Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G23690

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0080127: fruit septum development0.00E+00
2GO:0033206: meiotic cytokinesis0.00E+00
3GO:0042794: rRNA transcription from plastid promoter0.00E+00
4GO:0044154: histone H3-K14 acetylation0.00E+00
5GO:0045014: negative regulation of transcription by glucose0.00E+00
6GO:1901698: response to nitrogen compound0.00E+00
7GO:0009606: tropism0.00E+00
8GO:0090322: regulation of superoxide metabolic process0.00E+00
9GO:0000372: Group I intron splicing0.00E+00
10GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement0.00E+00
11GO:0097164: ammonium ion metabolic process0.00E+00
12GO:0043972: histone H3-K23 acetylation0.00E+00
13GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.80E-05
14GO:0009734: auxin-activated signaling pathway3.36E-05
15GO:0048229: gametophyte development3.59E-05
16GO:2000038: regulation of stomatal complex development5.93E-05
17GO:0006351: transcription, DNA-templated7.14E-05
18GO:0042793: transcription from plastid promoter1.36E-04
19GO:2000033: regulation of seed dormancy process1.85E-04
20GO:0010067: procambium histogenesis1.85E-04
21GO:0006955: immune response2.42E-04
22GO:1903866: palisade mesophyll development3.02E-04
23GO:0010480: microsporocyte differentiation3.02E-04
24GO:0090063: positive regulation of microtubule nucleation3.02E-04
25GO:0034971: histone H3-R17 methylation3.02E-04
26GO:0010342: endosperm cellularization3.02E-04
27GO:0034757: negative regulation of iron ion transport3.02E-04
28GO:0048016: inositol phosphate-mediated signaling3.02E-04
29GO:0034970: histone H3-R2 methylation3.02E-04
30GO:0034972: histone H3-R26 methylation3.02E-04
31GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic3.02E-04
32GO:0043971: histone H3-K18 acetylation3.02E-04
33GO:0009938: negative regulation of gibberellic acid mediated signaling pathway3.05E-04
34GO:0007389: pattern specification process3.75E-04
35GO:0000910: cytokinesis5.88E-04
36GO:0048439: flower morphogenesis6.60E-04
37GO:0009662: etioplast organization6.60E-04
38GO:0080009: mRNA methylation6.60E-04
39GO:0006529: asparagine biosynthetic process6.60E-04
40GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine6.60E-04
41GO:2000123: positive regulation of stomatal complex development6.60E-04
42GO:0010254: nectary development6.60E-04
43GO:1901529: positive regulation of anion channel activity6.60E-04
44GO:0033566: gamma-tubulin complex localization6.60E-04
45GO:0009967: positive regulation of signal transduction6.60E-04
46GO:0070981: L-asparagine biosynthetic process6.60E-04
47GO:0010434: bract formation6.60E-04
48GO:0010271: regulation of chlorophyll catabolic process6.60E-04
49GO:0010029: regulation of seed germination6.78E-04
50GO:0010582: floral meristem determinacy8.22E-04
51GO:0006355: regulation of transcription, DNA-templated8.32E-04
52GO:0010588: cotyledon vascular tissue pattern formation9.29E-04
53GO:0006468: protein phosphorylation9.34E-04
54GO:0071705: nitrogen compound transport1.07E-03
55GO:0042780: tRNA 3'-end processing1.07E-03
56GO:0001578: microtubule bundle formation1.07E-03
57GO:0009954: proximal/distal pattern formation1.07E-03
58GO:0010476: gibberellin mediated signaling pathway1.07E-03
59GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic1.07E-03
60GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement1.07E-03
61GO:0080117: secondary growth1.07E-03
62GO:0090391: granum assembly1.07E-03
63GO:0010589: leaf proximal/distal pattern formation1.07E-03
64GO:0040008: regulation of growth1.37E-03
65GO:0010187: negative regulation of seed germination1.44E-03
66GO:2000377: regulation of reactive oxygen species metabolic process1.44E-03
67GO:0009863: salicylic acid mediated signaling pathway1.44E-03
68GO:0009558: embryo sac cellularization1.53E-03
69GO:0010371: regulation of gibberellin biosynthetic process1.53E-03
70GO:1902476: chloride transmembrane transport1.53E-03
71GO:0010239: chloroplast mRNA processing1.53E-03
72GO:0007276: gamete generation1.53E-03
73GO:0043481: anthocyanin accumulation in tissues in response to UV light1.53E-03
74GO:0009800: cinnamic acid biosynthetic process1.53E-03
75GO:0016998: cell wall macromolecule catabolic process1.74E-03
76GO:0009739: response to gibberellin1.75E-03
77GO:0006808: regulation of nitrogen utilization2.06E-03
78GO:0006479: protein methylation2.06E-03
79GO:1900864: mitochondrial RNA modification2.06E-03
80GO:0051322: anaphase2.06E-03
81GO:0071249: cellular response to nitrate2.06E-03
82GO:0035279: mRNA cleavage involved in gene silencing by miRNA2.06E-03
83GO:0000914: phragmoplast assembly2.06E-03
84GO:0071215: cellular response to abscisic acid stimulus2.07E-03
85GO:0009733: response to auxin2.10E-03
86GO:0042538: hyperosmotic salinity response2.18E-03
87GO:0048497: maintenance of floral organ identity2.63E-03
88GO:0032957: inositol trisphosphate metabolic process2.63E-03
89GO:0032876: negative regulation of DNA endoreduplication2.63E-03
90GO:0030308: negative regulation of cell growth2.63E-03
91GO:0010375: stomatal complex patterning2.63E-03
92GO:0009616: virus induced gene silencing2.63E-03
93GO:0010501: RNA secondary structure unwinding2.64E-03
94GO:0010051: xylem and phloem pattern formation2.64E-03
95GO:0009909: regulation of flower development2.71E-03
96GO:0010305: leaf vascular tissue pattern formation2.84E-03
97GO:0009658: chloroplast organization2.87E-03
98GO:0007018: microtubule-based movement3.05E-03
99GO:0046855: inositol phosphate dephosphorylation3.24E-03
100GO:0009643: photosynthetic acclimation3.24E-03
101GO:0016554: cytidine to uridine editing3.24E-03
102GO:0009913: epidermal cell differentiation3.24E-03
103GO:0042176: regulation of protein catabolic process3.24E-03
104GO:0048831: regulation of shoot system development3.24E-03
105GO:0010315: auxin efflux3.24E-03
106GO:0003006: developmental process involved in reproduction3.24E-03
107GO:0006559: L-phenylalanine catabolic process3.24E-03
108GO:0009749: response to glucose3.27E-03
109GO:0009740: gibberellic acid mediated signaling pathway3.46E-03
110GO:0010583: response to cyclopentenone3.74E-03
111GO:0048509: regulation of meristem development3.90E-03
112GO:0009099: valine biosynthetic process3.90E-03
113GO:2000037: regulation of stomatal complex patterning3.90E-03
114GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity3.90E-03
115GO:0010310: regulation of hydrogen peroxide metabolic process3.90E-03
116GO:0009955: adaxial/abaxial pattern specification3.90E-03
117GO:0000911: cytokinesis by cell plate formation3.90E-03
118GO:0009082: branched-chain amino acid biosynthetic process3.90E-03
119GO:0010090: trichome morphogenesis3.99E-03
120GO:0010252: auxin homeostasis4.25E-03
121GO:0035196: production of miRNAs involved in gene silencing by miRNA4.60E-03
122GO:0010103: stomatal complex morphogenesis4.60E-03
123GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway4.60E-03
124GO:0006821: chloride transport4.60E-03
125GO:0048437: floral organ development4.60E-03
126GO:0009416: response to light stimulus4.83E-03
127GO:0030162: regulation of proteolysis5.35E-03
128GO:0042255: ribosome assembly5.35E-03
129GO:0006353: DNA-templated transcription, termination5.35E-03
130GO:0048766: root hair initiation5.35E-03
131GO:0010492: maintenance of shoot apical meristem identity5.35E-03
132GO:0009642: response to light intensity5.35E-03
133GO:0045892: negative regulation of transcription, DNA-templated5.37E-03
134GO:0009097: isoleucine biosynthetic process6.13E-03
135GO:0032544: plastid translation6.13E-03
136GO:0044030: regulation of DNA methylation6.13E-03
137GO:0010093: specification of floral organ identity6.13E-03
138GO:0009880: embryonic pattern specification6.13E-03
139GO:0009827: plant-type cell wall modification6.13E-03
140GO:0001510: RNA methylation6.13E-03
141GO:0010233: phloem transport6.13E-03
142GO:0048574: long-day photoperiodism, flowering6.13E-03
143GO:0000373: Group II intron splicing6.95E-03
144GO:0048589: developmental growth6.95E-03
145GO:0048507: meristem development6.95E-03
146GO:0010218: response to far red light7.29E-03
147GO:0048364: root development7.69E-03
148GO:0042761: very long-chain fatty acid biosynthetic process7.80E-03
149GO:0006349: regulation of gene expression by genetic imprinting7.80E-03
150GO:1900865: chloroplast RNA modification7.80E-03
151GO:0009867: jasmonic acid mediated signaling pathway8.39E-03
152GO:0030422: production of siRNA involved in RNA interference8.70E-03
153GO:0048829: root cap development8.70E-03
154GO:0010048: vernalization response8.70E-03
155GO:0006535: cysteine biosynthetic process from serine8.70E-03
156GO:0009750: response to fructose9.63E-03
157GO:0048765: root hair cell differentiation9.63E-03
158GO:0046856: phosphatidylinositol dephosphorylation9.63E-03
159GO:0009089: lysine biosynthetic process via diaminopimelate9.63E-03
160GO:0009793: embryo development ending in seed dormancy1.00E-02
161GO:0008361: regulation of cell size1.06E-02
162GO:0015706: nitrate transport1.06E-02
163GO:0010152: pollen maturation1.06E-02
164GO:0009926: auxin polar transport1.08E-02
165GO:0010075: regulation of meristem growth1.16E-02
166GO:0010102: lateral root morphogenesis1.16E-02
167GO:0006270: DNA replication initiation1.26E-02
168GO:0010223: secondary shoot formation1.26E-02
169GO:0009887: animal organ morphogenesis1.26E-02
170GO:0009934: regulation of meristem structural organization1.26E-02
171GO:0048467: gynoecium development1.26E-02
172GO:0006541: glutamine metabolic process1.26E-02
173GO:0010020: chloroplast fission1.26E-02
174GO:0080188: RNA-directed DNA methylation1.37E-02
175GO:0010167: response to nitrate1.37E-02
176GO:0006071: glycerol metabolic process1.48E-02
177GO:0009723: response to ethylene1.57E-02
178GO:0019344: cysteine biosynthetic process1.59E-02
179GO:0009944: polarity specification of adaxial/abaxial axis1.59E-02
180GO:0003333: amino acid transmembrane transport1.82E-02
181GO:0010431: seed maturation1.82E-02
182GO:0051301: cell division1.95E-02
183GO:0001944: vasculature development2.07E-02
184GO:0010227: floral organ abscission2.07E-02
185GO:0010082: regulation of root meristem growth2.07E-02
186GO:0010089: xylem development2.20E-02
187GO:0048443: stamen development2.20E-02
188GO:0006284: base-excision repair2.20E-02
189GO:0042127: regulation of cell proliferation2.20E-02
190GO:0070417: cellular response to cold2.33E-02
191GO:0042335: cuticle development2.46E-02
192GO:0000271: polysaccharide biosynthetic process2.46E-02
193GO:0010087: phloem or xylem histogenesis2.46E-02
194GO:0048653: anther development2.46E-02
195GO:0042631: cellular response to water deprivation2.46E-02
196GO:0000226: microtubule cytoskeleton organization2.46E-02
197GO:0009960: endosperm development2.59E-02
198GO:0009958: positive gravitropism2.59E-02
199GO:0045489: pectin biosynthetic process2.59E-02
200GO:0048544: recognition of pollen2.73E-02
201GO:0009646: response to absence of light2.73E-02
202GO:0009845: seed germination2.83E-02
203GO:0048825: cotyledon development2.87E-02
204GO:0080156: mitochondrial mRNA modification3.01E-02
205GO:0032502: developmental process3.16E-02
206GO:0009630: gravitropism3.16E-02
207GO:0019760: glucosinolate metabolic process3.46E-02
208GO:0007267: cell-cell signaling3.61E-02
209GO:0045490: pectin catabolic process3.61E-02
210GO:0071805: potassium ion transmembrane transport3.61E-02
211GO:0009451: RNA modification3.69E-02
212GO:0010228: vegetative to reproductive phase transition of meristem3.77E-02
213GO:0010027: thylakoid membrane organization3.92E-02
214GO:0001666: response to hypoxia3.92E-02
215GO:0008380: RNA splicing4.30E-02
216GO:0016567: protein ubiquitination4.37E-02
217GO:0010411: xyloglucan metabolic process4.40E-02
218GO:0048481: plant ovule development4.73E-02
219GO:0071555: cell wall organization4.81E-02
220GO:0048767: root hair elongation4.90E-02
221GO:0000160: phosphorelay signal transduction system4.90E-02
RankGO TermAdjusted P value
1GO:0004455: ketol-acid reductoisomerase activity0.00E+00
2GO:0042834: peptidoglycan binding0.00E+00
3GO:0005515: protein binding1.66E-04
4GO:0004674: protein serine/threonine kinase activity1.93E-04
5GO:0004016: adenylate cyclase activity3.02E-04
6GO:0008836: diaminopimelate decarboxylase activity3.02E-04
7GO:0046030: inositol trisphosphate phosphatase activity3.02E-04
8GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity3.02E-04
9GO:0016274: protein-arginine N-methyltransferase activity3.02E-04
10GO:0004071: aspartate-ammonia ligase activity3.02E-04
11GO:0019901: protein kinase binding3.60E-04
12GO:0003777: microtubule motor activity4.38E-04
13GO:0000989: transcription factor activity, transcription factor binding4.52E-04
14GO:0009672: auxin:proton symporter activity5.34E-04
15GO:0003700: transcription factor activity, sequence-specific DNA binding6.14E-04
16GO:0009884: cytokinin receptor activity6.60E-04
17GO:0035241: protein-arginine omega-N monomethyltransferase activity6.60E-04
18GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity6.60E-04
19GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity6.60E-04
20GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity6.60E-04
21GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity6.60E-04
22GO:0005078: MAP-kinase scaffold activity6.60E-04
23GO:0010329: auxin efflux transmembrane transporter activity9.29E-04
24GO:0003723: RNA binding9.63E-04
25GO:0005034: osmosensor activity1.07E-03
26GO:0008469: histone-arginine N-methyltransferase activity1.07E-03
27GO:0017150: tRNA dihydrouridine synthase activity1.07E-03
28GO:0045548: phenylalanine ammonia-lyase activity1.07E-03
29GO:0032947: protein complex scaffold1.07E-03
30GO:0042781: 3'-tRNA processing endoribonuclease activity1.07E-03
31GO:0070181: small ribosomal subunit rRNA binding1.07E-03
32GO:0042803: protein homodimerization activity1.32E-03
33GO:0004871: signal transducer activity1.32E-03
34GO:0001872: (1->3)-beta-D-glucan binding1.53E-03
35GO:0008017: microtubule binding1.58E-03
36GO:0005253: anion channel activity2.06E-03
37GO:0010011: auxin binding2.06E-03
38GO:0010385: double-stranded methylated DNA binding2.06E-03
39GO:0030570: pectate lyase activity2.07E-03
40GO:0003727: single-stranded RNA binding2.25E-03
41GO:0008725: DNA-3-methyladenine glycosylase activity2.63E-03
42GO:0005247: voltage-gated chloride channel activity3.24E-03
43GO:0003688: DNA replication origin binding3.24E-03
44GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity3.24E-03
45GO:0004672: protein kinase activity3.77E-03
46GO:0019900: kinase binding3.90E-03
47GO:0004124: cysteine synthase activity3.90E-03
48GO:0043565: sequence-specific DNA binding3.97E-03
49GO:0004004: ATP-dependent RNA helicase activity5.97E-03
50GO:0008173: RNA methyltransferase activity6.13E-03
51GO:0005215: transporter activity6.43E-03
52GO:0008889: glycerophosphodiester phosphodiesterase activity6.95E-03
53GO:0003677: DNA binding8.09E-03
54GO:0005524: ATP binding8.25E-03
55GO:0003697: single-stranded DNA binding8.39E-03
56GO:0004673: protein histidine kinase activity8.70E-03
57GO:0008171: O-methyltransferase activity8.70E-03
58GO:0008559: xenobiotic-transporting ATPase activity9.63E-03
59GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity1.06E-02
60GO:0031072: heat shock protein binding1.16E-02
61GO:0000155: phosphorelay sensor kinase activity1.16E-02
62GO:0009982: pseudouridine synthase activity1.16E-02
63GO:0003725: double-stranded RNA binding1.16E-02
64GO:0004022: alcohol dehydrogenase (NAD) activity1.16E-02
65GO:0043621: protein self-association1.17E-02
66GO:0008289: lipid binding1.19E-02
67GO:0008168: methyltransferase activity1.25E-02
68GO:0003690: double-stranded DNA binding1.52E-02
69GO:0043424: protein histidine kinase binding1.71E-02
70GO:0005345: purine nucleobase transmembrane transporter activity1.71E-02
71GO:0015079: potassium ion transmembrane transporter activity1.71E-02
72GO:0033612: receptor serine/threonine kinase binding1.82E-02
73GO:0004650: polygalacturonase activity1.91E-02
74GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.95E-02
75GO:0003779: actin binding2.03E-02
76GO:0008026: ATP-dependent helicase activity2.21E-02
77GO:0018024: histone-lysine N-methyltransferase activity2.33E-02
78GO:0004402: histone acetyltransferase activity2.46E-02
79GO:0003713: transcription coactivator activity2.59E-02
80GO:0019843: rRNA binding2.62E-02
81GO:0016829: lyase activity2.83E-02
82GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding2.98E-02
83GO:0016762: xyloglucan:xyloglucosyl transferase activity3.01E-02
84GO:0004519: endonuclease activity3.11E-02
85GO:0016759: cellulose synthase activity3.46E-02
86GO:0030247: polysaccharide binding4.40E-02
87GO:0016798: hydrolase activity, acting on glycosyl bonds4.40E-02
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Gene type



Gene DE type