co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G21050

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090627: plant epidermal cell differentiation	0.00E+00
2	GO:0009606: tropism	0.00E+00
3	GO:0090322: regulation of superoxide metabolic process	0.00E+00
4	GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement	0.00E+00
5	GO:0080127: fruit septum development	0.00E+00
6	GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
7	GO:0019988: charged-tRNA amino acid modification	0.00E+00
8	GO:0090615: mitochondrial mRNA processing	0.00E+00
9	GO:0000492: box C/D snoRNP assembly	0.00E+00
10	GO:0042794: rRNA transcription from plastid promoter	0.00E+00
11	GO:0045014: negative regulation of transcription by glucose	0.00E+00
12	GO:0000491: small nucleolar ribonucleoprotein complex assembly	0.00E+00
13	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
14	GO:0035884: arabinan biosynthetic process	0.00E+00
15	GO:0042793: transcription from plastid promoter	7.87E-08
16	GO:0010569: regulation of double-strand break repair via homologous recombination	1.26E-05
17	GO:0006518: peptide metabolic process	4.25E-05
18	GO:0009416: response to light stimulus	4.82E-05
19	GO:0042127: regulation of cell proliferation	6.14E-05
20	GO:2000038: regulation of stomatal complex development	1.56E-04
21	GO:0009913: epidermal cell differentiation	3.35E-04
22	GO:1905039: carboxylic acid transmembrane transport	5.37E-04
23	GO:1905200: gibberellic acid transmembrane transport	5.37E-04
24	GO:1903866: palisade mesophyll development	5.37E-04
25	GO:0010063: positive regulation of trichoblast fate specification	5.37E-04
26	GO:0033206: meiotic cytokinesis	5.37E-04
27	GO:0034757: negative regulation of iron ion transport	5.37E-04
28	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	5.37E-04
29	GO:0080112: seed growth	5.37E-04
30	GO:0009733: response to auxin	6.84E-04
31	GO:0009658: chloroplast organization	7.09E-04
32	GO:0042255: ribosome assembly	7.13E-04
33	GO:0006353: DNA-templated transcription, termination	7.13E-04
34	GO:0010305: leaf vascular tissue pattern formation	8.93E-04
35	GO:0048731: system development	1.16E-03
36	GO:2000071: regulation of defense response by callose deposition	1.16E-03
37	GO:0010271: regulation of chlorophyll catabolic process	1.16E-03
38	GO:0018026: peptidyl-lysine monomethylation	1.16E-03
39	GO:0009662: etioplast organization	1.16E-03
40	GO:1900033: negative regulation of trichome patterning	1.16E-03
41	GO:1904143: positive regulation of carotenoid biosynthetic process	1.16E-03
42	GO:0080009: mRNA methylation	1.16E-03
43	GO:2000123: positive regulation of stomatal complex development	1.16E-03
44	GO:1901529: positive regulation of anion channel activity	1.16E-03
45	GO:1902326: positive regulation of chlorophyll biosynthetic process	1.16E-03
46	GO:1900865: chloroplast RNA modification	1.22E-03
47	GO:0009734: auxin-activated signaling pathway	1.41E-03
48	GO:0090391: granum assembly	1.90E-03
49	GO:0001578: microtubule bundle formation	1.90E-03
50	GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement	1.90E-03
51	GO:0080117: secondary growth	1.90E-03
52	GO:0006351: transcription, DNA-templated	2.19E-03
53	GO:0080188: RNA-directed DNA methylation	2.72E-03
54	GO:1902290: positive regulation of defense response to oomycetes	2.75E-03
55	GO:0010371: regulation of gibberellin biosynthetic process	2.75E-03
56	GO:0010071: root meristem specification	2.75E-03
57	GO:0010239: chloroplast mRNA processing	2.75E-03
58	GO:0007276: gamete generation	2.75E-03
59	GO:0010306: rhamnogalacturonan II biosynthetic process	2.75E-03
60	GO:2000377: regulation of reactive oxygen species metabolic process	3.37E-03
61	GO:0006808: regulation of nitrogen utilization	3.71E-03
62	GO:0006479: protein methylation	3.71E-03
63	GO:0048629: trichome patterning	3.71E-03
64	GO:1900864: mitochondrial RNA modification	3.71E-03
65	GO:0051322: anaphase	3.71E-03
66	GO:0006221: pyrimidine nucleotide biosynthetic process	3.71E-03
67	GO:0030001: metal ion transport	4.19E-03
68	GO:2000022: regulation of jasmonic acid mediated signaling pathway	4.48E-03
69	GO:0048497: maintenance of floral organ identity	4.75E-03
70	GO:0032876: negative regulation of DNA endoreduplication	4.75E-03
71	GO:0030308: negative regulation of cell growth	4.75E-03
72	GO:0010375: stomatal complex patterning	4.75E-03
73	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	4.89E-03
74	GO:0006284: base-excision repair	5.32E-03
75	GO:0009451: RNA modification	5.74E-03
76	GO:0045892: negative regulation of transcription, DNA-templated	5.79E-03
77	GO:0048831: regulation of shoot system development	5.89E-03
78	GO:0003006: developmental process involved in reproduction	5.89E-03
79	GO:0009643: photosynthetic acclimation	5.89E-03
80	GO:0009959: negative gravitropism	5.89E-03
81	GO:0016554: cytidine to uridine editing	5.89E-03
82	GO:0010315: auxin efflux	5.89E-03
83	GO:1902456: regulation of stomatal opening	5.89E-03
84	GO:0010087: phloem or xylem histogenesis	6.24E-03
85	GO:0010118: stomatal movement	6.24E-03
86	GO:0031347: regulation of defense response	6.26E-03
87	GO:0009741: response to brassinosteroid	6.74E-03
88	GO:2000033: regulation of seed dormancy process	7.11E-03
89	GO:1901259: chloroplast rRNA processing	7.11E-03
90	GO:0048509: regulation of meristem development	7.11E-03
91	GO:2000037: regulation of stomatal complex patterning	7.11E-03
92	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	7.11E-03
93	GO:0010310: regulation of hydrogen peroxide metabolic process	7.11E-03
94	GO:0009955: adaxial/abaxial pattern specification	7.11E-03
95	GO:0010067: procambium histogenesis	7.11E-03
96	GO:0048825: cotyledon development	7.78E-03
97	GO:0080156: mitochondrial mRNA modification	8.34E-03
98	GO:0000082: G1/S transition of mitotic cell cycle	8.42E-03
99	GO:0010444: guard mother cell differentiation	8.42E-03
100	GO:0010103: stomatal complex morphogenesis	8.42E-03
101	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	8.42E-03
102	GO:0010374: stomatal complex development	8.42E-03
103	GO:0048437: floral organ development	8.42E-03
104	GO:0032502: developmental process	8.91E-03
105	GO:0010583: response to cyclopentenone	8.91E-03
106	GO:0048367: shoot system development	9.28E-03
107	GO:0046620: regulation of organ growth	9.81E-03
108	GO:0048766: root hair initiation	9.81E-03
109	GO:0010492: maintenance of shoot apical meristem identity	9.81E-03
110	GO:0052543: callose deposition in cell wall	9.81E-03
111	GO:0009787: regulation of abscisic acid-activated signaling pathway	9.81E-03
112	GO:0009938: negative regulation of gibberellic acid mediated signaling pathway	9.81E-03
113	GO:0009642: response to light intensity	9.81E-03
114	GO:0009828: plant-type cell wall loosening	1.01E-02
115	GO:0048574: long-day photoperiodism, flowering	1.13E-02
116	GO:0010052: guard cell differentiation	1.13E-02
117	GO:0032544: plastid translation	1.13E-02
118	GO:0007389: pattern specification process	1.13E-02
119	GO:0009880: embryonic pattern specification	1.13E-02
120	GO:0007186: G-protein coupled receptor signaling pathway	1.13E-02
121	GO:0019430: removal of superoxide radicals	1.13E-02
122	GO:0010233: phloem transport	1.13E-02
123	GO:0009657: plastid organization	1.13E-02
124	GO:0006355: regulation of transcription, DNA-templated	1.17E-02
125	GO:0010027: thylakoid membrane organization	1.21E-02
126	GO:0051726: regulation of cell cycle	1.22E-02
127	GO:0048507: meristem development	1.28E-02
128	GO:0010029: regulation of seed germination	1.28E-02
129	GO:0000373: Group II intron splicing	1.28E-02
130	GO:0048589: developmental growth	1.28E-02
131	GO:0000902: cell morphogenesis	1.28E-02
132	GO:0009245: lipid A biosynthetic process	1.28E-02
133	GO:0048366: leaf development	1.38E-02
134	GO:1900426: positive regulation of defense response to bacterium	1.44E-02
135	GO:0042761: very long-chain fatty acid biosynthetic process	1.44E-02
136	GO:0006349: regulation of gene expression by genetic imprinting	1.44E-02
137	GO:0006468: protein phosphorylation	1.57E-02
138	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.57E-02
139	GO:0048481: plant ovule development	1.59E-02
140	GO:0006535: cysteine biosynthetic process from serine	1.61E-02
141	GO:0048829: root cap development	1.61E-02
142	GO:0045036: protein targeting to chloroplast	1.61E-02
143	GO:0006949: syncytium formation	1.61E-02
144	GO:0010048: vernalization response	1.61E-02
145	GO:0015770: sucrose transport	1.79E-02
146	GO:1903507: negative regulation of nucleic acid-templated transcription	1.79E-02
147	GO:0009750: response to fructose	1.79E-02
148	GO:0046856: phosphatidylinositol dephosphorylation	1.79E-02
149	GO:0009682: induced systemic resistance	1.79E-02
150	GO:0008285: negative regulation of cell proliferation	1.79E-02
151	GO:0010152: pollen maturation	1.97E-02
152	GO:0045037: protein import into chloroplast stroma	1.97E-02
153	GO:0010582: floral meristem determinacy	1.97E-02
154	GO:0008361: regulation of cell size	1.97E-02
155	GO:0012501: programmed cell death	1.97E-02
156	GO:0009867: jasmonic acid mediated signaling pathway	2.01E-02
157	GO:0040008: regulation of growth	2.13E-02
158	GO:0009691: cytokinin biosynthetic process	2.15E-02
159	GO:0010588: cotyledon vascular tissue pattern formation	2.15E-02
160	GO:0010102: lateral root morphogenesis	2.15E-02
161	GO:0007165: signal transduction	2.18E-02
162	GO:0016567: protein ubiquitination	2.33E-02
163	GO:0006270: DNA replication initiation	2.35E-02
164	GO:0010223: secondary shoot formation	2.35E-02
165	GO:0009887: animal organ morphogenesis	2.35E-02
166	GO:0048467: gynoecium development	2.35E-02
167	GO:0010020: chloroplast fission	2.35E-02
168	GO:0051301: cell division	2.53E-02
169	GO:0009901: anther dehiscence	2.55E-02
170	GO:0016042: lipid catabolic process	2.56E-02
171	GO:0009744: response to sucrose	2.60E-02
172	GO:0009739: response to gibberellin	2.61E-02
173	GO:0006636: unsaturated fatty acid biosynthetic process	2.75E-02
174	GO:0008380: RNA splicing	2.83E-02
175	GO:0048364: root development	2.84E-02
176	GO:0080147: root hair cell development	2.96E-02
177	GO:0010187: negative regulation of seed germination	2.96E-02
178	GO:0019344: cysteine biosynthetic process	2.96E-02
179	GO:0009863: salicylic acid mediated signaling pathway	2.96E-02
180	GO:0010073: meristem maintenance	3.18E-02
181	GO:0006825: copper ion transport	3.18E-02
182	GO:0006874: cellular calcium ion homeostasis	3.18E-02
183	GO:0009664: plant-type cell wall organization	3.27E-02
184	GO:0003333: amino acid transmembrane transport	3.40E-02
185	GO:0010431: seed maturation	3.40E-02
186	GO:0006364: rRNA processing	3.50E-02
187	GO:0010082: regulation of root meristem growth	3.86E-02
188	GO:0001944: vasculature development	3.86E-02
189	GO:0071215: cellular response to abscisic acid stimulus	3.86E-02
190	GO:0010089: xylem development	4.09E-02
191	GO:0048443: stamen development	4.09E-02
192	GO:0048316: seed development	4.27E-02
193	GO:0070417: cellular response to cold	4.33E-02
194	GO:0007049: cell cycle	4.46E-02
195	GO:0080022: primary root development	4.58E-02
196	GO:0008033: tRNA processing	4.58E-02
197	GO:0010051: xylem and phloem pattern formation	4.58E-02
198	GO:0042631: cellular response to water deprivation	4.58E-02
199	GO:0000226: microtubule cytoskeleton organization	4.58E-02
200	GO:0009740: gibberellic acid mediated signaling pathway	4.68E-02
201	GO:0048868: pollen tube development	4.83E-02
202	GO:0009960: endosperm development	4.83E-02
203	GO:0009958: positive gravitropism	4.83E-02
204	GO:0071472: cellular response to salt stress	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0043399: tRNA A64-2'-O-ribosylphosphate transferase activity	0.00E+00
2	GO:0016763: transferase activity, transferring pentosyl groups	0.00E+00
3	GO:0071633: dihydroceramidase activity	0.00E+00
4	GO:0004930: G-protein coupled receptor activity	1.56E-04
5	GO:0008725: DNA-3-methyladenine glycosylase activity	2.38E-04
6	GO:0016274: protein-arginine N-methyltransferase activity	5.37E-04
7	GO:0052381: tRNA dimethylallyltransferase activity	5.37E-04
8	GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor	5.37E-04
9	GO:0004016: adenylate cyclase activity	5.37E-04
10	GO:1905201: gibberellin transmembrane transporter activity	5.37E-04
11	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	5.37E-04
12	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	5.37E-04
13	GO:0003727: single-stranded RNA binding	6.63E-04
14	GO:0004519: endonuclease activity	8.03E-04
15	GO:0009884: cytokinin receptor activity	1.16E-03
16	GO:0042389: omega-3 fatty acid desaturase activity	1.16E-03
17	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.16E-03
18	GO:0008805: carbon-monoxide oxygenase activity	1.16E-03
19	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.16E-03
20	GO:0003723: RNA binding	1.89E-03
21	GO:0016805: dipeptidase activity	1.90E-03
22	GO:0005034: osmosensor activity	1.90E-03
23	GO:0017150: tRNA dihydrouridine synthase activity	1.90E-03
24	GO:0003725: double-stranded RNA binding	2.15E-03
25	GO:0001872: (1->3)-beta-D-glucan binding	2.75E-03
26	GO:0009041: uridylate kinase activity	2.75E-03
27	GO:0003700: transcription factor activity, sequence-specific DNA binding	3.26E-03
28	GO:0019843: rRNA binding	3.38E-03
29	GO:0016279: protein-lysine N-methyltransferase activity	3.71E-03
30	GO:0010011: auxin binding	3.71E-03
31	GO:0010328: auxin influx transmembrane transporter activity	3.71E-03
32	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	4.13E-03
33	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	4.75E-03
34	GO:0004888: transmembrane signaling receptor activity	4.75E-03
35	GO:0030570: pectate lyase activity	4.89E-03
36	GO:0004784: superoxide dismutase activity	5.89E-03
37	GO:0031177: phosphopantetheine binding	5.89E-03
38	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	5.89E-03
39	GO:0009378: four-way junction helicase activity	5.89E-03
40	GO:0003688: DNA replication origin binding	5.89E-03
41	GO:0043140: ATP-dependent 3'-5' DNA helicase activity	5.89E-03
42	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	6.74E-03
43	GO:0001085: RNA polymerase II transcription factor binding	6.74E-03
44	GO:0000035: acyl binding	7.11E-03
45	GO:0019900: kinase binding	7.11E-03
46	GO:0004124: cysteine synthase activity	7.11E-03
47	GO:0016832: aldehyde-lyase activity	7.11E-03
48	GO:0003677: DNA binding	7.26E-03
49	GO:0019901: protein kinase binding	7.78E-03
50	GO:0030515: snoRNA binding	8.42E-03
51	GO:0043565: sequence-specific DNA binding	9.32E-03
52	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	9.81E-03
53	GO:0016788: hydrolase activity, acting on ester bonds	1.11E-02
54	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	1.13E-02
55	GO:0008173: RNA methyltransferase activity	1.13E-02
56	GO:0000989: transcription factor activity, transcription factor binding	1.28E-02
57	GO:0009672: auxin:proton symporter activity	1.44E-02
58	GO:0004673: protein histidine kinase activity	1.61E-02
59	GO:0052689: carboxylic ester hydrolase activity	1.74E-02
60	GO:0004222: metalloendopeptidase activity	1.75E-02
61	GO:0008515: sucrose transmembrane transporter activity	1.79E-02
62	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	1.84E-02
63	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	1.97E-02
64	GO:0005515: protein binding	2.04E-02
65	GO:0004871: signal transducer activity	2.10E-02
66	GO:0010329: auxin efflux transmembrane transporter activity	2.15E-02
67	GO:0004022: alcohol dehydrogenase (NAD) activity	2.15E-02
68	GO:0000155: phosphorelay sensor kinase activity	2.15E-02
69	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	2.35E-02
70	GO:0051119: sugar transmembrane transporter activity	2.55E-02
71	GO:0005217: intracellular ligand-gated ion channel activity	2.55E-02
72	GO:0004970: ionotropic glutamate receptor activity	2.55E-02
73	GO:0004190: aspartic-type endopeptidase activity	2.55E-02
74	GO:0043621: protein self-association	2.81E-02
75	GO:0003714: transcription corepressor activity	2.96E-02
76	GO:0043424: protein histidine kinase binding	3.18E-02
77	GO:0004674: protein serine/threonine kinase activity	3.58E-02
78	GO:0003690: double-stranded DNA binding	3.63E-02
79	GO:0008168: methyltransferase activity	3.72E-02
80	GO:0003777: microtubule motor activity	3.88E-02
81	GO:0008289: lipid binding	4.32E-02
82	GO:0018024: histone-lysine N-methyltransferase activity	4.33E-02
83	GO:0005102: receptor binding	4.33E-02
84	GO:0003779: actin binding	4.82E-02
85	GO:0003713: transcription coactivator activity	4.83E-02