Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G18245

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0043488: regulation of mRNA stability0.00E+00
2GO:0000455: enzyme-directed rRNA pseudouridine synthesis0.00E+00
3GO:0046460: neutral lipid biosynthetic process0.00E+00
4GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)0.00E+00
5GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
6GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
7GO:0090071: negative regulation of ribosome biogenesis0.00E+00
8GO:0019447: D-cysteine catabolic process0.00E+00
9GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
10GO:0042407: cristae formation0.00E+00
11GO:0042817: pyridoxal metabolic process0.00E+00
12GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
13GO:0090042: tubulin deacetylation0.00E+00
14GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
15GO:0006399: tRNA metabolic process0.00E+00
16GO:0015843: methylammonium transport0.00E+00
17GO:0009658: chloroplast organization1.17E-11
18GO:0042793: transcription from plastid promoter8.62E-08
19GO:0009734: auxin-activated signaling pathway4.83E-07
20GO:0046620: regulation of organ growth3.54E-05
21GO:0009657: plastid organization4.97E-05
22GO:0000373: Group II intron splicing6.72E-05
23GO:0009733: response to auxin7.31E-05
24GO:2000012: regulation of auxin polar transport2.07E-04
25GO:0010020: chloroplast fission2.46E-04
26GO:0040008: regulation of growth2.82E-04
27GO:0030488: tRNA methylation4.65E-04
28GO:0010729: positive regulation of hydrogen peroxide biosynthetic process5.51E-04
29GO:0006419: alanyl-tRNA aminoacylation5.51E-04
30GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process5.51E-04
31GO:0006438: valyl-tRNA aminoacylation5.51E-04
32GO:0043266: regulation of potassium ion transport5.51E-04
33GO:0010480: microsporocyte differentiation5.51E-04
34GO:0042371: vitamin K biosynthetic process5.51E-04
35GO:2000021: regulation of ion homeostasis5.51E-04
36GO:0043609: regulation of carbon utilization5.51E-04
37GO:0006436: tryptophanyl-tRNA aminoacylation5.51E-04
38GO:0000066: mitochondrial ornithine transport5.51E-04
39GO:1902458: positive regulation of stomatal opening5.51E-04
40GO:0050801: ion homeostasis5.51E-04
41GO:0006730: one-carbon metabolic process5.60E-04
42GO:0006400: tRNA modification5.95E-04
43GO:0006353: DNA-templated transcription, termination7.41E-04
44GO:0006002: fructose 6-phosphate metabolic process9.02E-04
45GO:0009793: embryo development ending in seed dormancy9.30E-04
46GO:0009926: auxin polar transport9.42E-04
47GO:0006420: arginyl-tRNA aminoacylation1.19E-03
48GO:0006739: NADP metabolic process1.19E-03
49GO:0060359: response to ammonium ion1.19E-03
50GO:1902326: positive regulation of chlorophyll biosynthetic process1.19E-03
51GO:0018026: peptidyl-lysine monomethylation1.19E-03
52GO:0071497: cellular response to freezing1.19E-03
53GO:0006423: cysteinyl-tRNA aminoacylation1.19E-03
54GO:0042325: regulation of phosphorylation1.19E-03
55GO:0009220: pyrimidine ribonucleotide biosynthetic process1.19E-03
56GO:1904143: positive regulation of carotenoid biosynthetic process1.19E-03
57GO:1903426: regulation of reactive oxygen species biosynthetic process1.19E-03
58GO:1900865: chloroplast RNA modification1.27E-03
59GO:0010583: response to cyclopentenone1.33E-03
60GO:0009451: RNA modification1.45E-03
61GO:0045036: protein targeting to chloroplast1.48E-03
62GO:0009828: plant-type cell wall loosening1.56E-03
63GO:0010447: response to acidic pH1.95E-03
64GO:0051127: positive regulation of actin nucleation1.95E-03
65GO:0006954: inflammatory response1.95E-03
66GO:0019419: sulfate reduction1.95E-03
67GO:0006000: fructose metabolic process1.95E-03
68GO:0006760: folic acid-containing compound metabolic process1.95E-03
69GO:0043157: response to cation stress1.95E-03
70GO:0005977: glycogen metabolic process1.95E-03
71GO:0045037: protein import into chloroplast stroma1.97E-03
72GO:0010207: photosystem II assembly2.52E-03
73GO:0051639: actin filament network formation2.82E-03
74GO:0010239: chloroplast mRNA processing2.82E-03
75GO:0008615: pyridoxine biosynthetic process2.82E-03
76GO:0044211: CTP salvage2.82E-03
77GO:0015696: ammonium transport2.82E-03
78GO:0046739: transport of virus in multicellular host2.82E-03
79GO:2000904: regulation of starch metabolic process2.82E-03
80GO:0043572: plastid fission2.82E-03
81GO:0016556: mRNA modification2.82E-03
82GO:2001141: regulation of RNA biosynthetic process2.82E-03
83GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.82E-03
84GO:1902476: chloride transmembrane transport2.82E-03
85GO:0019344: cysteine biosynthetic process3.51E-03
86GO:0005992: trehalose biosynthetic process3.51E-03
87GO:0007275: multicellular organism development3.61E-03
88GO:0051764: actin crosslink formation3.81E-03
89GO:0015846: polyamine transport3.81E-03
90GO:0046656: folic acid biosynthetic process3.81E-03
91GO:0072488: ammonium transmembrane transport3.81E-03
92GO:0022622: root system development3.81E-03
93GO:0006734: NADH metabolic process3.81E-03
94GO:0044205: 'de novo' UMP biosynthetic process3.81E-03
95GO:0044206: UMP salvage3.81E-03
96GO:0010021: amylopectin biosynthetic process3.81E-03
97GO:1901141: regulation of lignin biosynthetic process3.81E-03
98GO:0006418: tRNA aminoacylation for protein translation3.87E-03
99GO:0006839: mitochondrial transport4.41E-03
100GO:0009790: embryo development4.56E-03
101GO:0016123: xanthophyll biosynthetic process4.88E-03
102GO:0010158: abaxial cell fate specification4.88E-03
103GO:0009904: chloroplast accumulation movement4.88E-03
104GO:0010236: plastoquinone biosynthetic process4.88E-03
105GO:0045038: protein import into chloroplast thylakoid membrane4.88E-03
106GO:0009107: lipoate biosynthetic process4.88E-03
107GO:0009959: negative gravitropism6.06E-03
108GO:0006655: phosphatidylglycerol biosynthetic process6.06E-03
109GO:0016554: cytidine to uridine editing6.06E-03
110GO:0006206: pyrimidine nucleobase metabolic process6.06E-03
111GO:0032973: amino acid export6.06E-03
112GO:0009228: thiamine biosynthetic process6.06E-03
113GO:0008033: tRNA processing6.50E-03
114GO:0009741: response to brassinosteroid7.01E-03
115GO:2000067: regulation of root morphogenesis7.32E-03
116GO:0042372: phylloquinone biosynthetic process7.32E-03
117GO:0006458: 'de novo' protein folding7.32E-03
118GO:0017148: negative regulation of translation7.32E-03
119GO:0042026: protein refolding7.32E-03
120GO:0009942: longitudinal axis specification7.32E-03
121GO:0034389: lipid particle organization7.32E-03
122GO:0046654: tetrahydrofolate biosynthetic process7.32E-03
123GO:0009903: chloroplast avoidance movement7.32E-03
124GO:1901259: chloroplast rRNA processing7.32E-03
125GO:0080086: stamen filament development7.32E-03
126GO:0007050: cell cycle arrest8.66E-03
127GO:0009772: photosynthetic electron transport in photosystem II8.66E-03
128GO:0043090: amino acid import8.66E-03
129GO:0006821: chloride transport8.66E-03
130GO:0010050: vegetative phase change8.66E-03
131GO:0048437: floral organ development8.66E-03
132GO:0010196: nonphotochemical quenching8.66E-03
133GO:0030307: positive regulation of cell growth8.66E-03
134GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process8.66E-03
135GO:0032880: regulation of protein localization8.66E-03
136GO:0032502: developmental process9.28E-03
137GO:0009630: gravitropism9.28E-03
138GO:0048564: photosystem I assembly1.01E-02
139GO:0001522: pseudouridine synthesis1.01E-02
140GO:0009850: auxin metabolic process1.01E-02
141GO:0009704: de-etiolation1.01E-02
142GO:0042255: ribosome assembly1.01E-02
143GO:0070413: trehalose metabolism in response to stress1.01E-02
144GO:2000070: regulation of response to water deprivation1.01E-02
145GO:0009932: cell tip growth1.16E-02
146GO:0071482: cellular response to light stimulus1.16E-02
147GO:0006526: arginine biosynthetic process1.16E-02
148GO:0010497: plasmodesmata-mediated intercellular transport1.16E-02
149GO:0032544: plastid translation1.16E-02
150GO:0007389: pattern specification process1.16E-02
151GO:0010027: thylakoid membrane organization1.26E-02
152GO:0009742: brassinosteroid mediated signaling pathway1.28E-02
153GO:0080144: amino acid homeostasis1.32E-02
154GO:0006098: pentose-phosphate shunt1.32E-02
155GO:0019432: triglyceride biosynthetic process1.32E-02
156GO:0006974: cellular response to DNA damage stimulus1.41E-02
157GO:0042761: very long-chain fatty acid biosynthetic process1.48E-02
158GO:0009638: phototropism1.48E-02
159GO:0043067: regulation of programmed cell death1.48E-02
160GO:0010411: xyloglucan metabolic process1.49E-02
161GO:0006259: DNA metabolic process1.66E-02
162GO:0006535: cysteine biosynthetic process from serine1.66E-02
163GO:0000103: sulfate assimilation1.66E-02
164GO:0006949: syncytium formation1.66E-02
165GO:0010015: root morphogenesis1.84E-02
166GO:0006265: DNA topological change1.84E-02
167GO:1903507: negative regulation of nucleic acid-templated transcription1.84E-02
168GO:0006352: DNA-templated transcription, initiation1.84E-02
169GO:0006415: translational termination1.84E-02
170GO:0048229: gametophyte development1.84E-02
171GO:0016024: CDP-diacylglycerol biosynthetic process2.02E-02
172GO:0010582: floral meristem determinacy2.02E-02
173GO:0009637: response to blue light2.10E-02
174GO:0009785: blue light signaling pathway2.22E-02
175GO:0009691: cytokinin biosynthetic process2.22E-02
176GO:0030036: actin cytoskeleton organization2.22E-02
177GO:0010075: regulation of meristem growth2.22E-02
178GO:0006094: gluconeogenesis2.22E-02
179GO:0009416: response to light stimulus2.34E-02
180GO:0009934: regulation of meristem structural organization2.42E-02
181GO:0010039: response to iron ion2.62E-02
182GO:0006508: proteolysis2.62E-02
183GO:0090351: seedling development2.62E-02
184GO:0006810: transport2.64E-02
185GO:0010114: response to red light2.71E-02
186GO:0042546: cell wall biogenesis2.82E-02
187GO:0010025: wax biosynthetic process2.83E-02
188GO:0006071: glycerol metabolic process2.83E-02
189GO:0009116: nucleoside metabolic process3.05E-02
190GO:0000027: ribosomal large subunit assembly3.05E-02
191GO:0051017: actin filament bundle assembly3.05E-02
192GO:0030150: protein import into mitochondrial matrix3.05E-02
193GO:0071555: cell wall organization3.05E-02
194GO:0019953: sexual reproduction3.27E-02
195GO:0016575: histone deacetylation3.27E-02
196GO:0009664: plant-type cell wall organization3.40E-02
197GO:0061077: chaperone-mediated protein folding3.50E-02
198GO:0016998: cell wall macromolecule catabolic process3.50E-02
199GO:0016226: iron-sulfur cluster assembly3.73E-02
200GO:2000022: regulation of jasmonic acid mediated signaling pathway3.73E-02
201GO:0007005: mitochondrion organization3.73E-02
202GO:0031348: negative regulation of defense response3.73E-02
203GO:0080092: regulation of pollen tube growth3.73E-02
204GO:0009826: unidimensional cell growth3.91E-02
205GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.97E-02
206GO:0010082: regulation of root meristem growth3.97E-02
207GO:0009693: ethylene biosynthetic process3.97E-02
208GO:0042254: ribosome biogenesis4.19E-02
209GO:0010091: trichome branching4.21E-02
210GO:0009306: protein secretion4.21E-02
211GO:0006096: glycolytic process4.30E-02
212GO:0016117: carotenoid biosynthetic process4.46E-02
213GO:0008284: positive regulation of cell proliferation4.46E-02
214GO:0009789: positive regulation of abscisic acid-activated signaling pathway4.46E-02
215GO:0048653: anther development4.71E-02
216GO:0009958: positive gravitropism4.97E-02
217GO:0006662: glycerol ether metabolic process4.97E-02
218GO:0010197: polar nucleus fusion4.97E-02
219GO:0048868: pollen tube development4.97E-02
RankGO TermAdjusted P value
1GO:0008660: 1-aminocyclopropane-1-carboxylate deaminase activity0.00E+00
2GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
3GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
4GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
5GO:0019808: polyamine binding0.00E+00
6GO:0019148: D-cysteine desulfhydrase activity0.00E+00
7GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
8GO:0043014: alpha-tubulin binding0.00E+00
9GO:0051721: protein phosphatase 2A binding0.00E+00
10GO:0042903: tubulin deacetylase activity0.00E+00
11GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
12GO:0004056: argininosuccinate lyase activity0.00E+00
13GO:0004358: glutamate N-acetyltransferase activity0.00E+00
14GO:0004326: tetrahydrofolylpolyglutamate synthase activity1.33E-05
15GO:0003723: RNA binding2.81E-05
16GO:0004519: endonuclease activity2.34E-04
17GO:0004176: ATP-dependent peptidase activity4.98E-04
18GO:0050139: nicotinate-N-glucosyltransferase activity5.51E-04
19GO:0005227: calcium activated cation channel activity5.51E-04
20GO:0004733: pyridoxamine-phosphate oxidase activity5.51E-04
21GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity5.51E-04
22GO:0004813: alanine-tRNA ligase activity5.51E-04
23GO:0005290: L-histidine transmembrane transporter activity5.51E-04
24GO:0003867: 4-aminobutyrate transaminase activity5.51E-04
25GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity5.51E-04
26GO:0004832: valine-tRNA ligase activity5.51E-04
27GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity5.51E-04
28GO:0052381: tRNA dimethylallyltransferase activity5.51E-04
29GO:0052857: NADPHX epimerase activity5.51E-04
30GO:0052856: NADHX epimerase activity5.51E-04
31GO:0004830: tryptophan-tRNA ligase activity5.51E-04
32GO:0019843: rRNA binding7.90E-04
33GO:0043621: protein self-association1.06E-03
34GO:0016415: octanoyltransferase activity1.19E-03
35GO:0004047: aminomethyltransferase activity1.19E-03
36GO:0102083: 7,8-dihydromonapterin aldolase activity1.19E-03
37GO:0009973: adenylyl-sulfate reductase activity1.19E-03
38GO:0004817: cysteine-tRNA ligase activity1.19E-03
39GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.19E-03
40GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity1.19E-03
41GO:0019156: isoamylase activity1.19E-03
42GO:0004150: dihydroneopterin aldolase activity1.19E-03
43GO:0000064: L-ornithine transmembrane transporter activity1.19E-03
44GO:0010291: carotene beta-ring hydroxylase activity1.19E-03
45GO:0017118: lipoyltransferase activity1.19E-03
46GO:0004814: arginine-tRNA ligase activity1.19E-03
47GO:0009977: proton motive force dependent protein transmembrane transporter activity1.19E-03
48GO:0033741: adenylyl-sulfate reductase (glutathione) activity1.19E-03
49GO:0004805: trehalose-phosphatase activity1.48E-03
50GO:0008237: metallopeptidase activity1.69E-03
51GO:0046524: sucrose-phosphate synthase activity1.95E-03
52GO:0070330: aromatase activity1.95E-03
53GO:0004557: alpha-galactosidase activity1.95E-03
54GO:0052692: raffinose alpha-galactosidase activity1.95E-03
55GO:0009982: pseudouridine synthase activity2.24E-03
56GO:0015189: L-lysine transmembrane transporter activity2.82E-03
57GO:0048487: beta-tubulin binding2.82E-03
58GO:0015181: arginine transmembrane transporter activity2.82E-03
59GO:0043023: ribosomal large subunit binding2.82E-03
60GO:0016614: oxidoreductase activity, acting on CH-OH group of donors3.31E-03
61GO:0016987: sigma factor activity3.81E-03
62GO:0005253: anion channel activity3.81E-03
63GO:0004659: prenyltransferase activity3.81E-03
64GO:0016279: protein-lysine N-methyltransferase activity3.81E-03
65GO:0001053: plastid sigma factor activity3.81E-03
66GO:0004845: uracil phosphoribosyltransferase activity3.81E-03
67GO:0018685: alkane 1-monooxygenase activity4.88E-03
68GO:0016773: phosphotransferase activity, alcohol group as acceptor4.88E-03
69GO:0004812: aminoacyl-tRNA ligase activity6.01E-03
70GO:0004605: phosphatidate cytidylyltransferase activity6.06E-03
71GO:0080030: methyl indole-3-acetate esterase activity6.06E-03
72GO:0004332: fructose-bisphosphate aldolase activity6.06E-03
73GO:0004556: alpha-amylase activity6.06E-03
74GO:0008519: ammonium transmembrane transporter activity6.06E-03
75GO:0005247: voltage-gated chloride channel activity6.06E-03
76GO:2001070: starch binding6.06E-03
77GO:0004124: cysteine synthase activity7.32E-03
78GO:0008195: phosphatidate phosphatase activity7.32E-03
79GO:0004849: uridine kinase activity7.32E-03
80GO:0003730: mRNA 3'-UTR binding7.32E-03
81GO:0004144: diacylglycerol O-acyltransferase activity7.32E-03
82GO:0004723: calcium-dependent protein serine/threonine phosphatase activity7.32E-03
83GO:0010181: FMN binding7.55E-03
84GO:0003872: 6-phosphofructokinase activity8.66E-03
85GO:0016762: xyloglucan:xyloglucosyl transferase activity8.68E-03
86GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor9.91E-03
87GO:0043022: ribosome binding1.01E-02
88GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)1.16E-02
89GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.16E-02
90GO:0003747: translation release factor activity1.32E-02
91GO:0009672: auxin:proton symporter activity1.48E-02
92GO:0016798: hydrolase activity, acting on glycosyl bonds1.49E-02
93GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity1.65E-02
94GO:0016829: lyase activity1.75E-02
95GO:0004222: metalloendopeptidase activity1.82E-02
96GO:0005089: Rho guanyl-nucleotide exchange factor activity1.84E-02
97GO:0044183: protein binding involved in protein folding1.84E-02
98GO:0000976: transcription regulatory region sequence-specific DNA binding2.02E-02
99GO:0000049: tRNA binding2.02E-02
100GO:0003993: acid phosphatase activity2.19E-02
101GO:0019888: protein phosphatase regulator activity2.22E-02
102GO:0010329: auxin efflux transmembrane transporter activity2.22E-02
103GO:0015266: protein channel activity2.22E-02
104GO:0004089: carbonate dehydratase activity2.22E-02
105GO:0008083: growth factor activity2.42E-02
106GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.83E-02
107GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.83E-02
108GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.83E-02
109GO:0004407: histone deacetylase activity3.05E-02
110GO:0003714: transcription corepressor activity3.05E-02
111GO:0051536: iron-sulfur cluster binding3.05E-02
112GO:0009055: electron carrier activity3.14E-02
113GO:0016740: transferase activity3.27E-02
114GO:0015079: potassium ion transmembrane transporter activity3.27E-02
115GO:0005345: purine nucleobase transmembrane transporter activity3.27E-02
116GO:0033612: receptor serine/threonine kinase binding3.50E-02
117GO:0004707: MAP kinase activity3.50E-02
118GO:0003964: RNA-directed DNA polymerase activity3.50E-02
119GO:0008408: 3'-5' exonuclease activity3.50E-02
120GO:0003690: double-stranded DNA binding3.77E-02
121GO:0030570: pectate lyase activity3.97E-02
122GO:0003727: single-stranded RNA binding4.21E-02
123GO:0047134: protein-disulfide reductase activity4.46E-02
124GO:0004650: polygalacturonase activity4.72E-02
125GO:0050660: flavin adenine dinucleotide binding4.89E-02
126GO:0008536: Ran GTPase binding4.97E-02
127GO:0004527: exonuclease activity4.97E-02
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Gene type



Gene DE type