Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G28605

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
2GO:0090279: regulation of calcium ion import0.00E+00
3GO:0090470: shoot organ boundary specification0.00E+00
4GO:0032928: regulation of superoxide anion generation0.00E+00
5GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
6GO:0042820: vitamin B6 catabolic process0.00E+00
7GO:0042821: pyridoxal biosynthetic process0.00E+00
8GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
9GO:0009106: lipoate metabolic process0.00E+00
10GO:0071474: cellular hyperosmotic response0.00E+00
11GO:0006114: glycerol biosynthetic process0.00E+00
12GO:0018023: peptidyl-lysine trimethylation0.00E+00
13GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
14GO:0034337: RNA folding0.00E+00
15GO:0009249: protein lipoylation0.00E+00
16GO:0019685: photosynthesis, dark reaction0.00E+00
17GO:0002184: cytoplasmic translational termination0.00E+00
18GO:0015995: chlorophyll biosynthetic process2.87E-10
19GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly9.82E-07
20GO:0010027: thylakoid membrane organization2.41E-06
21GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway1.15E-05
22GO:0010207: photosystem II assembly1.73E-05
23GO:0048564: photosystem I assembly4.40E-05
24GO:0071482: cellular response to light stimulus6.15E-05
25GO:0006783: heme biosynthetic process8.25E-05
26GO:2001141: regulation of RNA biosynthetic process1.10E-04
27GO:0015979: photosynthesis1.33E-04
28GO:0006782: protoporphyrinogen IX biosynthetic process1.37E-04
29GO:0009658: chloroplast organization2.47E-04
30GO:0045038: protein import into chloroplast thylakoid membrane2.86E-04
31GO:0055114: oxidation-reduction process3.85E-04
32GO:0010190: cytochrome b6f complex assembly4.00E-04
33GO:1902478: negative regulation of defense response to bacterium, incompatible interaction6.04E-04
34GO:0015671: oxygen transport6.04E-04
35GO:1904966: positive regulation of vitamin E biosynthetic process6.04E-04
36GO:0043953: protein transport by the Tat complex6.04E-04
37GO:0000481: maturation of 5S rRNA6.04E-04
38GO:0015801: aromatic amino acid transport6.04E-04
39GO:1904964: positive regulation of phytol biosynthetic process6.04E-04
40GO:0065002: intracellular protein transmembrane transport6.04E-04
41GO:0043686: co-translational protein modification6.04E-04
42GO:0043087: regulation of GTPase activity6.04E-04
43GO:1902458: positive regulation of stomatal opening6.04E-04
44GO:0048363: mucilage pectin metabolic process6.04E-04
45GO:0009443: pyridoxal 5'-phosphate salvage6.04E-04
46GO:0009395: phospholipid catabolic process6.80E-04
47GO:0016559: peroxisome fission8.46E-04
48GO:0032544: plastid translation1.03E-03
49GO:1900871: chloroplast mRNA modification1.30E-03
50GO:1902326: positive regulation of chlorophyll biosynthetic process1.30E-03
51GO:0018026: peptidyl-lysine monomethylation1.30E-03
52GO:0000256: allantoin catabolic process1.30E-03
53GO:0071668: plant-type cell wall assembly1.30E-03
54GO:0006435: threonyl-tRNA aminoacylation1.30E-03
55GO:0080183: response to photooxidative stress1.30E-03
56GO:0016122: xanthophyll metabolic process1.30E-03
57GO:0006729: tetrahydrobiopterin biosynthetic process1.30E-03
58GO:1903426: regulation of reactive oxygen species biosynthetic process1.30E-03
59GO:0051262: protein tetramerization1.30E-03
60GO:0010275: NAD(P)H dehydrogenase complex assembly1.30E-03
61GO:0006779: porphyrin-containing compound biosynthetic process1.45E-03
62GO:0009773: photosynthetic electron transport in photosystem I1.97E-03
63GO:0006352: DNA-templated transcription, initiation1.97E-03
64GO:0009089: lysine biosynthetic process via diaminopimelate1.97E-03
65GO:0010136: ureide catabolic process2.14E-03
66GO:0034051: negative regulation of plant-type hypersensitive response2.14E-03
67GO:0015940: pantothenate biosynthetic process2.14E-03
68GO:0044375: regulation of peroxisome size2.14E-03
69GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition2.14E-03
70GO:0005977: glycogen metabolic process2.14E-03
71GO:0016024: CDP-diacylglycerol biosynthetic process2.25E-03
72GO:0009735: response to cytokinin2.87E-03
73GO:0009266: response to temperature stimulus2.89E-03
74GO:0010731: protein glutathionylation3.10E-03
75GO:0006424: glutamyl-tRNA aminoacylation3.10E-03
76GO:1901332: negative regulation of lateral root development3.10E-03
77GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity3.10E-03
78GO:0006145: purine nucleobase catabolic process3.10E-03
79GO:0006986: response to unfolded protein3.10E-03
80GO:0010371: regulation of gibberellin biosynthetic process3.10E-03
81GO:0006020: inositol metabolic process3.10E-03
82GO:0009102: biotin biosynthetic process3.10E-03
83GO:0051085: chaperone mediated protein folding requiring cofactor3.10E-03
84GO:0009152: purine ribonucleotide biosynthetic process3.10E-03
85GO:0046653: tetrahydrofolate metabolic process3.10E-03
86GO:0009052: pentose-phosphate shunt, non-oxidative branch3.10E-03
87GO:0033014: tetrapyrrole biosynthetic process3.10E-03
88GO:0009817: defense response to fungus, incompatible interaction3.28E-03
89GO:0022622: root system development4.19E-03
90GO:0006021: inositol biosynthetic process4.19E-03
91GO:0010021: amylopectin biosynthetic process4.19E-03
92GO:0009765: photosynthesis, light harvesting4.19E-03
93GO:0048511: rhythmic process4.89E-03
94GO:0046907: intracellular transport5.38E-03
95GO:0032543: mitochondrial translation5.38E-03
96GO:0010117: photoprotection5.38E-03
97GO:0006564: L-serine biosynthetic process5.38E-03
98GO:0016120: carotene biosynthetic process5.38E-03
99GO:0010236: plastoquinone biosynthetic process5.38E-03
100GO:0031365: N-terminal protein amino acid modification5.38E-03
101GO:0009107: lipoate biosynthetic process5.38E-03
102GO:0016123: xanthophyll biosynthetic process5.38E-03
103GO:0000304: response to singlet oxygen5.38E-03
104GO:0080110: sporopollenin biosynthetic process5.38E-03
105GO:0006810: transport6.03E-03
106GO:0009920: cell plate formation involved in plant-type cell wall biogenesis6.67E-03
107GO:0046855: inositol phosphate dephosphorylation6.67E-03
108GO:0006655: phosphatidylglycerol biosynthetic process6.67E-03
109GO:0030488: tRNA methylation8.07E-03
110GO:1901259: chloroplast rRNA processing8.07E-03
111GO:0006614: SRP-dependent cotranslational protein targeting to membrane9.56E-03
112GO:0032880: regulation of protein localization9.56E-03
113GO:0006605: protein targeting1.11E-02
114GO:0032508: DNA duplex unwinding1.11E-02
115GO:0042255: ribosome assembly1.11E-02
116GO:0006353: DNA-templated transcription, termination1.11E-02
117GO:2000070: regulation of response to water deprivation1.11E-02
118GO:0000105: histidine biosynthetic process1.11E-02
119GO:0007186: G-protein coupled receptor signaling pathway1.28E-02
120GO:0006526: arginine biosynthetic process1.28E-02
121GO:0017004: cytochrome complex assembly1.28E-02
122GO:0022900: electron transport chain1.28E-02
123GO:0015996: chlorophyll catabolic process1.28E-02
124GO:0019432: triglyceride biosynthetic process1.46E-02
125GO:0009821: alkaloid biosynthetic process1.46E-02
126GO:0010206: photosystem II repair1.46E-02
127GO:0048354: mucilage biosynthetic process involved in seed coat development1.64E-02
128GO:0016311: dephosphorylation1.81E-02
129GO:0006535: cysteine biosynthetic process from serine1.83E-02
130GO:0009688: abscisic acid biosynthetic process1.83E-02
131GO:0018298: protein-chromophore linkage1.90E-02
132GO:0008285: negative regulation of cell proliferation2.03E-02
133GO:0006415: translational termination2.03E-02
134GO:0019684: photosynthesis, light reaction2.03E-02
135GO:0007568: aging2.20E-02
136GO:0005983: starch catabolic process2.24E-02
137GO:0045037: protein import into chloroplast stroma2.24E-02
138GO:0006790: sulfur compound metabolic process2.24E-02
139GO:2000012: regulation of auxin polar transport2.45E-02
140GO:0018107: peptidyl-threonine phosphorylation2.45E-02
141GO:0009725: response to hormone2.45E-02
142GO:0006094: gluconeogenesis2.45E-02
143GO:0009767: photosynthetic electron transport chain2.45E-02
144GO:0006633: fatty acid biosynthetic process2.52E-02
145GO:0010020: chloroplast fission2.67E-02
146GO:0010143: cutin biosynthetic process2.67E-02
147GO:0007623: circadian rhythm2.83E-02
148GO:0006631: fatty acid metabolic process2.87E-02
149GO:0046854: phosphatidylinositol phosphorylation2.90E-02
150GO:0007031: peroxisome organization2.90E-02
151GO:0006636: unsaturated fatty acid biosynthetic process3.13E-02
152GO:0019762: glucosinolate catabolic process3.13E-02
153GO:0000162: tryptophan biosynthetic process3.13E-02
154GO:0006412: translation3.32E-02
155GO:0006289: nucleotide-excision repair3.37E-02
156GO:0019344: cysteine biosynthetic process3.37E-02
157GO:0006629: lipid metabolic process3.47E-02
158GO:0009636: response to toxic substance3.50E-02
159GO:0007017: microtubule-based process3.61E-02
160GO:0010073: meristem maintenance3.61E-02
161GO:0008299: isoprenoid biosynthetic process3.61E-02
162GO:0016114: terpenoid biosynthetic process3.87E-02
163GO:0003333: amino acid transmembrane transport3.87E-02
164GO:0016998: cell wall macromolecule catabolic process3.87E-02
165GO:0010431: seed maturation3.87E-02
166GO:0061077: chaperone-mediated protein folding3.87E-02
167GO:0031408: oxylipin biosynthetic process3.87E-02
168GO:0035428: hexose transmembrane transport4.12E-02
169GO:0080092: regulation of pollen tube growth4.12E-02
170GO:0019748: secondary metabolic process4.12E-02
171GO:0016226: iron-sulfur cluster assembly4.12E-02
172GO:0010017: red or far-red light signaling pathway4.12E-02
173GO:0009625: response to insect4.39E-02
174GO:0010227: floral organ abscission4.39E-02
175GO:0006457: protein folding4.52E-02
176GO:0009306: protein secretion4.65E-02
177GO:0010584: pollen exine formation4.65E-02
178GO:0016117: carotenoid biosynthetic process4.93E-02
179GO:0051028: mRNA transport4.93E-02
180GO:0008284: positive regulation of cell proliferation4.93E-02
181GO:0006096: glycolytic process4.94E-02
182GO:0042254: ribosome biogenesis4.97E-02
RankGO TermAdjusted P value
1GO:0050613: delta14-sterol reductase activity0.00E+00
2GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
3GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
4GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
5GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
6GO:0003858: 3-hydroxybutyrate dehydrogenase activity0.00E+00
7GO:0045435: lycopene epsilon cyclase activity0.00E+00
8GO:0004853: uroporphyrinogen decarboxylase activity0.00E+00
9GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
10GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity0.00E+00
11GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
12GO:0033819: lipoyl(octanoyl) transferase activity0.00E+00
13GO:0005048: signal sequence binding0.00E+00
14GO:0004076: biotin synthase activity0.00E+00
15GO:0043136: glycerol-3-phosphatase activity0.00E+00
16GO:0000121: glycerol-1-phosphatase activity0.00E+00
17GO:0019144: ADP-sugar diphosphatase activity0.00E+00
18GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
19GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
20GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
21GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
22GO:0070402: NADPH binding2.07E-07
23GO:0016851: magnesium chelatase activity9.82E-07
24GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.78E-06
25GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.58E-05
26GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.45E-05
27GO:0005528: FK506 binding3.46E-05
28GO:0030267: glyoxylate reductase (NADP) activity5.24E-05
29GO:0016491: oxidoreductase activity6.79E-05
30GO:0001053: plastid sigma factor activity1.89E-04
31GO:0016987: sigma factor activity1.89E-04
32GO:0048038: quinone binding1.92E-04
33GO:0019843: rRNA binding2.07E-04
34GO:0004366: glycerol-3-phosphate O-acyltransferase activity4.00E-04
35GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity5.32E-04
36GO:0080042: ADP-glucose pyrophosphohydrolase activity6.04E-04
37GO:0050308: sugar-phosphatase activity6.04E-04
38GO:0019203: carbohydrate phosphatase activity6.04E-04
39GO:0005080: protein kinase C binding6.04E-04
40GO:0004325: ferrochelatase activity6.04E-04
41GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity6.04E-04
42GO:0042586: peptide deformylase activity6.04E-04
43GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity6.04E-04
44GO:0016784: 3-mercaptopyruvate sulfurtransferase activity6.04E-04
45GO:0005344: oxygen transporter activity6.04E-04
46GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity6.04E-04
47GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity6.04E-04
48GO:0005227: calcium activated cation channel activity6.04E-04
49GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity6.04E-04
50GO:0004856: xylulokinase activity6.04E-04
51GO:0009496: plastoquinol--plastocyanin reductase activity6.04E-04
52GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity6.04E-04
53GO:0003993: acid phosphatase activity8.44E-04
54GO:0016788: hydrolase activity, acting on ester bonds1.05E-03
55GO:0004829: threonine-tRNA ligase activity1.30E-03
56GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity1.30E-03
57GO:0019156: isoamylase activity1.30E-03
58GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity1.30E-03
59GO:0008934: inositol monophosphate 1-phosphatase activity1.30E-03
60GO:0052833: inositol monophosphate 4-phosphatase activity1.30E-03
61GO:0050017: L-3-cyanoalanine synthase activity1.30E-03
62GO:0017118: lipoyltransferase activity1.30E-03
63GO:0042389: omega-3 fatty acid desaturase activity1.30E-03
64GO:0080041: ADP-ribose pyrophosphohydrolase activity1.30E-03
65GO:0009977: proton motive force dependent protein transmembrane transporter activity1.30E-03
66GO:0004617: phosphoglycerate dehydrogenase activity1.30E-03
67GO:0016415: octanoyltransferase activity1.30E-03
68GO:0052832: inositol monophosphate 3-phosphatase activity1.30E-03
69GO:0015173: aromatic amino acid transmembrane transporter activity1.30E-03
70GO:0016630: protochlorophyllide reductase activity1.30E-03
71GO:0034432: bis(5'-adenosyl)-pentaphosphatase activity1.30E-03
72GO:0004081: bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity1.30E-03
73GO:0003955: NAD(P)H dehydrogenase (quinone) activity2.14E-03
74GO:0003913: DNA photolyase activity2.14E-03
75GO:0004751: ribose-5-phosphate isomerase activity2.14E-03
76GO:0016742: hydroxymethyl-, formyl- and related transferase activity2.14E-03
77GO:0008864: formyltetrahydrofolate deformylase activity2.14E-03
78GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor2.14E-03
79GO:0004180: carboxypeptidase activity2.14E-03
80GO:0005504: fatty acid binding2.14E-03
81GO:0031072: heat shock protein binding2.56E-03
82GO:0008266: poly(U) RNA binding2.89E-03
83GO:0004792: thiosulfate sulfurtransferase activity3.10E-03
84GO:0016149: translation release factor activity, codon specific3.10E-03
85GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor3.10E-03
86GO:0043023: ribosomal large subunit binding3.10E-03
87GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity4.19E-03
88GO:0043495: protein anchor4.19E-03
89GO:0016279: protein-lysine N-methyltransferase activity4.19E-03
90GO:0004045: aminoacyl-tRNA hydrolase activity4.19E-03
91GO:0070628: proteasome binding4.19E-03
92GO:0045430: chalcone isomerase activity4.19E-03
93GO:0003746: translation elongation factor activity4.45E-03
94GO:0051087: chaperone binding4.45E-03
95GO:0005275: amine transmembrane transporter activity5.38E-03
96GO:0016773: phosphotransferase activity, alcohol group as acceptor5.38E-03
97GO:0008374: O-acyltransferase activity5.38E-03
98GO:0003959: NADPH dehydrogenase activity5.38E-03
99GO:0004556: alpha-amylase activity6.67E-03
100GO:0004130: cytochrome-c peroxidase activity6.67E-03
101GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity6.67E-03
102GO:2001070: starch binding6.67E-03
103GO:0004332: fructose-bisphosphate aldolase activity6.67E-03
104GO:0031593: polyubiquitin binding6.67E-03
105GO:0051287: NAD binding7.87E-03
106GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity8.07E-03
107GO:0005261: cation channel activity8.07E-03
108GO:0004124: cysteine synthase activity8.07E-03
109GO:0051920: peroxiredoxin activity8.07E-03
110GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity8.07E-03
111GO:0009881: photoreceptor activity9.56E-03
112GO:0019899: enzyme binding9.56E-03
113GO:0004033: aldo-keto reductase (NADP) activity1.11E-02
114GO:0016209: antioxidant activity1.11E-02
115GO:0008312: 7S RNA binding1.11E-02
116GO:0008173: RNA methyltransferase activity1.28E-02
117GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water1.28E-02
118GO:0008135: translation factor activity, RNA binding1.28E-02
119GO:0004601: peroxidase activity1.41E-02
120GO:0051082: unfolded protein binding1.42E-02
121GO:0071949: FAD binding1.46E-02
122GO:0008138: protein tyrosine/serine/threonine phosphatase activity1.46E-02
123GO:0003747: translation release factor activity1.46E-02
124GO:0016787: hydrolase activity1.54E-02
125GO:0030955: potassium ion binding1.64E-02
126GO:0016844: strictosidine synthase activity1.64E-02
127GO:0004743: pyruvate kinase activity1.64E-02
128GO:0008236: serine-type peptidase activity1.81E-02
129GO:0047372: acylglycerol lipase activity2.03E-02
130GO:0005089: Rho guanyl-nucleotide exchange factor activity2.03E-02
131GO:0004565: beta-galactosidase activity2.45E-02
132GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.67E-02
133GO:0008083: growth factor activity2.67E-02
134GO:0005525: GTP binding2.69E-02
135GO:0003723: RNA binding2.78E-02
136GO:0003735: structural constituent of ribosome2.93E-02
137GO:0004364: glutathione transferase activity2.99E-02
138GO:0035091: phosphatidylinositol binding3.37E-02
139GO:0051536: iron-sulfur cluster binding3.37E-02
140GO:0051537: 2 iron, 2 sulfur cluster binding3.37E-02
141GO:0004857: enzyme inhibitor activity3.37E-02
142GO:0043130: ubiquitin binding3.37E-02
143GO:0003924: GTPase activity3.47E-02
144GO:0005198: structural molecule activity3.50E-02
145GO:0003729: mRNA binding3.59E-02
146GO:0042802: identical protein binding3.82E-02
147GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity4.12E-02
148GO:0003899: DNA-directed 5'-3' RNA polymerase activity4.19E-02
149GO:0022891: substrate-specific transmembrane transporter activity4.39E-02
150GO:0030570: pectate lyase activity4.39E-02
151GO:0003727: single-stranded RNA binding4.65E-02
152GO:0003756: protein disulfide isomerase activity4.65E-02
153GO:0003824: catalytic activity4.66E-02
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Gene type



Gene DE type