Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G25480

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1903224: regulation of endodermal cell differentiation0.00E+00
2GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
3GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
4GO:0007638: mechanosensory behavior0.00E+00
5GO:0035884: arabinan biosynthetic process0.00E+00
6GO:0097164: ammonium ion metabolic process0.00E+00
7GO:0045184: establishment of protein localization0.00E+00
8GO:0006399: tRNA metabolic process0.00E+00
9GO:0015843: methylammonium transport0.00E+00
10GO:0031222: arabinan catabolic process0.00E+00
11GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
12GO:0046719: regulation by virus of viral protein levels in host cell0.00E+00
13GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
14GO:0009606: tropism0.00E+00
15GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
16GO:0090071: negative regulation of ribosome biogenesis0.00E+00
17GO:0042793: transcription from plastid promoter1.82E-09
18GO:0009451: RNA modification4.03E-09
19GO:0046620: regulation of organ growth2.81E-08
20GO:0009658: chloroplast organization4.27E-08
21GO:0009657: plastid organization3.37E-06
22GO:0009734: auxin-activated signaling pathway3.42E-05
23GO:0009828: plant-type cell wall loosening5.73E-05
24GO:0009926: auxin polar transport5.94E-05
25GO:0016123: xanthophyll biosynthetic process4.14E-04
26GO:2000067: regulation of root morphogenesis7.59E-04
27GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic7.68E-04
28GO:0010063: positive regulation of trichoblast fate specification7.68E-04
29GO:0080112: seed growth7.68E-04
30GO:0010480: microsporocyte differentiation7.68E-04
31GO:0090558: plant epidermis development7.68E-04
32GO:0043247: telomere maintenance in response to DNA damage7.68E-04
33GO:0033044: regulation of chromosome organization7.68E-04
34GO:0042371: vitamin K biosynthetic process7.68E-04
35GO:1903866: palisade mesophyll development7.68E-04
36GO:0035987: endodermal cell differentiation7.68E-04
37GO:0043609: regulation of carbon utilization7.68E-04
38GO:0006436: tryptophanyl-tRNA aminoacylation7.68E-04
39GO:0000066: mitochondrial ornithine transport7.68E-04
40GO:0050801: ion homeostasis7.68E-04
41GO:0034757: negative regulation of iron ion transport7.68E-04
42GO:0032204: regulation of telomere maintenance7.68E-04
43GO:0042659: regulation of cell fate specification7.68E-04
44GO:1905039: carboxylic acid transmembrane transport7.68E-04
45GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process7.68E-04
46GO:1905200: gibberellic acid transmembrane transport7.68E-04
47GO:0070509: calcium ion import7.68E-04
48GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process7.68E-04
49GO:0009416: response to light stimulus9.49E-04
50GO:0048437: floral organ development9.67E-04
51GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.02E-03
52GO:0009733: response to auxin1.24E-03
53GO:0007389: pattern specification process1.47E-03
54GO:0006002: fructose 6-phosphate metabolic process1.47E-03
55GO:0070981: L-asparagine biosynthetic process1.66E-03
56GO:0010271: regulation of chlorophyll catabolic process1.66E-03
57GO:0060359: response to ammonium ion1.66E-03
58GO:0048255: mRNA stabilization1.66E-03
59GO:0018026: peptidyl-lysine monomethylation1.66E-03
60GO:1902326: positive regulation of chlorophyll biosynthetic process1.66E-03
61GO:0010569: regulation of double-strand break repair via homologous recombination1.66E-03
62GO:0071497: cellular response to freezing1.66E-03
63GO:0009662: etioplast organization1.66E-03
64GO:0042325: regulation of phosphorylation1.66E-03
65GO:0009220: pyrimidine ribonucleotide biosynthetic process1.66E-03
66GO:1904143: positive regulation of carotenoid biosynthetic process1.66E-03
67GO:0080009: mRNA methylation1.66E-03
68GO:0006529: asparagine biosynthetic process1.66E-03
69GO:0009875: pollen-pistil interaction1.66E-03
70GO:2000123: positive regulation of stomatal complex development1.66E-03
71GO:0000373: Group II intron splicing1.76E-03
72GO:0042761: very long-chain fatty acid biosynthetic process2.09E-03
73GO:0006949: syncytium formation2.44E-03
74GO:0032502: developmental process2.53E-03
75GO:0010583: response to cyclopentenone2.53E-03
76GO:0006000: fructose metabolic process2.75E-03
77GO:0042780: tRNA 3'-end processing2.75E-03
78GO:0001578: microtubule bundle formation2.75E-03
79GO:0043157: response to cation stress2.75E-03
80GO:0032504: multicellular organism reproduction2.75E-03
81GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic2.75E-03
82GO:0010447: response to acidic pH2.75E-03
83GO:0080117: secondary growth2.75E-03
84GO:0090708: specification of plant organ axis polarity2.75E-03
85GO:0090391: granum assembly2.75E-03
86GO:0006518: peptide metabolic process2.75E-03
87GO:0010015: root morphogenesis2.83E-03
88GO:0009664: plant-type cell wall organization2.89E-03
89GO:0010252: auxin homeostasis2.97E-03
90GO:0040008: regulation of growth3.14E-03
91GO:0010027: thylakoid membrane organization3.73E-03
92GO:0015696: ammonium transport4.00E-03
93GO:0046739: transport of virus in multicellular host4.00E-03
94GO:2000904: regulation of starch metabolic process4.00E-03
95GO:0043572: plastid fission4.00E-03
96GO:2001141: regulation of RNA biosynthetic process4.00E-03
97GO:0007004: telomere maintenance via telomerase4.00E-03
98GO:0016556: mRNA modification4.00E-03
99GO:0010371: regulation of gibberellin biosynthetic process4.00E-03
100GO:1902476: chloride transmembrane transport4.00E-03
101GO:0010071: root meristem specification4.00E-03
102GO:0007231: osmosensory signaling pathway4.00E-03
103GO:0009800: cinnamic acid biosynthetic process4.00E-03
104GO:0010306: rhamnogalacturonan II biosynthetic process4.00E-03
105GO:0010239: chloroplast mRNA processing4.00E-03
106GO:0044211: CTP salvage4.00E-03
107GO:0010020: chloroplast fission4.18E-03
108GO:0010207: photosystem II assembly4.18E-03
109GO:0070588: calcium ion transmembrane transport4.69E-03
110GO:0006021: inositol biosynthetic process5.41E-03
111GO:0044205: 'de novo' UMP biosynthetic process5.41E-03
112GO:0006346: methylation-dependent chromatin silencing5.41E-03
113GO:0044206: UMP salvage5.41E-03
114GO:1901141: regulation of lignin biosynthetic process5.41E-03
115GO:0006479: protein methylation5.41E-03
116GO:0030104: water homeostasis5.41E-03
117GO:0051322: anaphase5.41E-03
118GO:0033500: carbohydrate homeostasis5.41E-03
119GO:2000038: regulation of stomatal complex development5.41E-03
120GO:0072488: ammonium transmembrane transport5.41E-03
121GO:0009742: brassinosteroid mediated signaling pathway6.06E-03
122GO:0009826: unidimensional cell growth6.90E-03
123GO:0009904: chloroplast accumulation movement6.96E-03
124GO:0010236: plastoquinone biosynthetic process6.96E-03
125GO:0048497: maintenance of floral organ identity6.96E-03
126GO:0006282: regulation of DNA repair6.96E-03
127GO:0009107: lipoate biosynthetic process6.96E-03
128GO:1902183: regulation of shoot apical meristem development6.96E-03
129GO:0010158: abaxial cell fate specification6.96E-03
130GO:0010375: stomatal complex patterning6.96E-03
131GO:0016998: cell wall macromolecule catabolic process7.09E-03
132GO:0006730: one-carbon metabolic process7.77E-03
133GO:0009831: plant-type cell wall modification involved in multidimensional cell growth8.49E-03
134GO:0010082: regulation of root meristem growth8.49E-03
135GO:0016554: cytidine to uridine editing8.65E-03
136GO:0010315: auxin efflux8.65E-03
137GO:0006559: L-phenylalanine catabolic process8.65E-03
138GO:0006206: pyrimidine nucleobase metabolic process8.65E-03
139GO:0018258: protein O-linked glycosylation via hydroxyproline8.65E-03
140GO:0009228: thiamine biosynthetic process8.65E-03
141GO:0010405: arabinogalactan protein metabolic process8.65E-03
142GO:0010304: PSII associated light-harvesting complex II catabolic process8.65E-03
143GO:0009959: negative gravitropism8.65E-03
144GO:0009913: epidermal cell differentiation8.65E-03
145GO:0006655: phosphatidylglycerol biosynthetic process8.65E-03
146GO:1902456: regulation of stomatal opening8.65E-03
147GO:0048831: regulation of shoot system development8.65E-03
148GO:0010114: response to red light9.89E-03
149GO:0009790: embryo development9.91E-03
150GO:0006458: 'de novo' protein folding1.05E-02
151GO:0017148: negative regulation of translation1.05E-02
152GO:0009942: longitudinal axis specification1.05E-02
153GO:0048509: regulation of meristem development1.05E-02
154GO:0042026: protein refolding1.05E-02
155GO:0009903: chloroplast avoidance movement1.05E-02
156GO:0030488: tRNA methylation1.05E-02
157GO:1901259: chloroplast rRNA processing1.05E-02
158GO:0009955: adaxial/abaxial pattern specification1.05E-02
159GO:0042372: phylloquinone biosynthetic process1.05E-02
160GO:0008033: tRNA processing1.09E-02
161GO:0048868: pollen tube development1.17E-02
162GO:0009741: response to brassinosteroid1.17E-02
163GO:0010050: vegetative phase change1.24E-02
164GO:0006400: tRNA modification1.24E-02
165GO:0030307: positive regulation of cell growth1.24E-02
166GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process1.24E-02
167GO:0010044: response to aluminum ion1.24E-02
168GO:0006955: immune response1.24E-02
169GO:0048528: post-embryonic root development1.24E-02
170GO:0007050: cell cycle arrest1.24E-02
171GO:0009772: photosynthetic electron transport in photosystem II1.24E-02
172GO:0006821: chloride transport1.24E-02
173GO:0009646: response to absence of light1.26E-02
174GO:0009850: auxin metabolic process1.45E-02
175GO:0009704: de-etiolation1.45E-02
176GO:0042255: ribosome assembly1.45E-02
177GO:0006353: DNA-templated transcription, termination1.45E-02
178GO:0048766: root hair initiation1.45E-02
179GO:0070413: trehalose metabolism in response to stress1.45E-02
180GO:0055075: potassium ion homeostasis1.45E-02
181GO:0000105: histidine biosynthetic process1.45E-02
182GO:0052543: callose deposition in cell wall1.45E-02
183GO:0048564: photosystem I assembly1.45E-02
184GO:0001522: pseudouridine synthesis1.45E-02
185GO:0009630: gravitropism1.55E-02
186GO:0009827: plant-type cell wall modification1.67E-02
187GO:0006526: arginine biosynthetic process1.67E-02
188GO:0010497: plasmodesmata-mediated intercellular transport1.67E-02
189GO:0006303: double-strand break repair via nonhomologous end joining1.67E-02
190GO:0071482: cellular response to light stimulus1.67E-02
191GO:0006098: pentose-phosphate shunt1.90E-02
192GO:0010332: response to gamma radiation1.90E-02
193GO:0000902: cell morphogenesis1.90E-02
194GO:2000024: regulation of leaf development1.90E-02
195GO:0001666: response to hypoxia2.11E-02
196GO:1900865: chloroplast RNA modification2.14E-02
197GO:2000280: regulation of root development2.14E-02
198GO:0009638: phototropism2.14E-02
199GO:0009793: embryo development ending in seed dormancy2.17E-02
200GO:0006508: proteolysis2.20E-02
201GO:0006974: cellular response to DNA damage stimulus2.36E-02
202GO:0006535: cysteine biosynthetic process from serine2.39E-02
203GO:0045036: protein targeting to chloroplast2.39E-02
204GO:0009641: shade avoidance2.39E-02
205GO:0006259: DNA metabolic process2.39E-02
206GO:0010411: xyloglucan metabolic process2.49E-02
207GO:0006352: DNA-templated transcription, initiation2.65E-02
208GO:0048229: gametophyte development2.65E-02
209GO:0015770: sucrose transport2.65E-02
210GO:0006265: DNA topological change2.65E-02
211GO:0009089: lysine biosynthetic process via diaminopimelate2.65E-02
212GO:0006816: calcium ion transport2.65E-02
213GO:0048481: plant ovule development2.76E-02
214GO:0000160: phosphorelay signal transduction system2.90E-02
215GO:0016024: CDP-diacylglycerol biosynthetic process2.92E-02
216GO:0045037: protein import into chloroplast stroma2.92E-02
217GO:0010582: floral meristem determinacy2.92E-02
218GO:0006790: sulfur compound metabolic process2.92E-02
219GO:2000012: regulation of auxin polar transport3.20E-02
220GO:0009785: blue light signaling pathway3.20E-02
221GO:0009691: cytokinin biosynthetic process3.20E-02
222GO:0010075: regulation of meristem growth3.20E-02
223GO:0006094: gluconeogenesis3.20E-02
224GO:0080167: response to karrikin3.38E-02
225GO:0006541: glutamine metabolic process3.48E-02
226GO:0009934: regulation of meristem structural organization3.48E-02
227GO:0009637: response to blue light3.50E-02
228GO:0010039: response to iron ion3.78E-02
229GO:0080188: RNA-directed DNA methylation3.78E-02
230GO:0009901: anther dehiscence3.78E-02
231GO:0046854: phosphatidylinositol phosphorylation3.78E-02
232GO:0006839: mitochondrial transport3.98E-02
233GO:0006071: glycerol metabolic process4.08E-02
234GO:0006833: water transport4.08E-02
235GO:0010025: wax biosynthetic process4.08E-02
236GO:0000027: ribosomal large subunit assembly4.39E-02
237GO:0005992: trehalose biosynthetic process4.39E-02
238GO:0019344: cysteine biosynthetic process4.39E-02
239GO:0009116: nucleoside metabolic process4.39E-02
240GO:0009944: polarity specification of adaxial/abaxial axis4.39E-02
241GO:0007623: circadian rhythm4.48E-02
242GO:0042546: cell wall biogenesis4.68E-02
243GO:0006418: tRNA aminoacylation for protein translation4.71E-02
244GO:0010073: meristem maintenance4.71E-02
245GO:0051302: regulation of cell division4.71E-02
246GO:0019953: sexual reproduction4.71E-02
RankGO TermAdjusted P value
1GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
2GO:0004056: argininosuccinate lyase activity0.00E+00
3GO:0004401: histidinol-phosphatase activity0.00E+00
4GO:0004358: glutamate N-acetyltransferase activity0.00E+00
5GO:0052834: inositol monophosphate phosphatase activity0.00E+00
6GO:0071633: dihydroceramidase activity0.00E+00
7GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
8GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
9GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
10GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
11GO:0004519: endonuclease activity2.85E-08
12GO:0003723: RNA binding1.35E-06
13GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity7.68E-04
14GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity7.68E-04
15GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity7.68E-04
16GO:0005290: L-histidine transmembrane transporter activity7.68E-04
17GO:0004071: aspartate-ammonia ligase activity7.68E-04
18GO:0004830: tryptophan-tRNA ligase activity7.68E-04
19GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity7.68E-04
20GO:0052381: tRNA dimethylallyltransferase activity7.68E-04
21GO:0010347: L-galactose-1-phosphate phosphatase activity7.68E-04
22GO:0004016: adenylate cyclase activity7.68E-04
23GO:0005227: calcium activated cation channel activity7.68E-04
24GO:1905201: gibberellin transmembrane transporter activity7.68E-04
25GO:0008836: diaminopimelate decarboxylase activity7.68E-04
26GO:0016274: protein-arginine N-methyltransferase activity7.68E-04
27GO:0042834: peptidoglycan binding7.68E-04
28GO:0004222: metalloendopeptidase activity1.11E-03
29GO:0008805: carbon-monoxide oxygenase activity1.66E-03
30GO:0008934: inositol monophosphate 1-phosphatase activity1.66E-03
31GO:0052833: inositol monophosphate 4-phosphatase activity1.66E-03
32GO:0000064: L-ornithine transmembrane transporter activity1.66E-03
33GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.66E-03
34GO:0010291: carotene beta-ring hydroxylase activity1.66E-03
35GO:0017118: lipoyltransferase activity1.66E-03
36GO:0009884: cytokinin receptor activity1.66E-03
37GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity1.66E-03
38GO:0004326: tetrahydrofolylpolyglutamate synthase activity1.66E-03
39GO:0016415: octanoyltransferase activity1.66E-03
40GO:0004047: aminomethyltransferase activity1.66E-03
41GO:0052832: inositol monophosphate 3-phosphatase activity1.66E-03
42GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.66E-03
43GO:0019843: rRNA binding1.92E-03
44GO:0009672: auxin:proton symporter activity2.09E-03
45GO:0017150: tRNA dihydrouridine synthase activity2.75E-03
46GO:0045548: phenylalanine ammonia-lyase activity2.75E-03
47GO:0042781: 3'-tRNA processing endoribonuclease activity2.75E-03
48GO:0016805: dipeptidase activity2.75E-03
49GO:0005034: osmosensor activity2.75E-03
50GO:0046524: sucrose-phosphate synthase activity2.75E-03
51GO:0070330: aromatase activity2.75E-03
52GO:0005089: Rho guanyl-nucleotide exchange factor activity2.83E-03
53GO:0008237: metallopeptidase activity3.21E-03
54GO:0010329: auxin efflux transmembrane transporter activity3.70E-03
55GO:0005262: calcium channel activity3.70E-03
56GO:0009982: pseudouridine synthase activity3.70E-03
57GO:0015181: arginine transmembrane transporter activity4.00E-03
58GO:0043023: ribosomal large subunit binding4.00E-03
59GO:0008508: bile acid:sodium symporter activity4.00E-03
60GO:0001872: (1->3)-beta-D-glucan binding4.00E-03
61GO:0015189: L-lysine transmembrane transporter activity4.00E-03
62GO:0009678: hydrogen-translocating pyrophosphatase activity4.00E-03
63GO:0005253: anion channel activity5.41E-03
64GO:0046556: alpha-L-arabinofuranosidase activity5.41E-03
65GO:0004659: prenyltransferase activity5.41E-03
66GO:0016279: protein-lysine N-methyltransferase activity5.41E-03
67GO:0001053: plastid sigma factor activity5.41E-03
68GO:0004845: uracil phosphoribosyltransferase activity5.41E-03
69GO:0016987: sigma factor activity5.41E-03
70GO:0005275: amine transmembrane transporter activity6.96E-03
71GO:0018685: alkane 1-monooxygenase activity6.96E-03
72GO:0016773: phosphotransferase activity, alcohol group as acceptor6.96E-03
73GO:0070696: transmembrane receptor protein serine/threonine kinase binding6.96E-03
74GO:0008725: DNA-3-methyladenine glycosylase activity6.96E-03
75GO:0004176: ATP-dependent peptidase activity7.09E-03
76GO:0030570: pectate lyase activity8.49E-03
77GO:0008519: ammonium transmembrane transporter activity8.65E-03
78GO:0005247: voltage-gated chloride channel activity8.65E-03
79GO:2001070: starch binding8.65E-03
80GO:0004605: phosphatidate cytidylyltransferase activity8.65E-03
81GO:1990714: hydroxyproline O-galactosyltransferase activity8.65E-03
82GO:0004332: fructose-bisphosphate aldolase activity8.65E-03
83GO:0003727: single-stranded RNA binding9.24E-03
84GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity1.05E-02
85GO:0004656: procollagen-proline 4-dioxygenase activity1.05E-02
86GO:0019900: kinase binding1.05E-02
87GO:0004124: cysteine synthase activity1.05E-02
88GO:0008195: phosphatidate phosphatase activity1.05E-02
89GO:0004849: uridine kinase activity1.05E-02
90GO:0001085: RNA polymerase II transcription factor binding1.17E-02
91GO:0003872: 6-phosphofructokinase activity1.24E-02
92GO:0004427: inorganic diphosphatase activity1.24E-02
93GO:0019901: protein kinase binding1.36E-02
94GO:0016762: xyloglucan:xyloglucosyl transferase activity1.45E-02
95GO:0003777: microtubule motor activity1.65E-02
96GO:0008173: RNA methyltransferase activity1.67E-02
97GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.67E-02
98GO:0005215: transporter activity1.82E-02
99GO:0008889: glycerophosphodiester phosphodiesterase activity1.90E-02
100GO:0004673: protein histidine kinase activity2.39E-02
101GO:0004805: trehalose-phosphatase activity2.39E-02
102GO:0016798: hydrolase activity, acting on glycosyl bonds2.49E-02
103GO:0016788: hydrolase activity, acting on ester bonds2.53E-02
104GO:0044183: protein binding involved in protein folding2.65E-02
105GO:0008515: sucrose transmembrane transporter activity2.65E-02
106GO:0003682: chromatin binding2.68E-02
107GO:0015238: drug transmembrane transporter activity2.90E-02
108GO:0000976: transcription regulatory region sequence-specific DNA binding2.92E-02
109GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding3.19E-02
110GO:0004022: alcohol dehydrogenase (NAD) activity3.20E-02
111GO:0004089: carbonate dehydratase activity3.20E-02
112GO:0031072: heat shock protein binding3.20E-02
113GO:0000155: phosphorelay sensor kinase activity3.20E-02
114GO:0019888: protein phosphatase regulator activity3.20E-02
115GO:0016829: lyase activity3.32E-02
116GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors3.50E-02
117GO:0003993: acid phosphatase activity3.66E-02
118GO:0051119: sugar transmembrane transporter activity3.78E-02
119GO:0052689: carboxylic ester hydrolase activity3.91E-02
120GO:0051539: 4 iron, 4 sulfur cluster binding3.98E-02
121GO:0031418: L-ascorbic acid binding4.39E-02
122GO:0005345: purine nucleobase transmembrane transporter activity4.71E-02
123GO:0043424: protein histidine kinase binding4.71E-02
124GO:0046872: metal ion binding4.77E-02
125GO:0043621: protein self-association4.86E-02
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Gene type



Gene DE type