co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G19940

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0034337: RNA folding	0.00E+00
2	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
3	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
4	GO:0005996: monosaccharide metabolic process	0.00E+00
5	GO:0016553: base conversion or substitution editing	0.00E+00
6	GO:0015995: chlorophyll biosynthetic process	1.17E-07
7	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.89E-05
8	GO:0010600: regulation of auxin biosynthetic process	5.21E-05
9	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.64E-04
10	GO:0015979: photosynthesis	1.87E-04
11	GO:0009735: response to cytokinin	2.07E-04
12	GO:0010928: regulation of auxin mediated signaling pathway	2.73E-04
13	GO:0009704: de-etiolation	2.73E-04
14	GO:1904964: positive regulation of phytol biosynthetic process	2.80E-04
15	GO:0065002: intracellular protein transmembrane transport	2.80E-04
16	GO:0043087: regulation of GTPase activity	2.80E-04
17	GO:0046167: glycerol-3-phosphate biosynthetic process	2.80E-04
18	GO:0043007: maintenance of rDNA	2.80E-04
19	GO:0015969: guanosine tetraphosphate metabolic process	2.80E-04
20	GO:0043953: protein transport by the Tat complex	2.80E-04
21	GO:0010426: DNA methylation on cytosine within a CHH sequence	2.80E-04
22	GO:0071277: cellular response to calcium ion	2.80E-04
23	GO:0043489: RNA stabilization	2.80E-04
24	GO:1904966: positive regulation of vitamin E biosynthetic process	2.80E-04
25	GO:0000481: maturation of 5S rRNA	2.80E-04
26	GO:0032544: plastid translation	3.35E-04
27	GO:0006783: heme biosynthetic process	4.05E-04
28	GO:0009658: chloroplast organization	5.00E-04
29	GO:0006729: tetrahydrobiopterin biosynthetic process	6.14E-04
30	GO:1902326: positive regulation of chlorophyll biosynthetic process	6.14E-04
31	GO:0006650: glycerophospholipid metabolic process	6.14E-04
32	GO:0018119: peptidyl-cysteine S-nitrosylation	6.45E-04
33	GO:0009773: photosynthetic electron transport in photosystem I	6.45E-04
34	GO:0006094: gluconeogenesis	8.37E-04
35	GO:0044375: regulation of peroxisome size	9.96E-04
36	GO:0046168: glycerol-3-phosphate catabolic process	9.96E-04
37	GO:0006633: fatty acid biosynthetic process	1.08E-03
38	GO:0009152: purine ribonucleotide biosynthetic process	1.42E-03
39	GO:0046653: tetrahydrofolate metabolic process	1.42E-03
40	GO:0006072: glycerol-3-phosphate metabolic process	1.42E-03
41	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.42E-03
42	GO:0033014: tetrapyrrole biosynthetic process	1.42E-03
43	GO:0010731: protein glutathionylation	1.42E-03
44	GO:1901332: negative regulation of lateral root development	1.42E-03
45	GO:0010021: amylopectin biosynthetic process	1.91E-03
46	GO:0045727: positive regulation of translation	1.91E-03
47	GO:0009107: lipoate biosynthetic process	2.43E-03
48	GO:0006465: signal peptide processing	2.43E-03
49	GO:0000304: response to singlet oxygen	2.43E-03
50	GO:0043097: pyrimidine nucleoside salvage	2.43E-03
51	GO:0006096: glycolytic process	2.56E-03
52	GO:0042549: photosystem II stabilization	3.00E-03
53	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	3.00E-03
54	GO:0006206: pyrimidine nucleobase metabolic process	3.00E-03
55	GO:0055114: oxidation-reduction process	3.51E-03
56	GO:1901259: chloroplast rRNA processing	3.62E-03
57	GO:0000054: ribosomal subunit export from nucleus	3.62E-03
58	GO:0050790: regulation of catalytic activity	4.26E-03
59	GO:0010161: red light signaling pathway	4.26E-03
60	GO:0009772: photosynthetic electron transport in photosystem II	4.26E-03
61	GO:1900057: positive regulation of leaf senescence	4.26E-03
62	GO:0006400: tRNA modification	4.26E-03
63	GO:0010027: thylakoid membrane organization	4.53E-03
64	GO:0016559: peroxisome fission	4.95E-03
65	GO:0048564: photosystem I assembly	4.95E-03
66	GO:0005978: glycogen biosynthetic process	4.95E-03
67	GO:0042255: ribosome assembly	4.95E-03
68	GO:0006353: DNA-templated transcription, termination	4.95E-03
69	GO:0032508: DNA duplex unwinding	4.95E-03
70	GO:0009657: plastid organization	5.67E-03
71	GO:0009817: defense response to fungus, incompatible interaction	5.91E-03
72	GO:0006098: pentose-phosphate shunt	6.43E-03
73	GO:0090305: nucleic acid phosphodiester bond hydrolysis	6.43E-03
74	GO:0090333: regulation of stomatal closure	6.43E-03
75	GO:0006754: ATP biosynthetic process	6.43E-03
76	GO:0005982: starch metabolic process	7.22E-03
77	GO:0006779: porphyrin-containing compound biosynthetic process	7.22E-03
78	GO:0043069: negative regulation of programmed cell death	8.04E-03
79	GO:0006782: protoporphyrinogen IX biosynthetic process	8.04E-03
80	GO:0006535: cysteine biosynthetic process from serine	8.04E-03
81	GO:0006415: translational termination	8.90E-03
82	GO:0000272: polysaccharide catabolic process	8.90E-03
83	GO:0006631: fatty acid metabolic process	8.91E-03
84	GO:0018107: peptidyl-threonine phosphorylation	1.07E-02
85	GO:0009725: response to hormone	1.07E-02
86	GO:0009636: response to toxic substance	1.09E-02
87	GO:0042254: ribosome biogenesis	1.16E-02
88	GO:0009266: response to temperature stimulus	1.17E-02
89	GO:0034605: cellular response to heat	1.17E-02
90	GO:0019253: reductive pentose-phosphate cycle	1.17E-02
91	GO:0010207: photosystem II assembly	1.17E-02
92	GO:0007031: peroxisome organization	1.26E-02
93	GO:0006364: rRNA processing	1.31E-02
94	GO:0009585: red, far-red light phototransduction	1.31E-02
95	GO:0019762: glucosinolate catabolic process	1.37E-02
96	GO:0006636: unsaturated fatty acid biosynthetic process	1.37E-02
97	GO:0019344: cysteine biosynthetic process	1.47E-02
98	GO:0006289: nucleotide-excision repair	1.47E-02
99	GO:0007017: microtubule-based process	1.58E-02
100	GO:0048511: rhythmic process	1.68E-02
101	GO:0010431: seed maturation	1.68E-02
102	GO:0006306: DNA methylation	1.68E-02
103	GO:0031408: oxylipin biosynthetic process	1.68E-02
104	GO:0080092: regulation of pollen tube growth	1.80E-02
105	GO:0010017: red or far-red light signaling pathway	1.80E-02
106	GO:0035428: hexose transmembrane transport	1.80E-02
107	GO:0016226: iron-sulfur cluster assembly	1.80E-02
108	GO:0006412: translation	1.84E-02
109	GO:0009693: ethylene biosynthetic process	1.91E-02
110	GO:0006396: RNA processing	1.92E-02
111	GO:0009561: megagametogenesis	2.03E-02
112	GO:0006817: phosphate ion transport	2.03E-02
113	GO:0009306: protein secretion	2.03E-02
114	GO:0042631: cellular response to water deprivation	2.27E-02
115	GO:0032259: methylation	2.31E-02
116	GO:0046323: glucose import	2.39E-02
117	GO:0009058: biosynthetic process	2.46E-02
118	GO:0015986: ATP synthesis coupled proton transport	2.52E-02
119	GO:0019252: starch biosynthetic process	2.65E-02
120	GO:0008654: phospholipid biosynthetic process	2.65E-02
121	GO:0005975: carbohydrate metabolic process	2.75E-02
122	GO:0032502: developmental process	2.91E-02
123	GO:0010583: response to cyclopentenone	2.91E-02
124	GO:0009567: double fertilization forming a zygote and endosperm	3.19E-02
125	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.76E-02
126	GO:0042128: nitrate assimilation	3.91E-02
127	GO:0010411: xyloglucan metabolic process	4.06E-02
128	GO:0018298: protein-chromophore linkage	4.37E-02
129	GO:0009813: flavonoid biosynthetic process	4.52E-02
130	GO:0010311: lateral root formation	4.52E-02
131	GO:0009407: toxin catabolic process	4.68E-02
132	GO:0007568: aging	4.84E-02
133	GO:0009631: cold acclimation	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity	0.00E+00
2	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
3	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
4	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
5	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
6	GO:0009673: low-affinity phosphate transmembrane transporter activity	0.00E+00
7	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
8	GO:0008974: phosphoribulokinase activity	0.00E+00
9	GO:0019843: rRNA binding	1.62E-09
10	GO:0018708: thiol S-methyltransferase activity	3.59E-06
11	GO:0016851: magnesium chelatase activity	2.89E-05
12	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	5.21E-05
13	GO:0004332: fructose-bisphosphate aldolase activity	1.20E-04
14	GO:0016491: oxidoreductase activity	2.06E-04
15	GO:0080132: fatty acid alpha-hydroxylase activity	2.80E-04
16	GO:0004325: ferrochelatase activity	2.80E-04
17	GO:0004853: uroporphyrinogen decarboxylase activity	2.80E-04
18	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	2.80E-04
19	GO:0005080: protein kinase C binding	2.80E-04
20	GO:0050017: L-3-cyanoalanine synthase activity	6.14E-04
21	GO:0042389: omega-3 fatty acid desaturase activity	6.14E-04
22	GO:0010297: heteropolysaccharide binding	6.14E-04
23	GO:0009977: proton motive force dependent protein transmembrane transporter activity	6.14E-04
24	GO:0034432: bis(5'-adenosyl)-pentaphosphatase activity	6.14E-04
25	GO:0043024: ribosomal small subunit binding	6.14E-04
26	GO:0003844: 1,4-alpha-glucan branching enzyme activity	6.14E-04
27	GO:0004081: bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity	6.14E-04
28	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	6.14E-04
29	GO:0019172: glyoxalase III activity	6.14E-04
30	GO:0008728: GTP diphosphokinase activity	6.14E-04
31	GO:0031072: heat shock protein binding	8.37E-04
32	GO:0004565: beta-galactosidase activity	8.37E-04
33	GO:0008266: poly(U) RNA binding	9.39E-04
34	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	9.96E-04
35	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	9.96E-04
36	GO:0008864: formyltetrahydrofolate deformylase activity	9.96E-04
37	GO:0010277: chlorophyllide a oxygenase [overall] activity	9.96E-04
38	GO:0043169: cation binding	9.96E-04
39	GO:0016992: lipoate synthase activity	9.96E-04
40	GO:0005504: fatty acid binding	9.96E-04
41	GO:0004751: ribose-5-phosphate isomerase activity	9.96E-04
42	GO:0005528: FK506 binding	1.29E-03
43	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.72E-03
44	GO:0043495: protein anchor	1.91E-03
45	GO:0070628: proteasome binding	1.91E-03
46	GO:0045430: chalcone isomerase activity	1.91E-03
47	GO:0003735: structural constituent of ribosome	1.94E-03
48	GO:0003727: single-stranded RNA binding	2.02E-03
49	GO:0031593: polyubiquitin binding	3.00E-03
50	GO:0004462: lactoylglutathione lyase activity	3.00E-03
51	GO:0048038: quinone binding	3.14E-03
52	GO:0004124: cysteine synthase activity	3.62E-03
53	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	3.62E-03
54	GO:0004849: uridine kinase activity	3.62E-03
55	GO:0016831: carboxy-lyase activity	4.26E-03
56	GO:0019899: enzyme binding	4.26E-03
57	GO:0004033: aldo-keto reductase (NADP) activity	4.95E-03
58	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	5.67E-03
59	GO:0071949: FAD binding	6.43E-03
60	GO:0030955: potassium ion binding	7.22E-03
61	GO:0004743: pyruvate kinase activity	7.22E-03
62	GO:0003746: translation elongation factor activity	7.49E-03
63	GO:0030234: enzyme regulator activity	8.04E-03
64	GO:0042802: identical protein binding	8.81E-03
65	GO:0005089: Rho guanyl-nucleotide exchange factor activity	8.90E-03
66	GO:0004364: glutathione transferase activity	9.29E-03
67	GO:0051537: 2 iron, 2 sulfur cluster binding	1.05E-02
68	GO:0035091: phosphatidylinositol binding	1.05E-02
69	GO:0005315: inorganic phosphate transmembrane transporter activity	1.07E-02
70	GO:0019888: protein phosphatase regulator activity	1.07E-02
71	GO:0008168: methyltransferase activity	1.08E-02
72	GO:0016887: ATPase activity	1.18E-02
73	GO:0003690: double-stranded DNA binding	1.35E-02
74	GO:0051536: iron-sulfur cluster binding	1.47E-02
75	GO:0043130: ubiquitin binding	1.47E-02
76	GO:0003824: catalytic activity	1.59E-02
77	GO:0051082: unfolded protein binding	1.86E-02
78	GO:0022891: substrate-specific transmembrane transporter activity	1.91E-02
79	GO:0003723: RNA binding	2.06E-02
80	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.39E-02
81	GO:0005355: glucose transmembrane transporter activity	2.52E-02
82	GO:0050662: coenzyme binding	2.52E-02
83	GO:0004872: receptor activity	2.65E-02
84	GO:0003729: mRNA binding	2.66E-02
85	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.78E-02
86	GO:0004518: nuclease activity	2.91E-02
87	GO:0003684: damaged DNA binding	3.19E-02
88	GO:0005200: structural constituent of cytoskeleton	3.33E-02
89	GO:0016168: chlorophyll binding	3.76E-02
90	GO:0005506: iron ion binding	4.01E-02
91	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.06E-02
92	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	4.21E-02
93	GO:0005096: GTPase activator activity	4.52E-02
94	GO:0004222: metalloendopeptidase activity	4.68E-02
95	GO:0004601: peroxidase activity	4.96E-02