Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G19620

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0015843: methylammonium transport0.00E+00
2GO:0031222: arabinan catabolic process0.00E+00
3GO:0070979: protein K11-linked ubiquitination0.00E+00
4GO:0071260: cellular response to mechanical stimulus0.00E+00
5GO:1905421: regulation of plant organ morphogenesis0.00E+00
6GO:0061157: mRNA destabilization0.00E+00
7GO:0030155: regulation of cell adhesion0.00E+00
8GO:0009157: deoxyribonucleoside monophosphate biosynthetic process0.00E+00
9GO:0031116: positive regulation of microtubule polymerization0.00E+00
10GO:0010068: protoderm histogenesis0.00E+00
11GO:0007638: mechanosensory behavior0.00E+00
12GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
13GO:0007172: signal complex assembly0.00E+00
14GO:0071311: cellular response to acetate0.00E+00
15GO:0009733: response to auxin1.19E-07
16GO:0009734: auxin-activated signaling pathway1.24E-07
17GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.68E-07
18GO:0046620: regulation of organ growth3.75E-07
19GO:0040008: regulation of growth2.13E-06
20GO:0000373: Group II intron splicing4.57E-05
21GO:0006468: protein phosphorylation1.41E-04
22GO:0006177: GMP biosynthetic process4.67E-04
23GO:0071028: nuclear mRNA surveillance4.67E-04
24GO:0046520: sphingoid biosynthetic process4.67E-04
25GO:0010480: microsporocyte differentiation4.67E-04
26GO:0043609: regulation of carbon utilization4.67E-04
27GO:0006436: tryptophanyl-tRNA aminoacylation4.67E-04
28GO:0000066: mitochondrial ornithine transport4.67E-04
29GO:0009926: auxin polar transport6.44E-04
30GO:0006002: fructose 6-phosphate metabolic process7.08E-04
31GO:0009638: phototropism9.98E-04
32GO:0071051: polyadenylation-dependent snoRNA 3'-end processing1.01E-03
33GO:0034475: U4 snRNA 3'-end processing1.01E-03
34GO:0071497: cellular response to freezing1.01E-03
35GO:0006423: cysteinyl-tRNA aminoacylation1.01E-03
36GO:0031125: rRNA 3'-end processing1.01E-03
37GO:0006816: calcium ion transport1.34E-03
38GO:0016075: rRNA catabolic process1.64E-03
39GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'1.64E-03
40GO:0048281: inflorescence morphogenesis1.64E-03
41GO:0051127: positive regulation of actin nucleation1.64E-03
42GO:0006000: fructose metabolic process1.64E-03
43GO:0071230: cellular response to amino acid stimulus1.64E-03
44GO:0031145: anaphase-promoting complex-dependent catabolic process1.64E-03
45GO:0009150: purine ribonucleotide metabolic process1.64E-03
46GO:0001578: microtubule bundle formation1.64E-03
47GO:0009767: photosynthetic electron transport chain1.74E-03
48GO:2000012: regulation of auxin polar transport1.74E-03
49GO:0007275: multicellular organism development1.78E-03
50GO:0009658: chloroplast organization1.93E-03
51GO:0009934: regulation of meristem structural organization1.97E-03
52GO:0010020: chloroplast fission1.97E-03
53GO:0007231: osmosensory signaling pathway2.38E-03
54GO:0030071: regulation of mitotic metaphase/anaphase transition2.38E-03
55GO:0051639: actin filament network formation2.38E-03
56GO:0009226: nucleotide-sugar biosynthetic process2.38E-03
57GO:0044211: CTP salvage2.38E-03
58GO:0048645: animal organ formation2.38E-03
59GO:0019048: modulation by virus of host morphology or physiology2.38E-03
60GO:0015696: ammonium transport2.38E-03
61GO:0046739: transport of virus in multicellular host2.38E-03
62GO:0032981: mitochondrial respiratory chain complex I assembly2.38E-03
63GO:2000904: regulation of starch metabolic process2.38E-03
64GO:0031048: chromatin silencing by small RNA2.38E-03
65GO:0010148: transpiration2.38E-03
66GO:0043572: plastid fission2.38E-03
67GO:1902476: chloride transmembrane transport2.38E-03
68GO:0071555: cell wall organization2.39E-03
69GO:0009944: polarity specification of adaxial/abaxial axis2.73E-03
70GO:0005992: trehalose biosynthetic process2.73E-03
71GO:0006418: tRNA aminoacylation for protein translation3.01E-03
72GO:0006839: mitochondrial transport3.19E-03
73GO:0051764: actin crosslink formation3.20E-03
74GO:0051322: anaphase3.20E-03
75GO:0033500: carbohydrate homeostasis3.20E-03
76GO:0072488: ammonium transmembrane transport3.20E-03
77GO:0022622: root system development3.20E-03
78GO:0051567: histone H3-K9 methylation3.20E-03
79GO:0007020: microtubule nucleation3.20E-03
80GO:0044205: 'de novo' UMP biosynthetic process3.20E-03
81GO:0044206: UMP salvage3.20E-03
82GO:0009165: nucleotide biosynthetic process3.20E-03
83GO:1901141: regulation of lignin biosynthetic process3.20E-03
84GO:0016310: phosphorylation3.28E-03
85GO:0009686: gibberellin biosynthetic process3.96E-03
86GO:1902183: regulation of shoot apical meristem development4.10E-03
87GO:0016123: xanthophyll biosynthetic process4.10E-03
88GO:0010158: abaxial cell fate specification4.10E-03
89GO:0048578: positive regulation of long-day photoperiodism, flowering4.10E-03
90GO:0032876: negative regulation of DNA endoreduplication4.10E-03
91GO:0046785: microtubule polymerization4.10E-03
92GO:0006544: glycine metabolic process4.10E-03
93GO:0009959: negative gravitropism5.08E-03
94GO:0006655: phosphatidylglycerol biosynthetic process5.08E-03
95GO:0006139: nucleobase-containing compound metabolic process5.08E-03
96GO:0006206: pyrimidine nucleobase metabolic process5.08E-03
97GO:0016458: gene silencing5.08E-03
98GO:0018258: protein O-linked glycosylation via hydroxyproline5.08E-03
99GO:0006563: L-serine metabolic process5.08E-03
100GO:0010405: arabinogalactan protein metabolic process5.08E-03
101GO:0006508: proteolysis6.03E-03
102GO:0080086: stamen filament development6.13E-03
103GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity6.13E-03
104GO:0042372: phylloquinone biosynthetic process6.13E-03
105GO:0030488: tRNA methylation6.13E-03
106GO:0010161: red light signaling pathway7.25E-03
107GO:0009610: response to symbiotic fungus7.25E-03
108GO:0048528: post-embryonic root development7.25E-03
109GO:0006821: chloride transport7.25E-03
110GO:0070370: cellular heat acclimation7.25E-03
111GO:0010050: vegetative phase change7.25E-03
112GO:0048437: floral organ development7.25E-03
113GO:0030307: positive regulation of cell growth7.25E-03
114GO:0010103: stomatal complex morphogenesis7.25E-03
115GO:0032880: regulation of protein localization7.25E-03
116GO:0009740: gibberellic acid mediated signaling pathway7.96E-03
117GO:0010252: auxin homeostasis8.17E-03
118GO:0030154: cell differentiation8.24E-03
119GO:0001522: pseudouridine synthesis8.44E-03
120GO:0009850: auxin metabolic process8.44E-03
121GO:0009704: de-etiolation8.44E-03
122GO:0032875: regulation of DNA endoreduplication8.44E-03
123GO:0042255: ribosome assembly8.44E-03
124GO:0070413: trehalose metabolism in response to stress8.44E-03
125GO:0051607: defense response to virus9.21E-03
126GO:0009742: brassinosteroid mediated signaling pathway9.26E-03
127GO:0010099: regulation of photomorphogenesis9.69E-03
128GO:0001558: regulation of cell growth9.69E-03
129GO:0009827: plant-type cell wall modification9.69E-03
130GO:0010497: plasmodesmata-mediated intercellular transport9.69E-03
131GO:0009657: plastid organization9.69E-03
132GO:0010100: negative regulation of photomorphogenesis9.69E-03
133GO:0006526: arginine biosynthetic process9.69E-03
134GO:0007389: pattern specification process9.69E-03
135GO:0009051: pentose-phosphate shunt, oxidative branch1.10E-02
136GO:2000024: regulation of leaf development1.10E-02
137GO:0006783: heme biosynthetic process1.10E-02
138GO:0000902: cell morphogenesis1.10E-02
139GO:0010411: xyloglucan metabolic process1.15E-02
140GO:0042761: very long-chain fatty acid biosynthetic process1.24E-02
141GO:0035999: tetrahydrofolate interconversion1.24E-02
142GO:0031425: chloroplast RNA processing1.24E-02
143GO:0000160: phosphorelay signal transduction system1.34E-02
144GO:0009299: mRNA transcription1.38E-02
145GO:0006535: cysteine biosynthetic process from serine1.38E-02
146GO:0030422: production of siRNA involved in RNA interference1.38E-02
147GO:0010015: root morphogenesis1.53E-02
148GO:0009773: photosynthetic electron transport in photosystem I1.53E-02
149GO:1903507: negative regulation of nucleic acid-templated transcription1.53E-02
150GO:0048229: gametophyte development1.53E-02
151GO:0006790: sulfur compound metabolic process1.69E-02
152GO:0016024: CDP-diacylglycerol biosynthetic process1.69E-02
153GO:0010582: floral meristem determinacy1.69E-02
154GO:0009725: response to hormone1.85E-02
155GO:0010628: positive regulation of gene expression1.85E-02
156GO:0009785: blue light signaling pathway1.85E-02
157GO:0006006: glucose metabolic process1.85E-02
158GO:0030036: actin cytoskeleton organization1.85E-02
159GO:0010075: regulation of meristem growth1.85E-02
160GO:0010207: photosystem II assembly2.01E-02
161GO:0007166: cell surface receptor signaling pathway2.05E-02
162GO:0008283: cell proliferation2.10E-02
163GO:0009640: photomorphogenesis2.10E-02
164GO:0042546: cell wall biogenesis2.18E-02
165GO:0090351: seedling development2.19E-02
166GO:0010030: positive regulation of seed germination2.19E-02
167GO:0070588: calcium ion transmembrane transport2.19E-02
168GO:0010025: wax biosynthetic process2.36E-02
169GO:0009833: plant-type primary cell wall biogenesis2.36E-02
170GO:0006855: drug transmembrane transport2.45E-02
171GO:0019344: cysteine biosynthetic process2.54E-02
172GO:0051017: actin filament bundle assembly2.54E-02
173GO:0010187: negative regulation of seed germination2.54E-02
174GO:0051302: regulation of cell division2.73E-02
175GO:0006874: cellular calcium ion homeostasis2.73E-02
176GO:0043622: cortical microtubule organization2.73E-02
177GO:0006825: copper ion transport2.73E-02
178GO:0009736: cytokinin-activated signaling pathway2.83E-02
179GO:0006306: DNA methylation2.92E-02
180GO:0016998: cell wall macromolecule catabolic process2.92E-02
181GO:0051603: proteolysis involved in cellular protein catabolic process2.93E-02
182GO:2000022: regulation of jasmonic acid mediated signaling pathway3.11E-02
183GO:0006730: one-carbon metabolic process3.11E-02
184GO:0031348: negative regulation of defense response3.11E-02
185GO:0006417: regulation of translation3.13E-02
186GO:0010082: regulation of root meristem growth3.31E-02
187GO:0001944: vasculature development3.31E-02
188GO:0048367: shoot system development3.45E-02
189GO:0010214: seed coat development3.51E-02
190GO:0019722: calcium-mediated signaling3.51E-02
191GO:0070417: cellular response to cold3.72E-02
192GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.72E-02
193GO:0008284: positive regulation of cell proliferation3.72E-02
194GO:0080167: response to karrikin3.90E-02
195GO:0048653: anther development3.93E-02
196GO:0042631: cellular response to water deprivation3.93E-02
197GO:0042335: cuticle development3.93E-02
198GO:0034220: ion transmembrane transport3.93E-02
199GO:0010087: phloem or xylem histogenesis3.93E-02
200GO:0009735: response to cytokinin3.96E-02
201GO:0006396: RNA processing4.14E-02
202GO:0009741: response to brassinosteroid4.15E-02
203GO:0010268: brassinosteroid homeostasis4.15E-02
204GO:0009958: positive gravitropism4.15E-02
205GO:0006662: glycerol ether metabolic process4.15E-02
206GO:0010182: sugar mediated signaling pathway4.15E-02
207GO:0006342: chromatin silencing4.15E-02
208GO:0046777: protein autophosphorylation4.24E-02
209GO:0009416: response to light stimulus4.50E-02
210GO:0008654: phospholipid biosynthetic process4.59E-02
211GO:0048510: regulation of timing of transition from vegetative to reproductive phase4.81E-02
212GO:0071554: cell wall organization or biogenesis4.81E-02
213GO:0016132: brassinosteroid biosynthetic process4.81E-02
RankGO TermAdjusted P value
1GO:0019136: deoxynucleoside kinase activity0.00E+00
2GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
3GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
4GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
5GO:0015276: ligand-gated ion channel activity0.00E+00
6GO:0004056: argininosuccinate lyase activity0.00E+00
7GO:0004674: protein serine/threonine kinase activity3.37E-04
8GO:0016301: kinase activity4.63E-04
9GO:0000170: sphingosine hydroxylase activity4.67E-04
10GO:0050139: nicotinate-N-glucosyltransferase activity4.67E-04
11GO:0051777: ent-kaurenoate oxidase activity4.67E-04
12GO:0004088: carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity4.67E-04
13GO:0008066: glutamate receptor activity4.67E-04
14GO:0005290: L-histidine transmembrane transporter activity4.67E-04
15GO:0004008: copper-exporting ATPase activity4.67E-04
16GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity4.67E-04
17GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity4.67E-04
18GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.67E-04
19GO:0010313: phytochrome binding4.67E-04
20GO:0004830: tryptophan-tRNA ligase activity4.67E-04
21GO:0043621: protein self-association7.26E-04
22GO:0043425: bHLH transcription factor binding1.01E-03
23GO:0003938: IMP dehydrogenase activity1.01E-03
24GO:0004817: cysteine-tRNA ligase activity1.01E-03
25GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.01E-03
26GO:0042284: sphingolipid delta-4 desaturase activity1.01E-03
27GO:0000064: L-ornithine transmembrane transporter activity1.01E-03
28GO:0050017: L-3-cyanoalanine synthase activity1.01E-03
29GO:0004805: trehalose-phosphatase activity1.16E-03
30GO:0005089: Rho guanyl-nucleotide exchange factor activity1.34E-03
31GO:0070330: aromatase activity1.64E-03
32GO:0032549: ribonucleoside binding1.64E-03
33GO:0005262: calcium channel activity1.74E-03
34GO:0005524: ATP binding2.01E-03
35GO:0004672: protein kinase activity2.19E-03
36GO:0015189: L-lysine transmembrane transporter activity2.38E-03
37GO:0017172: cysteine dioxygenase activity2.38E-03
38GO:0015181: arginine transmembrane transporter activity2.38E-03
39GO:0035197: siRNA binding2.38E-03
40GO:0047627: adenylylsulfatase activity2.38E-03
41GO:0004252: serine-type endopeptidase activity2.87E-03
42GO:0004845: uracil phosphoribosyltransferase activity3.20E-03
43GO:0004345: glucose-6-phosphate dehydrogenase activity3.20E-03
44GO:0080032: methyl jasmonate esterase activity3.20E-03
45GO:0019199: transmembrane receptor protein kinase activity3.20E-03
46GO:0005253: anion channel activity3.20E-03
47GO:0042277: peptide binding3.20E-03
48GO:0046556: alpha-L-arabinofuranosidase activity3.20E-03
49GO:0004176: ATP-dependent peptidase activity3.31E-03
50GO:0033612: receptor serine/threonine kinase binding3.31E-03
51GO:0008408: 3'-5' exonuclease activity3.31E-03
52GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.59E-03
53GO:0004372: glycine hydroxymethyltransferase activity4.10E-03
54GO:0016773: phosphotransferase activity, alcohol group as acceptor4.10E-03
55GO:0018685: alkane 1-monooxygenase activity4.10E-03
56GO:0003727: single-stranded RNA binding4.31E-03
57GO:0004812: aminoacyl-tRNA ligase activity4.67E-03
58GO:2001070: starch binding5.08E-03
59GO:0004605: phosphatidate cytidylyltransferase activity5.08E-03
60GO:1990714: hydroxyproline O-galactosyltransferase activity5.08E-03
61GO:0004709: MAP kinase kinase kinase activity5.08E-03
62GO:0016208: AMP binding5.08E-03
63GO:0008519: ammonium transmembrane transporter activity5.08E-03
64GO:0005247: voltage-gated chloride channel activity5.08E-03
65GO:0004124: cysteine synthase activity6.13E-03
66GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity6.13E-03
67GO:0004849: uridine kinase activity6.13E-03
68GO:0016762: xyloglucan:xyloglucosyl transferase activity6.73E-03
69GO:0019899: enzyme binding7.25E-03
70GO:0003872: 6-phosphofructokinase activity7.25E-03
71GO:0000156: phosphorelay response regulator activity7.67E-03
72GO:0051015: actin filament binding7.67E-03
73GO:0016759: cellulose synthase activity8.17E-03
74GO:0043022: ribosome binding8.44E-03
75GO:0008173: RNA methyltransferase activity9.69E-03
76GO:0005375: copper ion transmembrane transporter activity9.69E-03
77GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity9.69E-03
78GO:0016798: hydrolase activity, acting on glycosyl bonds1.15E-02
79GO:0009672: auxin:proton symporter activity1.24E-02
80GO:0016829: lyase activity1.27E-02
81GO:0015238: drug transmembrane transporter activity1.34E-02
82GO:0004871: signal transducer activity1.52E-02
83GO:0008794: arsenate reductase (glutaredoxin) activity1.53E-02
84GO:0008327: methyl-CpG binding1.53E-02
85GO:0001054: RNA polymerase I activity1.53E-02
86GO:0004521: endoribonuclease activity1.69E-02
87GO:0009982: pseudouridine synthase activity1.85E-02
88GO:0000175: 3'-5'-exoribonuclease activity1.85E-02
89GO:0010329: auxin efflux transmembrane transporter activity1.85E-02
90GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.85E-02
91GO:0004089: carbonate dehydratase activity1.85E-02
92GO:0008083: growth factor activity2.01E-02
93GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.01E-02
94GO:0004185: serine-type carboxypeptidase activity2.10E-02
95GO:0004970: ionotropic glutamate receptor activity2.19E-02
96GO:0005217: intracellular ligand-gated ion channel activity2.19E-02
97GO:0051537: 2 iron, 2 sulfur cluster binding2.27E-02
98GO:0005515: protein binding2.40E-02
99GO:0005528: FK506 binding2.54E-02
100GO:0003714: transcription corepressor activity2.54E-02
101GO:0005345: purine nucleobase transmembrane transporter activity2.73E-02
102GO:0008168: methyltransferase activity2.85E-02
103GO:0016788: hydrolase activity, acting on ester bonds3.06E-02
104GO:0030570: pectate lyase activity3.31E-02
105GO:0016760: cellulose synthase (UDP-forming) activity3.31E-02
106GO:0008514: organic anion transmembrane transporter activity3.51E-02
107GO:0004650: polygalacturonase activity3.68E-02
108GO:0047134: protein-disulfide reductase activity3.72E-02
109GO:0015035: protein disulfide oxidoreductase activity4.14E-02
110GO:0008536: Ran GTPase binding4.15E-02
111GO:0001085: RNA polymerase II transcription factor binding4.15E-02
112GO:0004527: exonuclease activity4.15E-02
113GO:0004791: thioredoxin-disulfide reductase activity4.37E-02
114GO:0010181: FMN binding4.37E-02
<
Gene type



Gene DE type