.27E-03
96GO:0004176: ATP-dependent peptidase activity5.34E-03
97GO:0003959: NADPH dehydrogenase activity5.72E-03
98GO:0045300: acyl-[acyl-carrier-protein] desaturase activity5.72E-03
99GO:0016773: phosphotransferase activity, alcohol group as acceptor5.72E-03
100GO:0016491: oxidoreductase activity5.73E-03
101GO:0030570: pectate lyase activity6.39E-03
102GO:2001070: starch binding7.10E-03
103GO:0004526: ribonuclease P activity7.10E-03
104GO:0031593: polyubiquitin binding7.10E-03
105GO:0042578: phosphoric ester hydrolase activity7.10E-03
106GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity7.10E-03
107GO:0016787: hydrolase activity8.43E-03
108GO:0051920: peroxiredoxin activity8.58E-03
109GO:0016832: aldehyde-lyase activity8.58E-03
110GO:0004144: diacylglycerol O-acyltransferase activity8.58E-03
111GO:0005261: cation channel activity8.58E-03
112GO:0004723: calcium-dependent protein serine/threonine phosphatase activity8.58E-03
113GO:0009881: photoreceptor activity1.02E-02
114GO:0003743: translation initiation factor activity1.05E-02
115GO:0048038: quinone binding1.09E-02
116GO:0016209: antioxidant activity1.19E-02
117GO:0008312: 7S RNA binding1.19E-02
118GO:0043022: ribosome binding1.19E-02
119GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)1.36E-02
120GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water1.36E-02
121GO:0008237: metallopeptidase activity1.41E-02
122GO:0008138: protein tyrosine/serine/threonine phosphatase activity1.55E-02
123GO:0005509: calcium ion binding1.61E-02
124GO:0005381: iron ion transmembrane transporter activity1.75E-02
125GO:0016844: strictosidine synthase activity1.75E-02
126GO:0050660: flavin adenine dinucleotide binding2.01E-02
127GO:0047372: acylglycerol lipase activity2.16E-02
128GO:0005089: Rho guanyl-nucleotide exchange factor activity2.16E-02
129GO:0008559: xenobiotic-transporting ATPase activity2.16E-02
130GO:0004222: metalloendopeptidase activity2.29E-02
131GO:0000049: tRNA binding2.38E-02
132GO:0004252: serine-type endopeptidase activity2.41E-02
133GO:0003725: double-stranded RNA binding2.61E-02
134GO:0004022: alcohol dehydrogenase (NAD) activity2.61E-02
135GO:0005315: inorganic phosphate transmembrane transporter activity2.61E-02
136GO:0003746: translation elongation factor activity2.64E-02
137GO:0008083: growth factor activity2.84E-02
138GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.84E-02
139GO:0102336: 3-oxo-arachidoyl-CoA synthase activity3.33E-02
140GO:0102337: 3-oxo-cerotoyl-CoA synthase activity3.33E-02
141GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity3.33E-02
142GO:0004407: histone deacetylase activity3.59E-02
143GO:0043130: ubiquitin binding3.59E-02
144GO:0003714: transcription corepressor activity3.59E-02
145GO:0051536: iron-sulfur cluster binding3.59E-02
146GO:0051537: 2 iron, 2 sulfur cluster binding3.68E-02
147GO:0051087: chaperone binding3.85E-02
148GO:0015079: potassium ion transmembrane transporter activity3.85E-02
149GO:0003924: GTPase activity3.95E-02
150GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity4.39E-02
151GO:0003899: DNA-directed 5'-3' RNA polymerase activity4.57E-02
152GO:0008514: organic anion transmembrane transporter activity4.95E-02
153GO:0003756: protein disulfide isomerase activity4.95E-02
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Gene type



Gene DE type