Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G24290

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006399: tRNA metabolic process0.00E+00
2GO:0015843: methylammonium transport0.00E+00
3GO:0031222: arabinan catabolic process0.00E+00
4GO:0070979: protein K11-linked ubiquitination0.00E+00
5GO:0046719: regulation by virus of viral protein levels in host cell0.00E+00
6GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
7GO:0090071: negative regulation of ribosome biogenesis0.00E+00
8GO:0009606: tropism0.00E+00
9GO:1903224: regulation of endodermal cell differentiation0.00E+00
10GO:0007638: mechanosensory behavior0.00E+00
11GO:0035884: arabinan biosynthetic process0.00E+00
12GO:0097164: ammonium ion metabolic process0.00E+00
13GO:0045184: establishment of protein localization0.00E+00
14GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
15GO:0009734: auxin-activated signaling pathway3.74E-11
16GO:0046620: regulation of organ growth1.21E-10
17GO:0009733: response to auxin2.17E-09
18GO:0009658: chloroplast organization1.27E-07
19GO:0040008: regulation of growth1.49E-06
20GO:0009926: auxin polar transport2.67E-06
21GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.69E-05
22GO:0009657: plastid organization7.48E-05
23GO:0000373: Group II intron splicing1.00E-04
24GO:0032502: developmental process2.68E-04
25GO:0010020: chloroplast fission3.51E-04
26GO:0042793: transcription from plastid promoter4.56E-04
27GO:2000067: regulation of root morphogenesis6.04E-04
28GO:0010480: microsporocyte differentiation6.58E-04
29GO:2000021: regulation of ion homeostasis6.58E-04
30GO:0035987: endodermal cell differentiation6.58E-04
31GO:0043609: regulation of carbon utilization6.58E-04
32GO:0006436: tryptophanyl-tRNA aminoacylation6.58E-04
33GO:0000066: mitochondrial ornithine transport6.58E-04
34GO:0050801: ion homeostasis6.58E-04
35GO:0006177: GMP biosynthetic process6.58E-04
36GO:0042659: regulation of cell fate specification6.58E-04
37GO:0090558: plant epidermis development6.58E-04
38GO:0043266: regulation of potassium ion transport6.58E-04
39GO:0009742: brassinosteroid mediated signaling pathway9.42E-04
40GO:0042255: ribosome assembly9.57E-04
41GO:0007389: pattern specification process1.16E-03
42GO:0006002: fructose 6-phosphate metabolic process1.16E-03
43GO:1904143: positive regulation of carotenoid biosynthetic process1.42E-03
44GO:0006529: asparagine biosynthetic process1.42E-03
45GO:2000123: positive regulation of stomatal complex development1.42E-03
46GO:1902326: positive regulation of chlorophyll biosynthetic process1.42E-03
47GO:0070981: L-asparagine biosynthetic process1.42E-03
48GO:0018026: peptidyl-lysine monomethylation1.42E-03
49GO:0071497: cellular response to freezing1.42E-03
50GO:0042761: very long-chain fatty acid biosynthetic process1.65E-03
51GO:0010252: auxin homeostasis2.19E-03
52GO:0010015: root morphogenesis2.24E-03
53GO:0009451: RNA modification2.33E-03
54GO:0006760: folic acid-containing compound metabolic process2.34E-03
55GO:0010447: response to acidic pH2.34E-03
56GO:0051127: positive regulation of actin nucleation2.34E-03
57GO:0090708: specification of plant organ axis polarity2.34E-03
58GO:0006954: inflammatory response2.34E-03
59GO:0006000: fructose metabolic process2.34E-03
60GO:0031145: anaphase-promoting complex-dependent catabolic process2.34E-03
61GO:0009767: photosynthetic electron transport chain2.92E-03
62GO:0071555: cell wall organization3.17E-03
63GO:0007275: multicellular organism development3.18E-03
64GO:0016556: mRNA modification3.40E-03
65GO:0043572: plastid fission3.40E-03
66GO:2001141: regulation of RNA biosynthetic process3.40E-03
67GO:1902476: chloride transmembrane transport3.40E-03
68GO:0007231: osmosensory signaling pathway3.40E-03
69GO:0030071: regulation of mitotic metaphase/anaphase transition3.40E-03
70GO:0051639: actin filament network formation3.40E-03
71GO:0010239: chloroplast mRNA processing3.40E-03
72GO:0009800: cinnamic acid biosynthetic process3.40E-03
73GO:0044211: CTP salvage3.40E-03
74GO:0015696: ammonium transport3.40E-03
75GO:0046739: transport of virus in multicellular host3.40E-03
76GO:2000904: regulation of starch metabolic process3.40E-03
77GO:0006346: methylation-dependent chromatin silencing4.58E-03
78GO:1901141: regulation of lignin biosynthetic process4.58E-03
79GO:0005992: trehalose biosynthetic process4.58E-03
80GO:0051764: actin crosslink formation4.58E-03
81GO:0015846: polyamine transport4.58E-03
82GO:0030104: water homeostasis4.58E-03
83GO:0072488: ammonium transmembrane transport4.58E-03
84GO:0033500: carbohydrate homeostasis4.58E-03
85GO:2000038: regulation of stomatal complex development4.58E-03
86GO:0046656: folic acid biosynthetic process4.58E-03
87GO:0044206: UMP salvage4.58E-03
88GO:0009904: chloroplast accumulation movement5.89E-03
89GO:0009107: lipoate biosynthetic process5.89E-03
90GO:1902183: regulation of shoot apical meristem development5.89E-03
91GO:0016123: xanthophyll biosynthetic process5.89E-03
92GO:0010438: cellular response to sulfur starvation5.89E-03
93GO:0010158: abaxial cell fate specification5.89E-03
94GO:0032876: negative regulation of DNA endoreduplication5.89E-03
95GO:0010375: stomatal complex patterning5.89E-03
96GO:0006544: glycine metabolic process5.89E-03
97GO:0006839: mitochondrial transport6.21E-03
98GO:0010082: regulation of root meristem growth6.67E-03
99GO:0006563: L-serine metabolic process7.31E-03
100GO:0010405: arabinogalactan protein metabolic process7.31E-03
101GO:0010304: PSII associated light-harvesting complex II catabolic process7.31E-03
102GO:0009959: negative gravitropism7.31E-03
103GO:0006655: phosphatidylglycerol biosynthetic process7.31E-03
104GO:0010315: auxin efflux7.31E-03
105GO:0006559: L-phenylalanine catabolic process7.31E-03
106GO:0006206: pyrimidine nucleobase metabolic process7.31E-03
107GO:0018258: protein O-linked glycosylation via hydroxyproline7.31E-03
108GO:0009228: thiamine biosynthetic process7.31E-03
109GO:0008033: tRNA processing8.53E-03
110GO:0009903: chloroplast avoidance movement8.84E-03
111GO:0030488: tRNA methylation8.84E-03
112GO:0080086: stamen filament development8.84E-03
113GO:0009955: adaxial/abaxial pattern specification8.84E-03
114GO:0017148: negative regulation of translation8.84E-03
115GO:0009942: longitudinal axis specification8.84E-03
116GO:0046654: tetrahydrofolate biosynthetic process8.84E-03
117GO:1901259: chloroplast rRNA processing8.84E-03
118GO:0007623: circadian rhythm8.88E-03
119GO:0009741: response to brassinosteroid9.20E-03
120GO:0009646: response to absence of light9.91E-03
121GO:0030307: positive regulation of cell growth1.05E-02
122GO:0010161: red light signaling pathway1.05E-02
123GO:0009610: response to symbiotic fungus1.05E-02
124GO:0007050: cell cycle arrest1.05E-02
125GO:0006821: chloride transport1.05E-02
126GO:0010050: vegetative phase change1.05E-02
127GO:0048437: floral organ development1.05E-02
128GO:0009739: response to gibberellin1.05E-02
129GO:0006400: tRNA modification1.05E-02
130GO:0008380: RNA splicing1.16E-02
131GO:0032875: regulation of DNA endoreduplication1.22E-02
132GO:0070413: trehalose metabolism in response to stress1.22E-02
133GO:0055075: potassium ion homeostasis1.22E-02
134GO:0010583: response to cyclopentenone1.22E-02
135GO:0010439: regulation of glucosinolate biosynthetic process1.22E-02
136GO:0001522: pseudouridine synthesis1.22E-02
137GO:0009850: auxin metabolic process1.22E-02
138GO:0009704: de-etiolation1.22E-02
139GO:0006353: DNA-templated transcription, termination1.22E-02
140GO:0048766: root hair initiation1.22E-02
141GO:0009416: response to light stimulus1.34E-02
142GO:0009828: plant-type cell wall loosening1.39E-02
143GO:0010099: regulation of photomorphogenesis1.41E-02
144GO:0071482: cellular response to light stimulus1.41E-02
145GO:0009827: plant-type cell wall modification1.41E-02
146GO:0010497: plasmodesmata-mediated intercellular transport1.41E-02
147GO:0010100: negative regulation of photomorphogenesis1.41E-02
148GO:0006526: arginine biosynthetic process1.41E-02
149GO:0009740: gibberellic acid mediated signaling pathway1.55E-02
150GO:0000902: cell morphogenesis1.60E-02
151GO:0009051: pentose-phosphate shunt, oxidative branch1.60E-02
152GO:2000024: regulation of leaf development1.60E-02
153GO:0006783: heme biosynthetic process1.60E-02
154GO:0008202: steroid metabolic process1.80E-02
155GO:0009638: phototropism1.80E-02
156GO:0035999: tetrahydrofolate interconversion1.80E-02
157GO:2000280: regulation of root development1.80E-02
158GO:0031425: chloroplast RNA processing1.80E-02
159GO:0006974: cellular response to DNA damage stimulus1.85E-02
160GO:0010411: xyloglucan metabolic process1.96E-02
161GO:0009641: shade avoidance2.01E-02
162GO:0006949: syncytium formation2.01E-02
163GO:0006259: DNA metabolic process2.01E-02
164GO:0009299: mRNA transcription2.01E-02
165GO:0048229: gametophyte development2.23E-02
166GO:0006816: calcium ion transport2.23E-02
167GO:0006265: DNA topological change2.23E-02
168GO:0009773: photosynthetic electron transport in photosystem I2.23E-02
169GO:0009682: induced systemic resistance2.23E-02
170GO:1903507: negative regulation of nucleic acid-templated transcription2.23E-02
171GO:0006352: DNA-templated transcription, initiation2.23E-02
172GO:0000160: phosphorelay signal transduction system2.28E-02
173GO:0016024: CDP-diacylglycerol biosynthetic process2.46E-02
174GO:0045037: protein import into chloroplast stroma2.46E-02
175GO:0010582: floral meristem determinacy2.46E-02
176GO:0006006: glucose metabolic process2.69E-02
177GO:0009691: cytokinin biosynthetic process2.69E-02
178GO:0030036: actin cytoskeleton organization2.69E-02
179GO:0010075: regulation of meristem growth2.69E-02
180GO:0009725: response to hormone2.69E-02
181GO:2000012: regulation of auxin polar transport2.69E-02
182GO:0010628: positive regulation of gene expression2.69E-02
183GO:0009785: blue light signaling pathway2.69E-02
184GO:0009637: response to blue light2.75E-02
185GO:0009934: regulation of meristem structural organization2.93E-02
186GO:0010143: cutin biosynthetic process2.93E-02
187GO:0010207: photosystem II assembly2.93E-02
188GO:0006541: glutamine metabolic process2.93E-02
189GO:0010030: positive regulation of seed germination3.18E-02
190GO:0070588: calcium ion transmembrane transport3.18E-02
191GO:0010039: response to iron ion3.18E-02
192GO:0006071: glycerol metabolic process3.44E-02
193GO:0006833: water transport3.44E-02
194GO:0010025: wax biosynthetic process3.44E-02
195GO:0010114: response to red light3.55E-02
196GO:0008283: cell proliferation3.55E-02
197GO:0042546: cell wall biogenesis3.69E-02
198GO:0010187: negative regulation of seed germination3.70E-02
199GO:0009944: polarity specification of adaxial/abaxial axis3.70E-02
200GO:0000027: ribosomal large subunit assembly3.70E-02
201GO:0051017: actin filament bundle assembly3.70E-02
202GO:0006468: protein phosphorylation3.95E-02
203GO:0006825: copper ion transport3.97E-02
204GO:0051302: regulation of cell division3.97E-02
205GO:0006418: tRNA aminoacylation for protein translation3.97E-02
206GO:0016998: cell wall macromolecule catabolic process4.25E-02
207GO:0006306: DNA methylation4.25E-02
208GO:0042538: hyperosmotic salinity response4.44E-02
209GO:0006730: one-carbon metabolic process4.53E-02
210GO:0031348: negative regulation of defense response4.53E-02
211GO:0080092: regulation of pollen tube growth4.53E-02
212GO:2000022: regulation of jasmonic acid mediated signaling pathway4.53E-02
213GO:0009736: cytokinin-activated signaling pathway4.76E-02
214GO:0009625: response to insect4.81E-02
215GO:0009686: gibberellin biosynthetic process4.81E-02
216GO:0006508: proteolysis4.90E-02
RankGO TermAdjusted P value
1GO:0004056: argininosuccinate lyase activity0.00E+00
2GO:0004358: glutamate N-acetyltransferase activity0.00E+00
3GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
4GO:0019808: polyamine binding0.00E+00
5GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
6GO:0005089: Rho guanyl-nucleotide exchange factor activity2.04E-04
7GO:0010313: phytochrome binding6.58E-04
8GO:0004830: tryptophan-tRNA ligase activity6.58E-04
9GO:0050139: nicotinate-N-glucosyltransferase activity6.58E-04
10GO:0005290: L-histidine transmembrane transporter activity6.58E-04
11GO:0004008: copper-exporting ATPase activity6.58E-04
12GO:0004071: aspartate-ammonia ligase activity6.58E-04
13GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity6.58E-04
14GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity6.58E-04
15GO:0052381: tRNA dimethylallyltransferase activity6.58E-04
16GO:0003727: single-stranded RNA binding9.73E-04
17GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity1.42E-03
18GO:0017118: lipoyltransferase activity1.42E-03
19GO:0043425: bHLH transcription factor binding1.42E-03
20GO:0016415: octanoyltransferase activity1.42E-03
21GO:0003938: IMP dehydrogenase activity1.42E-03
22GO:0102083: 7,8-dihydromonapterin aldolase activity1.42E-03
23GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.42E-03
24GO:0008805: carbon-monoxide oxygenase activity1.42E-03
25GO:0004150: dihydroneopterin aldolase activity1.42E-03
26GO:0000064: L-ornithine transmembrane transporter activity1.42E-03
27GO:0009672: auxin:proton symporter activity1.65E-03
28GO:0004805: trehalose-phosphatase activity1.93E-03
29GO:0052692: raffinose alpha-galactosidase activity2.34E-03
30GO:0046524: sucrose-phosphate synthase activity2.34E-03
31GO:0070330: aromatase activity2.34E-03
32GO:0052722: fatty acid in-chain hydroxylase activity2.34E-03
33GO:0017150: tRNA dihydrouridine synthase activity2.34E-03
34GO:0045548: phenylalanine ammonia-lyase activity2.34E-03
35GO:0004557: alpha-galactosidase activity2.34E-03
36GO:0010329: auxin efflux transmembrane transporter activity2.92E-03
37GO:0043023: ribosomal large subunit binding3.40E-03
38GO:0001872: (1->3)-beta-D-glucan binding3.40E-03
39GO:0015189: L-lysine transmembrane transporter activity3.40E-03
40GO:0015181: arginine transmembrane transporter activity3.40E-03
41GO:0046556: alpha-L-arabinofuranosidase activity4.58E-03
42GO:0016279: protein-lysine N-methyltransferase activity4.58E-03
43GO:0001053: plastid sigma factor activity4.58E-03
44GO:0004845: uracil phosphoribosyltransferase activity4.58E-03
45GO:0004345: glucose-6-phosphate dehydrogenase activity4.58E-03
46GO:0016987: sigma factor activity4.58E-03
47GO:0005253: anion channel activity4.58E-03
48GO:0004519: endonuclease activity5.15E-03
49GO:0019843: rRNA binding5.43E-03
50GO:0004176: ATP-dependent peptidase activity5.57E-03
51GO:0008725: DNA-3-methyladenine glycosylase activity5.89E-03
52GO:0004372: glycine hydroxymethyltransferase activity5.89E-03
53GO:0016773: phosphotransferase activity, alcohol group as acceptor5.89E-03
54GO:0018685: alkane 1-monooxygenase activity5.89E-03
55GO:0008519: ammonium transmembrane transporter activity7.31E-03
56GO:0005247: voltage-gated chloride channel activity7.31E-03
57GO:2001070: starch binding7.31E-03
58GO:0004605: phosphatidate cytidylyltransferase activity7.31E-03
59GO:1990714: hydroxyproline O-galactosyltransferase activity7.31E-03
60GO:0043621: protein self-association8.05E-03
61GO:0004656: procollagen-proline 4-dioxygenase activity8.84E-03
62GO:0008195: phosphatidate phosphatase activity8.84E-03
63GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity8.84E-03
64GO:0004849: uridine kinase activity8.84E-03
65GO:0004674: protein serine/threonine kinase activity1.03E-02
66GO:0003872: 6-phosphofructokinase activity1.05E-02
67GO:0016762: xyloglucan:xyloglucosyl transferase activity1.14E-02
68GO:0043022: ribosome binding1.22E-02
69GO:0000156: phosphorelay response regulator activity1.30E-02
70GO:0008142: oxysterol binding1.41E-02
71GO:0005375: copper ion transmembrane transporter activity1.41E-02
72GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.41E-02
73GO:0008889: glycerophosphodiester phosphodiesterase activity1.60E-02
74GO:0046983: protein dimerization activity1.61E-02
75GO:0016798: hydrolase activity, acting on glycosyl bonds1.96E-02
76GO:0003723: RNA binding2.21E-02
77GO:0016829: lyase activity2.46E-02
78GO:0000976: transcription regulatory region sequence-specific DNA binding2.46E-02
79GO:0004089: carbonate dehydratase activity2.69E-02
80GO:0031072: heat shock protein binding2.69E-02
81GO:0005262: calcium channel activity2.69E-02
82GO:0009982: pseudouridine synthase activity2.69E-02
83GO:0004022: alcohol dehydrogenase (NAD) activity2.69E-02
84GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism2.69E-02
85GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.93E-02
86GO:0004871: signal transducer activity3.32E-02
87GO:0031418: L-ascorbic acid binding3.70E-02
88GO:0003714: transcription corepressor activity3.70E-02
89GO:0005345: purine nucleobase transmembrane transporter activity3.97E-02
90GO:0008408: 3'-5' exonuclease activity4.25E-02
91GO:0004707: MAP kinase activity4.25E-02
92GO:0033612: receptor serine/threonine kinase binding4.25E-02
93GO:0004672: protein kinase activity4.53E-02
94GO:0016301: kinase activity4.62E-02
95GO:0005515: protein binding4.70E-02
96GO:0030570: pectate lyase activity4.81E-02
97GO:0003690: double-stranded DNA binding4.93E-02
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Gene type



Gene DE type