Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G27060

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0031222: arabinan catabolic process0.00E+00
2GO:0042794: rRNA transcription from plastid promoter0.00E+00
3GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
4GO:0034970: histone H3-R2 methylation0.00E+00
5GO:0046719: regulation by virus of viral protein levels in host cell0.00E+00
6GO:0090627: plant epidermal cell differentiation0.00E+00
7GO:0009606: tropism0.00E+00
8GO:0090322: regulation of superoxide metabolic process0.00E+00
9GO:0034972: histone H3-R26 methylation0.00E+00
10GO:0000372: Group I intron splicing0.00E+00
11GO:1903224: regulation of endodermal cell differentiation0.00E+00
12GO:1901698: response to nitrogen compound0.00E+00
13GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
14GO:0007638: mechanosensory behavior0.00E+00
15GO:0010480: microsporocyte differentiation0.00E+00
16GO:0035884: arabinan biosynthetic process0.00E+00
17GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
18GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
19GO:0097164: ammonium ion metabolic process0.00E+00
20GO:0034971: histone H3-R17 methylation0.00E+00
21GO:0045184: establishment of protein localization0.00E+00
22GO:0015843: methylammonium transport0.00E+00
23GO:0009734: auxin-activated signaling pathway2.11E-10
24GO:0046620: regulation of organ growth5.90E-08
25GO:0042793: transcription from plastid promoter5.02E-07
26GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway7.14E-07
27GO:0009658: chloroplast organization1.14E-05
28GO:0009733: response to auxin1.32E-05
29GO:0009926: auxin polar transport1.39E-05
30GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine3.46E-05
31GO:0048437: floral organ development8.09E-05
32GO:0007389: pattern specification process1.57E-04
33GO:0000373: Group II intron splicing2.07E-04
34GO:0006468: protein phosphorylation2.08E-04
35GO:0040008: regulation of growth3.56E-04
36GO:2000038: regulation of stomatal complex development3.65E-04
37GO:0032502: developmental process5.98E-04
38GO:0009416: response to light stimulus6.87E-04
39GO:0010252: auxin homeostasis7.29E-04
40GO:0009913: epidermal cell differentiation7.46E-04
41GO:0034757: negative regulation of iron ion transport9.16E-04
42GO:0042659: regulation of cell fate specification9.16E-04
43GO:0070509: calcium ion import9.16E-04
44GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic9.16E-04
45GO:0010063: positive regulation of trichoblast fate specification9.16E-04
46GO:0090558: plant epidermis development9.16E-04
47GO:1903866: palisade mesophyll development9.16E-04
48GO:0035987: endodermal cell differentiation9.16E-04
49GO:0043609: regulation of carbon utilization9.16E-04
50GO:0006436: tryptophanyl-tRNA aminoacylation9.16E-04
51GO:0000066: mitochondrial ornithine transport9.16E-04
52GO:0006955: immune response1.25E-03
53GO:0016998: cell wall macromolecule catabolic process1.31E-03
54GO:0042255: ribosome assembly1.56E-03
55GO:0009451: RNA modification1.58E-03
56GO:0009657: plastid organization1.91E-03
57GO:2000123: positive regulation of stomatal complex development1.99E-03
58GO:1902884: positive regulation of response to oxidative stress1.99E-03
59GO:0010254: nectary development1.99E-03
60GO:0070981: L-asparagine biosynthetic process1.99E-03
61GO:0010271: regulation of chlorophyll catabolic process1.99E-03
62GO:1902326: positive regulation of chlorophyll biosynthetic process1.99E-03
63GO:0018026: peptidyl-lysine monomethylation1.99E-03
64GO:0010569: regulation of double-strand break repair via homologous recombination1.99E-03
65GO:0071497: cellular response to freezing1.99E-03
66GO:0009662: etioplast organization1.99E-03
67GO:1900033: negative regulation of trichome patterning1.99E-03
68GO:0010434: bract formation1.99E-03
69GO:1904143: positive regulation of carotenoid biosynthetic process1.99E-03
70GO:0080009: mRNA methylation1.99E-03
71GO:0009786: regulation of asymmetric cell division1.99E-03
72GO:0048439: flower morphogenesis1.99E-03
73GO:0006529: asparagine biosynthetic process1.99E-03
74GO:0000902: cell morphogenesis2.30E-03
75GO:0048829: root cap development3.20E-03
76GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic3.31E-03
77GO:0045910: negative regulation of DNA recombination3.31E-03
78GO:0080117: secondary growth3.31E-03
79GO:0090708: specification of plant organ axis polarity3.31E-03
80GO:0090391: granum assembly3.31E-03
81GO:0006000: fructose metabolic process3.31E-03
82GO:0042780: tRNA 3'-end processing3.31E-03
83GO:0001578: microtubule bundle formation3.31E-03
84GO:0071705: nitrogen compound transport3.31E-03
85GO:0009954: proximal/distal pattern formation3.31E-03
86GO:0048229: gametophyte development3.71E-03
87GO:0010582: floral meristem determinacy4.26E-03
88GO:0010071: root meristem specification4.83E-03
89GO:0051513: regulation of monopolar cell growth4.83E-03
90GO:0007231: osmosensory signaling pathway4.83E-03
91GO:0051639: actin filament network formation4.83E-03
92GO:0009800: cinnamic acid biosynthetic process4.83E-03
93GO:0010239: chloroplast mRNA processing4.83E-03
94GO:0044211: CTP salvage4.83E-03
95GO:0019048: modulation by virus of host morphology or physiology4.83E-03
96GO:0015696: ammonium transport4.83E-03
97GO:0046739: transport of virus in multicellular host4.83E-03
98GO:2000904: regulation of starch metabolic process4.83E-03
99GO:0051289: protein homotetramerization4.83E-03
100GO:0043572: plastid fission4.83E-03
101GO:0031048: chromatin silencing by small RNA4.83E-03
102GO:1902476: chloride transmembrane transport4.83E-03
103GO:0009767: photosynthetic electron transport chain4.85E-03
104GO:0010075: regulation of meristem growth4.85E-03
105GO:0071555: cell wall organization4.86E-03
106GO:0010027: thylakoid membrane organization5.28E-03
107GO:0009934: regulation of meristem structural organization5.48E-03
108GO:0010020: chloroplast fission5.48E-03
109GO:0070588: calcium ion transmembrane transport6.16E-03
110GO:0010411: xyloglucan metabolic process6.52E-03
111GO:0051764: actin crosslink formation6.54E-03
112GO:0051322: anaphase6.54E-03
113GO:0030104: water homeostasis6.54E-03
114GO:0033500: carbohydrate homeostasis6.54E-03
115GO:0071249: cellular response to nitrate6.54E-03
116GO:0072488: ammonium transmembrane transport6.54E-03
117GO:0044205: 'de novo' UMP biosynthetic process6.54E-03
118GO:0051567: histone H3-K9 methylation6.54E-03
119GO:0044206: UMP salvage6.54E-03
120GO:1901141: regulation of lignin biosynthetic process6.54E-03
121GO:0006479: protein methylation6.54E-03
122GO:0048629: trichome patterning6.54E-03
123GO:0009739: response to gibberellin6.71E-03
124GO:0048481: plant ovule development7.44E-03
125GO:0009944: polarity specification of adaxial/abaxial axis7.65E-03
126GO:0005992: trehalose biosynthetic process7.65E-03
127GO:0000160: phosphorelay signal transduction system7.93E-03
128GO:0016123: xanthophyll biosynthetic process8.43E-03
129GO:0010438: cellular response to sulfur starvation8.43E-03
130GO:0010158: abaxial cell fate specification8.43E-03
131GO:0048578: positive regulation of long-day photoperiodism, flowering8.43E-03
132GO:0032876: negative regulation of DNA endoreduplication8.43E-03
133GO:0030308: negative regulation of cell growth8.43E-03
134GO:0010375: stomatal complex patterning8.43E-03
135GO:0048497: maintenance of floral organ identity8.43E-03
136GO:0006544: glycine metabolic process8.43E-03
137GO:1902183: regulation of shoot apical meristem development8.43E-03
138GO:0006418: tRNA aminoacylation for protein translation8.47E-03
139GO:0009742: brassinosteroid mediated signaling pathway9.17E-03
140GO:0006306: DNA methylation9.32E-03
141GO:0009959: negative gravitropism1.05E-02
142GO:0006655: phosphatidylglycerol biosynthetic process1.05E-02
143GO:0048831: regulation of shoot system development1.05E-02
144GO:0016554: cytidine to uridine editing1.05E-02
145GO:0010315: auxin efflux1.05E-02
146GO:0016458: gene silencing1.05E-02
147GO:0009643: photosynthetic acclimation1.05E-02
148GO:0006559: L-phenylalanine catabolic process1.05E-02
149GO:0006206: pyrimidine nucleobase metabolic process1.05E-02
150GO:0018258: protein O-linked glycosylation via hydroxyproline1.05E-02
151GO:0006563: L-serine metabolic process1.05E-02
152GO:0010405: arabinogalactan protein metabolic process1.05E-02
153GO:0010304: PSII associated light-harvesting complex II catabolic process1.05E-02
154GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.12E-02
155GO:0010082: regulation of root meristem growth1.12E-02
156GO:0006839: mitochondrial transport1.20E-02
157GO:2000037: regulation of stomatal complex patterning1.27E-02
158GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity1.27E-02
159GO:0010310: regulation of hydrogen peroxide metabolic process1.27E-02
160GO:2000067: regulation of root morphogenesis1.27E-02
161GO:0009955: adaxial/abaxial pattern specification1.27E-02
162GO:0071470: cellular response to osmotic stress1.27E-02
163GO:0009942: longitudinal axis specification1.27E-02
164GO:0010067: procambium histogenesis1.27E-02
165GO:0048509: regulation of meristem development1.27E-02
166GO:0030488: tRNA methylation1.27E-02
167GO:1901259: chloroplast rRNA processing1.27E-02
168GO:0048653: anther development1.43E-02
169GO:0042546: cell wall biogenesis1.47E-02
170GO:0005975: carbohydrate metabolic process1.48E-02
171GO:0009790: embryo development1.50E-02
172GO:0048528: post-embryonic root development1.51E-02
173GO:0006821: chloride transport1.51E-02
174GO:0010050: vegetative phase change1.51E-02
175GO:0030307: positive regulation of cell growth1.51E-02
176GO:0010103: stomatal complex morphogenesis1.51E-02
177GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway1.51E-02
178GO:0009610: response to symbiotic fungus1.51E-02
179GO:0009741: response to brassinosteroid1.54E-02
180GO:0006342: chromatin silencing1.54E-02
181GO:0009646: response to absence of light1.66E-02
182GO:0010439: regulation of glucosinolate biosynthetic process1.76E-02
183GO:0001522: pseudouridine synthesis1.76E-02
184GO:0009850: auxin metabolic process1.76E-02
185GO:0030162: regulation of proteolysis1.76E-02
186GO:0006353: DNA-templated transcription, termination1.76E-02
187GO:0048766: root hair initiation1.76E-02
188GO:0055075: potassium ion homeostasis1.76E-02
189GO:0048825: cotyledon development1.79E-02
190GO:0009664: plant-type cell wall organization1.87E-02
191GO:0006002: fructose 6-phosphate metabolic process2.03E-02
192GO:0009827: plant-type cell wall modification2.03E-02
193GO:0006526: arginine biosynthetic process2.03E-02
194GO:0010497: plasmodesmata-mediated intercellular transport2.03E-02
195GO:0010583: response to cyclopentenone2.05E-02
196GO:0009736: cytokinin-activated signaling pathway2.05E-02
197GO:0009051: pentose-phosphate shunt, oxidative branch2.31E-02
198GO:2000024: regulation of leaf development2.31E-02
199GO:0009639: response to red or far red light2.32E-02
200GO:0009828: plant-type cell wall loosening2.32E-02
201GO:0009909: regulation of flower development2.33E-02
202GO:0007166: cell surface receptor signaling pathway2.35E-02
203GO:0008380: RNA splicing2.51E-02
204GO:0016310: phosphorylation2.52E-02
205GO:0042761: very long-chain fatty acid biosynthetic process2.60E-02
206GO:2000280: regulation of root development2.60E-02
207GO:0006349: regulation of gene expression by genetic imprinting2.60E-02
208GO:0009638: phototropism2.60E-02
209GO:0035999: tetrahydrofolate interconversion2.60E-02
210GO:1900865: chloroplast RNA modification2.60E-02
211GO:0031425: chloroplast RNA processing2.60E-02
212GO:0051607: defense response to virus2.62E-02
213GO:0006949: syncytium formation2.90E-02
214GO:0006259: DNA metabolic process2.90E-02
215GO:0031627: telomeric loop formation2.90E-02
216GO:0010048: vernalization response2.90E-02
217GO:0006535: cysteine biosynthetic process from serine2.90E-02
218GO:0030422: production of siRNA involved in RNA interference2.90E-02
219GO:0009641: shade avoidance2.90E-02
220GO:0006298: mismatch repair2.90E-02
221GO:0010015: root morphogenesis3.22E-02
222GO:0006265: DNA topological change3.22E-02
223GO:0030154: cell differentiation3.22E-02
224GO:0006816: calcium ion transport3.22E-02
225GO:0009773: photosynthetic electron transport in photosystem I3.22E-02
226GO:0009682: induced systemic resistance3.22E-02
227GO:0008361: regulation of cell size3.55E-02
228GO:0015706: nitrate transport3.55E-02
229GO:0016024: CDP-diacylglycerol biosynthetic process3.55E-02
230GO:0045037: protein import into chloroplast stroma3.55E-02
231GO:0048364: root development3.57E-02
232GO:0010588: cotyledon vascular tissue pattern formation3.89E-02
233GO:2000012: regulation of auxin polar transport3.89E-02
234GO:0010628: positive regulation of gene expression3.89E-02
235GO:0006006: glucose metabolic process3.89E-02
236GO:0010102: lateral root morphogenesis3.89E-02
237GO:0009785: blue light signaling pathway3.89E-02
238GO:0009691: cytokinin biosynthetic process3.89E-02
239GO:0010207: photosystem II assembly4.24E-02
240GO:0010143: cutin biosynthetic process4.24E-02
241GO:0006541: glutamine metabolic process4.24E-02
242GO:0010223: secondary shoot formation4.24E-02
243GO:0009058: biosynthetic process4.50E-02
244GO:0010167: response to nitrate4.59E-02
245GO:0090351: seedling development4.59E-02
246GO:0034599: cellular response to oxidative stress4.79E-02
247GO:0006071: glycerol metabolic process4.96E-02
248GO:0006833: water transport4.96E-02
RankGO TermAdjusted P value
1GO:0070009: serine-type aminopeptidase activity0.00E+00
2GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
3GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
4GO:0042834: peptidoglycan binding0.00E+00
5GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
6GO:0004056: argininosuccinate lyase activity0.00E+00
7GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity3.46E-05
8GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity3.46E-05
9GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity3.46E-05
10GO:0035241: protein-arginine omega-N monomethyltransferase activity3.46E-05
11GO:0004674: protein serine/threonine kinase activity8.20E-05
12GO:0008469: histone-arginine N-methyltransferase activity1.09E-04
13GO:0001872: (1->3)-beta-D-glucan binding2.20E-04
14GO:0003727: single-stranded RNA binding2.59E-04
15GO:0009672: auxin:proton symporter activity2.65E-04
16GO:0004519: endonuclease activity5.33E-04
17GO:0010329: auxin efflux transmembrane transporter activity5.74E-04
18GO:0004016: adenylate cyclase activity9.16E-04
19GO:0004088: carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity9.16E-04
20GO:0016274: protein-arginine N-methyltransferase activity9.16E-04
21GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity9.16E-04
22GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity9.16E-04
23GO:0005290: L-histidine transmembrane transporter activity9.16E-04
24GO:0004008: copper-exporting ATPase activity9.16E-04
25GO:0004071: aspartate-ammonia ligase activity9.16E-04
26GO:0004830: tryptophan-tRNA ligase activity9.16E-04
27GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity9.16E-04
28GO:0052381: tRNA dimethylallyltransferase activity9.16E-04
29GO:0008168: methyltransferase activity9.79E-04
30GO:0004672: protein kinase activity1.11E-03
31GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.49E-03
32GO:0016301: kinase activity1.76E-03
33GO:0004650: polygalacturonase activity1.77E-03
34GO:0008805: carbon-monoxide oxygenase activity1.99E-03
35GO:0000064: L-ornithine transmembrane transporter activity1.99E-03
36GO:0015929: hexosaminidase activity1.99E-03
37GO:0004563: beta-N-acetylhexosaminidase activity1.99E-03
38GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.99E-03
39GO:0009884: cytokinin receptor activity1.99E-03
40GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity1.99E-03
41GO:0004805: trehalose-phosphatase activity3.20E-03
42GO:0016762: xyloglucan:xyloglucosyl transferase activity3.28E-03
43GO:0003723: RNA binding3.30E-03
44GO:0070330: aromatase activity3.31E-03
45GO:0032549: ribonucleoside binding3.31E-03
46GO:0052722: fatty acid in-chain hydroxylase activity3.31E-03
47GO:0017150: tRNA dihydrouridine synthase activity3.31E-03
48GO:0045548: phenylalanine ammonia-lyase activity3.31E-03
49GO:0042781: 3'-tRNA processing endoribonuclease activity3.31E-03
50GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity3.31E-03
51GO:0016805: dipeptidase activity3.31E-03
52GO:0005034: osmosensor activity3.31E-03
53GO:0016707: gibberellin 3-beta-dioxygenase activity3.31E-03
54GO:0005089: Rho guanyl-nucleotide exchange factor activity3.71E-03
55GO:0005524: ATP binding3.94E-03
56GO:0015189: L-lysine transmembrane transporter activity4.83E-03
57GO:0015181: arginine transmembrane transporter activity4.83E-03
58GO:0035197: siRNA binding4.83E-03
59GO:0005262: calcium channel activity4.85E-03
60GO:0042973: glucan endo-1,3-beta-D-glucosidase activity5.48E-03
61GO:0016798: hydrolase activity, acting on glycosyl bonds6.52E-03
62GO:0004845: uracil phosphoribosyltransferase activity6.54E-03
63GO:0004345: glucose-6-phosphate dehydrogenase activity6.54E-03
64GO:0005253: anion channel activity6.54E-03
65GO:0019199: transmembrane receptor protein kinase activity6.54E-03
66GO:0046556: alpha-L-arabinofuranosidase activity6.54E-03
67GO:0016279: protein-lysine N-methyltransferase activity6.54E-03
68GO:0008725: DNA-3-methyladenine glycosylase activity8.43E-03
69GO:0004372: glycine hydroxymethyltransferase activity8.43E-03
70GO:0018685: alkane 1-monooxygenase activity8.43E-03
71GO:0016773: phosphotransferase activity, alcohol group as acceptor8.43E-03
72GO:0070696: transmembrane receptor protein serine/threonine kinase binding8.43E-03
73GO:0004176: ATP-dependent peptidase activity9.32E-03
74GO:0033612: receptor serine/threonine kinase binding9.32E-03
75GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors1.01E-02
76GO:2001070: starch binding1.05E-02
77GO:0030983: mismatched DNA binding1.05E-02
78GO:0004605: phosphatidate cytidylyltransferase activity1.05E-02
79GO:1990714: hydroxyproline O-galactosyltransferase activity1.05E-02
80GO:0016208: AMP binding1.05E-02
81GO:0008519: ammonium transmembrane transporter activity1.05E-02
82GO:0005247: voltage-gated chloride channel activity1.05E-02
83GO:0004124: cysteine synthase activity1.27E-02
84GO:0008195: phosphatidate phosphatase activity1.27E-02
85GO:0004849: uridine kinase activity1.27E-02
86GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity1.27E-02
87GO:0016832: aldehyde-lyase activity1.27E-02
88GO:0004656: procollagen-proline 4-dioxygenase activity1.27E-02
89GO:0019900: kinase binding1.27E-02
90GO:0004812: aminoacyl-tRNA ligase activity1.32E-02
91GO:0016829: lyase activity1.33E-02
92GO:0001085: RNA polymerase II transcription factor binding1.54E-02
93GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.73E-02
94GO:0019901: protein kinase binding1.79E-02
95GO:0008173: RNA methyltransferase activity2.03E-02
96GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity2.03E-02
97GO:0005375: copper ion transmembrane transporter activity2.03E-02
98GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity2.03E-02
99GO:0000156: phosphorelay response regulator activity2.18E-02
100GO:0008889: glycerophosphodiester phosphodiesterase activity2.31E-02
101GO:0003777: microtubule motor activity2.33E-02
102GO:0008237: metallopeptidase activity2.47E-02
103GO:0004871: signal transducer activity2.53E-02
104GO:0004673: protein histidine kinase activity2.90E-02
105GO:0003735: structural constituent of ribosome2.96E-02
106GO:0003691: double-stranded telomeric DNA binding3.22E-02
107GO:0001054: RNA polymerase I activity3.22E-02
108GO:0030247: polysaccharide binding3.27E-02
109GO:0004521: endoribonuclease activity3.55E-02
110GO:0009982: pseudouridine synthase activity3.89E-02
111GO:0003725: double-stranded RNA binding3.89E-02
112GO:0004022: alcohol dehydrogenase (NAD) activity3.89E-02
113GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism3.89E-02
114GO:0031072: heat shock protein binding3.89E-02
115GO:0000155: phosphorelay sensor kinase activity3.89E-02
116GO:0004222: metalloendopeptidase activity4.00E-02
117GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding4.19E-02
118GO:0019843: rRNA binding4.22E-02
119GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding4.94E-02
120GO:0004712: protein serine/threonine/tyrosine kinase activity5.00E-02
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Gene type



Gene DE type