Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G25900

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0071311: cellular response to acetate0.00E+00
2GO:0015843: methylammonium transport0.00E+00
3GO:0070979: protein K11-linked ubiquitination0.00E+00
4GO:0071260: cellular response to mechanical stimulus0.00E+00
5GO:0043488: regulation of mRNA stability0.00E+00
6GO:0090706: specification of plant organ position0.00E+00
7GO:0071000: response to magnetism0.00E+00
8GO:0009157: deoxyribonucleoside monophosphate biosynthetic process0.00E+00
9GO:0009583: detection of light stimulus0.00E+00
10GO:0010068: protoderm histogenesis0.00E+00
11GO:0007037: vacuolar phosphate transport0.00E+00
12GO:0007638: mechanosensory behavior0.00E+00
13GO:0009733: response to auxin7.56E-06
14GO:0009638: phototropism6.87E-05
15GO:1902183: regulation of shoot apical meristem development2.09E-04
16GO:0010158: abaxial cell fate specification2.09E-04
17GO:0006468: protein phosphorylation2.18E-04
18GO:0000066: mitochondrial ornithine transport4.95E-04
19GO:0010450: inflorescence meristem growth4.95E-04
20GO:0051171: regulation of nitrogen compound metabolic process4.95E-04
21GO:1902265: abscisic acid homeostasis4.95E-04
22GO:0046520: sphingoid biosynthetic process4.95E-04
23GO:0072387: flavin adenine dinucleotide metabolic process4.95E-04
24GO:0006264: mitochondrial DNA replication4.95E-04
25GO:0033259: plastid DNA replication4.95E-04
26GO:0009787: regulation of abscisic acid-activated signaling pathway6.32E-04
27GO:0046620: regulation of organ growth6.32E-04
28GO:0009958: positive gravitropism7.65E-04
29GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway9.08E-04
30GO:2000024: regulation of leaf development9.21E-04
31GO:0007623: circadian rhythm1.04E-03
32GO:0010343: singlet oxygen-mediated programmed cell death1.07E-03
33GO:1901529: positive regulation of anion channel activity1.07E-03
34GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole1.07E-03
35GO:0010115: regulation of abscisic acid biosynthetic process1.07E-03
36GO:1900871: chloroplast mRNA modification1.07E-03
37GO:0010617: circadian regulation of calcium ion oscillation1.07E-03
38GO:0007154: cell communication1.07E-03
39GO:0099402: plant organ development1.07E-03
40GO:1900033: negative regulation of trichome patterning1.07E-03
41GO:0080175: phragmoplast microtubule organization1.07E-03
42GO:0006423: cysteinyl-tRNA aminoacylation1.07E-03
43GO:0001736: establishment of planar polarity1.07E-03
44GO:0009786: regulation of asymmetric cell division1.07E-03
45GO:0031648: protein destabilization1.07E-03
46GO:0032502: developmental process1.08E-03
47GO:0048829: root cap development1.26E-03
48GO:0006816: calcium ion transport1.46E-03
49GO:0048367: shoot system development1.56E-03
50GO:0045165: cell fate commitment1.74E-03
51GO:0031022: nuclear migration along microfilament1.74E-03
52GO:0051127: positive regulation of actin nucleation1.74E-03
53GO:1902448: positive regulation of shade avoidance1.74E-03
54GO:0071230: cellular response to amino acid stimulus1.74E-03
55GO:0031145: anaphase-promoting complex-dependent catabolic process1.74E-03
56GO:0070475: rRNA base methylation1.74E-03
57GO:0051604: protein maturation1.74E-03
58GO:1901672: positive regulation of systemic acquired resistance1.74E-03
59GO:0016050: vesicle organization1.74E-03
60GO:0009785: blue light signaling pathway1.90E-03
61GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.52E-03
62GO:0009067: aspartate family amino acid biosynthetic process2.52E-03
63GO:0051513: regulation of monopolar cell growth2.52E-03
64GO:0007231: osmosensory signaling pathway2.52E-03
65GO:0030071: regulation of mitotic metaphase/anaphase transition2.52E-03
66GO:0051639: actin filament network formation2.52E-03
67GO:0034059: response to anoxia2.52E-03
68GO:0044211: CTP salvage2.52E-03
69GO:0048645: animal organ formation2.52E-03
70GO:0010255: glucose mediated signaling pathway2.52E-03
71GO:0015696: ammonium transport2.52E-03
72GO:0046739: transport of virus in multicellular host2.52E-03
73GO:1901332: negative regulation of lateral root development2.52E-03
74GO:0032981: mitochondrial respiratory chain complex I assembly2.52E-03
75GO:2000904: regulation of starch metabolic process2.52E-03
76GO:0006164: purine nucleotide biosynthetic process2.52E-03
77GO:0009723: response to ethylene2.91E-03
78GO:0009944: polarity specification of adaxial/abaxial axis2.97E-03
79GO:0010187: negative regulation of seed germination2.97E-03
80GO:0048629: trichome patterning3.40E-03
81GO:0051764: actin crosslink formation3.40E-03
82GO:0033500: carbohydrate homeostasis3.40E-03
83GO:0072488: ammonium transmembrane transport3.40E-03
84GO:0022622: root system development3.40E-03
85GO:1902347: response to strigolactone3.40E-03
86GO:0009902: chloroplast relocation3.40E-03
87GO:0044206: UMP salvage3.40E-03
88GO:0009165: nucleotide biosynthetic process3.40E-03
89GO:0030154: cell differentiation3.62E-03
90GO:0009734: auxin-activated signaling pathway3.63E-03
91GO:0009926: auxin polar transport4.18E-03
92GO:0040008: regulation of growth4.26E-03
93GO:0051225: spindle assembly4.36E-03
94GO:0032876: negative regulation of DNA endoreduplication4.36E-03
95GO:0010117: photoprotection4.36E-03
96GO:0046283: anthocyanin-containing compound metabolic process4.36E-03
97GO:0045038: protein import into chloroplast thylakoid membrane4.36E-03
98GO:0010405: arabinogalactan protein metabolic process5.40E-03
99GO:0009959: negative gravitropism5.40E-03
100GO:0060918: auxin transport5.40E-03
101GO:0006139: nucleobase-containing compound metabolic process5.40E-03
102GO:0045962: positive regulation of development, heterochronic5.40E-03
103GO:0009117: nucleotide metabolic process5.40E-03
104GO:1901371: regulation of leaf morphogenesis5.40E-03
105GO:0006206: pyrimidine nucleobase metabolic process5.40E-03
106GO:0018258: protein O-linked glycosylation via hydroxyproline5.40E-03
107GO:0000741: karyogamy5.40E-03
108GO:0006561: proline biosynthetic process5.40E-03
109GO:0010087: phloem or xylem histogenesis5.51E-03
110GO:0007166: cell surface receptor signaling pathway5.61E-03
111GO:0009416: response to light stimulus5.72E-03
112GO:0010182: sugar mediated signaling pathway5.94E-03
113GO:0080086: stamen filament development6.52E-03
114GO:0009648: photoperiodism6.52E-03
115GO:0010310: regulation of hydrogen peroxide metabolic process6.52E-03
116GO:0042372: phylloquinone biosynthetic process6.52E-03
117GO:0010244: response to low fluence blue light stimulus by blue low-fluence system6.52E-03
118GO:0009903: chloroplast avoidance movement6.52E-03
119GO:0030488: tRNA methylation6.52E-03
120GO:0009088: threonine biosynthetic process6.52E-03
121GO:0032880: regulation of protein localization7.71E-03
122GO:0010161: red light signaling pathway7.71E-03
123GO:0009610: response to symbiotic fungus7.71E-03
124GO:0010050: vegetative phase change7.71E-03
125GO:0051510: regulation of unidimensional cell growth7.71E-03
126GO:0009740: gibberellic acid mediated signaling pathway8.91E-03
127GO:0009658: chloroplast organization8.91E-03
128GO:0009850: auxin metabolic process8.97E-03
129GO:0009690: cytokinin metabolic process8.97E-03
130GO:0010078: maintenance of root meristem identity8.97E-03
131GO:0009704: de-etiolation8.97E-03
132GO:0032875: regulation of DNA endoreduplication8.97E-03
133GO:0042255: ribosome assembly8.97E-03
134GO:0006353: DNA-templated transcription, termination8.97E-03
135GO:0009624: response to nematode9.62E-03
136GO:0016310: phosphorylation1.01E-02
137GO:0043562: cellular response to nitrogen levels1.03E-02
138GO:0010093: specification of floral organ identity1.03E-02
139GO:0010099: regulation of photomorphogenesis1.03E-02
140GO:0006002: fructose 6-phosphate metabolic process1.03E-02
141GO:0009827: plant-type cell wall modification1.03E-02
142GO:0010100: negative regulation of photomorphogenesis1.03E-02
143GO:0010497: plasmodesmata-mediated intercellular transport1.03E-02
144GO:0006997: nucleus organization1.03E-02
145GO:0009742: brassinosteroid mediated signaling pathway1.04E-02
146GO:0010029: regulation of seed germination1.13E-02
147GO:0000902: cell morphogenesis1.17E-02
148GO:0051865: protein autoubiquitination1.17E-02
149GO:0009051: pentose-phosphate shunt, oxidative branch1.17E-02
150GO:0006783: heme biosynthetic process1.17E-02
151GO:0000373: Group II intron splicing1.17E-02
152GO:0006189: 'de novo' IMP biosynthetic process1.17E-02
153GO:0048573: photoperiodism, flowering1.26E-02
154GO:0071577: zinc II ion transmembrane transport1.32E-02
155GO:1900426: positive regulation of defense response to bacterium1.32E-02
156GO:0010018: far-red light signaling pathway1.32E-02
157GO:1900865: chloroplast RNA modification1.32E-02
158GO:0010380: regulation of chlorophyll biosynthetic process1.32E-02
159GO:0046777: protein autophosphorylation1.37E-02
160GO:0009641: shade avoidance1.47E-02
161GO:0000160: phosphorelay signal transduction system1.47E-02
162GO:0009299: mRNA transcription1.47E-02
163GO:0006535: cysteine biosynthetic process from serine1.47E-02
164GO:0009688: abscisic acid biosynthetic process1.47E-02
165GO:0010311: lateral root formation1.47E-02
166GO:0048527: lateral root development1.62E-02
167GO:0009684: indoleacetic acid biosynthetic process1.63E-02
168GO:0009089: lysine biosynthetic process via diaminopimelate1.63E-02
169GO:0009773: photosynthetic electron transport in photosystem I1.63E-02
170GO:0009750: response to fructose1.63E-02
171GO:0006415: translational termination1.63E-02
172GO:0048765: root hair cell differentiation1.63E-02
173GO:0006865: amino acid transport1.70E-02
174GO:0009637: response to blue light1.77E-02
175GO:0010582: floral meristem determinacy1.80E-02
176GO:0030036: actin cytoskeleton organization1.97E-02
177GO:0010075: regulation of meristem growth1.97E-02
178GO:0009725: response to hormone1.97E-02
179GO:0009767: photosynthetic electron transport chain1.97E-02
180GO:0030048: actin filament-based movement1.97E-02
181GO:0010588: cotyledon vascular tissue pattern formation1.97E-02
182GO:2000012: regulation of auxin polar transport1.97E-02
183GO:0010628: positive regulation of gene expression1.97E-02
184GO:0006006: glucose metabolic process1.97E-02
185GO:0006839: mitochondrial transport2.02E-02
186GO:0006631: fatty acid metabolic process2.11E-02
187GO:0048467: gynoecium development2.14E-02
188GO:0009933: meristem structural organization2.14E-02
189GO:0009640: photomorphogenesis2.29E-02
190GO:0090351: seedling development2.33E-02
191GO:0010030: positive regulation of seed germination2.33E-02
192GO:0070588: calcium ion transmembrane transport2.33E-02
193GO:0009644: response to high light intensity2.48E-02
194GO:0042753: positive regulation of circadian rhythm2.51E-02
195GO:0009833: plant-type primary cell wall biogenesis2.51E-02
196GO:0005992: trehalose biosynthetic process2.71E-02
197GO:0019344: cysteine biosynthetic process2.71E-02
198GO:0051017: actin filament bundle assembly2.71E-02
199GO:0007010: cytoskeleton organization2.71E-02
200GO:2000377: regulation of reactive oxygen species metabolic process2.71E-02
201GO:0006825: copper ion transport2.90E-02
202GO:0006418: tRNA aminoacylation for protein translation2.90E-02
203GO:0006874: cellular calcium ion homeostasis2.90E-02
204GO:0009736: cytokinin-activated signaling pathway3.09E-02
205GO:0009585: red, far-red light phototransduction3.09E-02
206GO:0003333: amino acid transmembrane transport3.11E-02
207GO:2000022: regulation of jasmonic acid mediated signaling pathway3.31E-02
208GO:0035428: hexose transmembrane transport3.31E-02
209GO:0006730: one-carbon metabolic process3.31E-02
210GO:0010082: regulation of root meristem growth3.53E-02
211GO:0009686: gibberellin biosynthetic process3.53E-02
212GO:0006355: regulation of transcription, DNA-templated3.69E-02
213GO:0010214: seed coat development3.74E-02
214GO:0019722: calcium-mediated signaling3.74E-02
215GO:0070417: cellular response to cold3.96E-02
216GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.96E-02
217GO:0008284: positive regulation of cell proliferation3.96E-02
218GO:0010118: stomatal movement4.19E-02
219GO:0042631: cellular response to water deprivation4.19E-02
220GO:0000271: polysaccharide biosynthetic process4.19E-02
221GO:0080022: primary root development4.19E-02
222GO:0042335: cuticle development4.19E-02
223GO:0008033: tRNA processing4.19E-02
224GO:0034220: ion transmembrane transport4.19E-02
225GO:0046323: glucose import4.42E-02
226GO:0045489: pectin biosynthetic process4.42E-02
227GO:0010154: fruit development4.42E-02
228GO:0010197: polar nucleus fusion4.42E-02
229GO:0042752: regulation of circadian rhythm4.65E-02
230GO:0009646: response to absence of light4.65E-02
231GO:0007018: microtubule-based movement4.65E-02
232GO:0009851: auxin biosynthetic process4.88E-02
233GO:0048825: cotyledon development4.88E-02
RankGO TermAdjusted P value
1GO:1990534: thermospermine oxidase activity0.00E+00
2GO:0019136: deoxynucleoside kinase activity0.00E+00
3GO:0010301: xanthoxin dehydrogenase activity0.00E+00
4GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity0.00E+00
5GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
6GO:0015276: ligand-gated ion channel activity0.00E+00
7GO:0004056: argininosuccinate lyase activity0.00E+00
8GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity0.00E+00
9GO:0052907: 23S rRNA (adenine(1618)-N(6))-methyltransferase activity0.00E+00
10GO:0016301: kinase activity6.25E-05
11GO:0004672: protein kinase activity1.10E-04
12GO:0004674: protein serine/threonine kinase activity1.86E-04
13GO:0000170: sphingosine hydroxylase activity4.95E-04
14GO:0050139: nicotinate-N-glucosyltransferase activity4.95E-04
15GO:0008066: glutamate receptor activity4.95E-04
16GO:0005290: L-histidine transmembrane transporter activity4.95E-04
17GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity4.95E-04
18GO:0004008: copper-exporting ATPase activity4.95E-04
19GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.95E-04
20GO:0010313: phytochrome binding4.95E-04
21GO:0004675: transmembrane receptor protein serine/threonine kinase activity9.21E-04
22GO:0043425: bHLH transcription factor binding1.07E-03
23GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity1.07E-03
24GO:0004817: cysteine-tRNA ligase activity1.07E-03
25GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.07E-03
26GO:0080097: L-tryptophan:pyruvate aminotransferase activity1.07E-03
27GO:0042284: sphingolipid delta-4 desaturase activity1.07E-03
28GO:0000064: L-ornithine transmembrane transporter activity1.07E-03
29GO:0050017: L-3-cyanoalanine synthase activity1.07E-03
30GO:0017118: lipoyltransferase activity1.07E-03
31GO:0005524: ATP binding1.20E-03
32GO:0005089: Rho guanyl-nucleotide exchange factor activity1.46E-03
33GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity1.74E-03
34GO:0070180: large ribosomal subunit rRNA binding1.74E-03
35GO:0070330: aromatase activity1.74E-03
36GO:0005262: calcium channel activity1.90E-03
37GO:0015189: L-lysine transmembrane transporter activity2.52E-03
38GO:0004072: aspartate kinase activity2.52E-03
39GO:0035529: NADH pyrophosphatase activity2.52E-03
40GO:0017172: cysteine dioxygenase activity2.52E-03
41GO:0015181: arginine transmembrane transporter activity2.52E-03
42GO:0009882: blue light photoreceptor activity2.52E-03
43GO:0004845: uracil phosphoribosyltransferase activity3.40E-03
44GO:0010011: auxin binding3.40E-03
45GO:0004345: glucose-6-phosphate dehydrogenase activity3.40E-03
46GO:0008409: 5'-3' exonuclease activity3.40E-03
47GO:0080032: methyl jasmonate esterase activity3.40E-03
48GO:0010328: auxin influx transmembrane transporter activity3.40E-03
49GO:0019199: transmembrane receptor protein kinase activity3.40E-03
50GO:0004176: ATP-dependent peptidase activity3.61E-03
51GO:0030570: pectate lyase activity4.32E-03
52GO:0016846: carbon-sulfur lyase activity4.36E-03
53GO:0018685: alkane 1-monooxygenase activity4.36E-03
54GO:0016773: phosphotransferase activity, alcohol group as acceptor4.36E-03
55GO:0043621: protein self-association4.62E-03
56GO:0008519: ammonium transmembrane transporter activity5.40E-03
57GO:1990714: hydroxyproline O-galactosyltransferase activity5.40E-03
58GO:0004709: MAP kinase kinase kinase activity5.40E-03
59GO:0016208: AMP binding5.40E-03
60GO:0016462: pyrophosphatase activity5.40E-03
61GO:0001085: RNA polymerase II transcription factor binding5.94E-03
62GO:0004124: cysteine synthase activity6.52E-03
63GO:0004849: uridine kinase activity6.52E-03
64GO:0003730: mRNA 3'-UTR binding6.52E-03
65GO:0019899: enzyme binding7.71E-03
66GO:0003872: 6-phosphofructokinase activity7.71E-03
67GO:0000156: phosphorelay response regulator activity8.38E-03
68GO:0016759: cellulose synthase activity8.92E-03
69GO:0005375: copper ion transmembrane transporter activity1.03E-02
70GO:0003747: translation release factor activity1.17E-02
71GO:0071949: FAD binding1.17E-02
72GO:0016829: lyase activity1.42E-02
73GO:0004252: serine-type endopeptidase activity1.46E-02
74GO:0004713: protein tyrosine kinase activity1.47E-02
75GO:0004805: trehalose-phosphatase activity1.47E-02
76GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding1.62E-02
77GO:0008794: arsenate reductase (glutaredoxin) activity1.63E-02
78GO:0008327: methyl-CpG binding1.63E-02
79GO:0004871: signal transducer activity1.74E-02
80GO:0004089: carbonate dehydratase activity1.97E-02
81GO:0004022: alcohol dehydrogenase (NAD) activity1.97E-02
82GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.97E-02
83GO:0008017: microtubule binding2.05E-02
84GO:0008083: growth factor activity2.14E-02
85GO:0008131: primary amine oxidase activity2.14E-02
86GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.14E-02
87GO:0003700: transcription factor activity, sequence-specific DNA binding2.22E-02
88GO:0044212: transcription regulatory region DNA binding2.24E-02
89GO:0004970: ionotropic glutamate receptor activity2.33E-02
90GO:0005217: intracellular ligand-gated ion channel activity2.33E-02
91GO:0051537: 2 iron, 2 sulfur cluster binding2.48E-02
92GO:0003887: DNA-directed DNA polymerase activity2.51E-02
93GO:0042802: identical protein binding2.61E-02
94GO:0005385: zinc ion transmembrane transporter activity2.71E-02
95GO:0005528: FK506 binding2.71E-02
96GO:0015079: potassium ion transmembrane transporter activity2.90E-02
97GO:0005345: purine nucleobase transmembrane transporter activity2.90E-02
98GO:0008324: cation transmembrane transporter activity2.90E-02
99GO:0019706: protein-cysteine S-palmitoyltransferase activity3.11E-02
100GO:0008168: methyltransferase activity3.18E-02
101GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity3.31E-02
102GO:0003777: microtubule motor activity3.42E-02
103GO:0015171: amino acid transmembrane transporter activity3.42E-02
104GO:0016760: cellulose synthase (UDP-forming) activity3.53E-02
105GO:0008514: organic anion transmembrane transporter activity3.74E-02
106GO:0003727: single-stranded RNA binding3.74E-02
107GO:0004812: aminoacyl-tRNA ligase activity3.96E-02
108GO:0016874: ligase activity4.13E-02
109GO:0008536: Ran GTPase binding4.42E-02
110GO:0005355: glucose transmembrane transporter activity4.65E-02
111GO:0010181: FMN binding4.65E-02
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Gene type



Gene DE type