Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G28550

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090697: post-embryonic plant organ morphogenesis0.00E+00
2GO:2000469: negative regulation of peroxidase activity0.00E+00
3GO:2000121: regulation of removal of superoxide radicals0.00E+00
4GO:0009690: cytokinin metabolic process1.18E-04
5GO:0007155: cell adhesion1.18E-04
6GO:0046167: glycerol-3-phosphate biosynthetic process1.60E-04
7GO:0090548: response to nitrate starvation1.60E-04
8GO:1902334: fructose export from vacuole to cytoplasm1.60E-04
9GO:0010362: negative regulation of anion channel activity by blue light1.60E-04
10GO:0015969: guanosine tetraphosphate metabolic process1.60E-04
11GO:1902025: nitrate import1.60E-04
12GO:0009641: shade avoidance2.55E-04
13GO:0010541: acropetal auxin transport3.65E-04
14GO:0010155: regulation of proton transport3.65E-04
15GO:0006650: glycerophospholipid metabolic process3.65E-04
16GO:0009637: response to blue light3.82E-04
17GO:0046621: negative regulation of organ growth5.97E-04
18GO:0046168: glycerol-3-phosphate catabolic process5.97E-04
19GO:0010160: formation of animal organ boundary5.97E-04
20GO:0009647: skotomorphogenesis8.53E-04
21GO:0043481: anthocyanin accumulation in tissues in response to UV light8.53E-04
22GO:0006072: glycerol-3-phosphate metabolic process8.53E-04
23GO:0009963: positive regulation of flavonoid biosynthetic process8.53E-04
24GO:1990019: protein storage vacuole organization8.53E-04
25GO:0019722: calcium-mediated signaling9.39E-04
26GO:0006021: inositol biosynthetic process1.13E-03
27GO:0009765: photosynthesis, light harvesting1.13E-03
28GO:0009649: entrainment of circadian clock1.13E-03
29GO:0032366: intracellular sterol transport1.13E-03
30GO:0046283: anthocyanin-containing compound metabolic process1.43E-03
31GO:0009904: chloroplast accumulation movement1.43E-03
32GO:1902183: regulation of shoot apical meristem development1.43E-03
33GO:0010158: abaxial cell fate specification1.43E-03
34GO:0034052: positive regulation of plant-type hypersensitive response1.43E-03
35GO:0010583: response to cyclopentenone1.53E-03
36GO:0032502: developmental process1.53E-03
37GO:0060918: auxin transport1.76E-03
38GO:0046855: inositol phosphate dephosphorylation1.76E-03
39GO:0007267: cell-cell signaling1.84E-03
40GO:0009903: chloroplast avoidance movement2.11E-03
41GO:0009554: megasporogenesis2.11E-03
42GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity2.11E-03
43GO:0009648: photoperiodism2.11E-03
44GO:0000122: negative regulation of transcription from RNA polymerase II promoter2.48E-03
45GO:0009645: response to low light intensity stimulus2.48E-03
46GO:0030307: positive regulation of cell growth2.48E-03
47GO:0048437: floral organ development2.48E-03
48GO:0009769: photosynthesis, light harvesting in photosystem II2.48E-03
49GO:0018298: protein-chromophore linkage2.69E-03
50GO:0043068: positive regulation of programmed cell death2.88E-03
51GO:0010218: response to far red light2.96E-03
52GO:0006811: ion transport2.96E-03
53GO:0048527: lateral root development3.10E-03
54GO:0010119: regulation of stomatal movement3.10E-03
55GO:0009932: cell tip growth3.29E-03
56GO:0051865: protein autoubiquitination3.72E-03
57GO:0090305: nucleic acid phosphodiester bond hydrolysis3.72E-03
58GO:2000024: regulation of leaf development3.72E-03
59GO:0009638: phototropism4.17E-03
60GO:0048354: mucilage biosynthetic process involved in seed coat development4.17E-03
61GO:0009416: response to light stimulus4.32E-03
62GO:0009640: photomorphogenesis4.37E-03
63GO:0010215: cellulose microfibril organization4.64E-03
64GO:0010192: mucilage biosynthetic process4.64E-03
65GO:0051555: flavonol biosynthetic process4.64E-03
66GO:0006995: cellular response to nitrogen starvation4.64E-03
67GO:0009750: response to fructose5.12E-03
68GO:0016485: protein processing5.12E-03
69GO:0008361: regulation of cell size5.62E-03
70GO:0006790: sulfur compound metabolic process5.62E-03
71GO:0016024: CDP-diacylglycerol biosynthetic process5.62E-03
72GO:0044550: secondary metabolite biosynthetic process6.01E-03
73GO:0009718: anthocyanin-containing compound biosynthetic process6.14E-03
74GO:0009767: photosynthetic electron transport chain6.14E-03
75GO:0009785: blue light signaling pathway6.14E-03
76GO:0010223: secondary shoot formation6.67E-03
77GO:0010540: basipetal auxin transport6.67E-03
78GO:0010143: cutin biosynthetic process6.67E-03
79GO:0019853: L-ascorbic acid biosynthetic process7.22E-03
80GO:0046854: phosphatidylinositol phosphorylation7.22E-03
81GO:0042343: indole glucosinolate metabolic process7.22E-03
82GO:0009825: multidimensional cell growth7.22E-03
83GO:0042753: positive regulation of circadian rhythm7.79E-03
84GO:0009944: polarity specification of adaxial/abaxial axis8.38E-03
85GO:0009768: photosynthesis, light harvesting in photosystem I8.97E-03
86GO:0007017: microtubule-based process8.97E-03
87GO:0051260: protein homooligomerization9.59E-03
88GO:0048511: rhythmic process9.59E-03
89GO:0098542: defense response to other organism9.59E-03
90GO:0019915: lipid storage9.59E-03
91GO:0009269: response to desiccation9.59E-03
92GO:0009814: defense response, incompatible interaction1.02E-02
93GO:0019748: secondary metabolic process1.02E-02
94GO:0009294: DNA mediated transformation1.09E-02
95GO:0071369: cellular response to ethylene stimulus1.09E-02
96GO:0048443: stamen development1.15E-02
97GO:0009958: positive gravitropism1.36E-02
98GO:0006520: cellular amino acid metabolic process1.36E-02
99GO:0045489: pectin biosynthetic process1.36E-02
100GO:0010154: fruit development1.36E-02
101GO:0009646: response to absence of light1.43E-02
102GO:0009749: response to glucose1.50E-02
103GO:0008654: phospholipid biosynthetic process1.50E-02
104GO:0007264: small GTPase mediated signal transduction1.65E-02
105GO:0009639: response to red or far red light1.81E-02
106GO:0010252: auxin homeostasis1.81E-02
107GO:0009409: response to cold1.98E-02
108GO:0009658: chloroplast organization2.25E-02
109GO:0048573: photoperiodism, flowering2.30E-02
110GO:0015995: chlorophyll biosynthetic process2.30E-02
111GO:0016311: dephosphorylation2.39E-02
112GO:0030244: cellulose biosynthetic process2.47E-02
113GO:0000160: phosphorelay signal transduction system2.56E-02
114GO:0007568: aging2.74E-02
115GO:0080167: response to karrikin2.79E-02
116GO:0006631: fatty acid metabolic process3.31E-02
117GO:0010114: response to red light3.51E-02
118GO:0009926: auxin polar transport3.51E-02
119GO:0009744: response to sucrose3.51E-02
120GO:0042546: cell wall biogenesis3.61E-02
121GO:0009644: response to high light intensity3.71E-02
122GO:0008643: carbohydrate transport3.71E-02
123GO:0007165: signal transduction3.73E-02
124GO:0006629: lipid metabolic process4.11E-02
125GO:0009408: response to heat4.11E-02
126GO:0009664: plant-type cell wall organization4.12E-02
127GO:0042538: hyperosmotic salinity response4.12E-02
128GO:0009585: red, far-red light phototransduction4.34E-02
129GO:0071555: cell wall organization4.42E-02
130GO:0010224: response to UV-B4.44E-02
131GO:0006857: oligopeptide transport4.55E-02
132GO:0009909: regulation of flower development4.66E-02
RankGO TermAdjusted P value
1GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
2GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
3GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity0.00E+00
4GO:0000293: ferric-chelate reductase activity4.89E-05
5GO:0004328: formamidase activity1.60E-04
6GO:0010347: L-galactose-1-phosphate phosphatase activity1.60E-04
7GO:0047259: glucomannan 4-beta-mannosyltransferase activity1.60E-04
8GO:0005353: fructose transmembrane transporter activity3.65E-04
9GO:0008728: GTP diphosphokinase activity3.65E-04
10GO:0080045: quercetin 3'-O-glucosyltransferase activity3.65E-04
11GO:0052832: inositol monophosphate 3-phosphatase activity3.65E-04
12GO:0008934: inositol monophosphate 1-phosphatase activity3.65E-04
13GO:0052833: inositol monophosphate 4-phosphatase activity3.65E-04
14GO:0048531: beta-1,3-galactosyltransferase activity3.65E-04
15GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity5.97E-04
16GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides8.53E-04
17GO:0009882: blue light photoreceptor activity8.53E-04
18GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups9.85E-04
19GO:0042277: peptide binding1.13E-03
20GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity1.76E-03
21GO:0080046: quercetin 4'-O-glucosyltransferase activity1.76E-03
22GO:0004366: glycerol-3-phosphate O-acyltransferase activity1.76E-03
23GO:0016722: oxidoreductase activity, oxidizing metal ions1.84E-03
24GO:0051753: mannan synthase activity2.11E-03
25GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity2.11E-03
26GO:0047196: long-chain-alcohol O-fatty-acyltransferase activity3.29E-03
27GO:0103095: wax ester synthase activity3.29E-03
28GO:0008515: sucrose transmembrane transporter activity5.12E-03
29GO:0000976: transcription regulatory region sequence-specific DNA binding5.62E-03
30GO:0008081: phosphoric diester hydrolase activity6.14E-03
31GO:0000155: phosphorelay sensor kinase activity6.14E-03
32GO:0010329: auxin efflux transmembrane transporter activity6.14E-03
33GO:0031624: ubiquitin conjugating enzyme binding6.67E-03
34GO:0008146: sulfotransferase activity7.22E-03
35GO:0051119: sugar transmembrane transporter activity7.22E-03
36GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen7.49E-03
37GO:0080043: quercetin 3-O-glucosyltransferase activity7.64E-03
38GO:0080044: quercetin 7-O-glucosyltransferase activity7.64E-03
39GO:0031409: pigment binding7.79E-03
40GO:0016746: transferase activity, transferring acyl groups8.62E-03
41GO:0016757: transferase activity, transferring glycosyl groups9.61E-03
42GO:0030570: pectate lyase activity1.09E-02
43GO:0005355: glucose transmembrane transporter activity1.43E-02
44GO:0010181: FMN binding1.43E-02
45GO:0019901: protein kinase binding1.50E-02
46GO:0008194: UDP-glycosyltransferase activity1.62E-02
47GO:0004518: nuclease activity1.65E-02
48GO:0016791: phosphatase activity1.81E-02
49GO:0042802: identical protein binding1.85E-02
50GO:0016491: oxidoreductase activity1.90E-02
51GO:0016168: chlorophyll binding2.13E-02
52GO:0004672: protein kinase activity2.23E-02
53GO:0020037: heme binding2.48E-02
54GO:0004693: cyclin-dependent protein serine/threonine kinase activity2.65E-02
55GO:0030145: manganese ion binding2.74E-02
56GO:0019825: oxygen binding2.86E-02
57GO:0003993: acid phosphatase activity3.02E-02
58GO:0004871: signal transducer activity3.50E-02
59GO:0004185: serine-type carboxypeptidase activity3.51E-02
60GO:0035091: phosphatidylinositol binding3.71E-02
61GO:0005198: structural molecule activity3.81E-02
62GO:0051287: NAD binding4.02E-02
63GO:0005506: iron ion binding4.33E-02
64GO:0003777: microtubule motor activity4.66E-02
65GO:0008270: zinc ion binding4.79E-02
66GO:0045735: nutrient reservoir activity4.88E-02
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Gene type



Gene DE type