Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G15890

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1903508: positive regulation of nucleic acid-templated transcription0.00E+00
2GO:0071474: cellular hyperosmotic response0.00E+00
3GO:0018023: peptidyl-lysine trimethylation0.00E+00
4GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
5GO:0006982: response to lipid hydroperoxide0.00E+00
6GO:0002184: cytoplasmic translational termination0.00E+00
7GO:0010335: response to non-ionic osmotic stress0.00E+00
8GO:0031054: pre-miRNA processing0.00E+00
9GO:0033494: ferulate metabolic process0.00E+00
10GO:0090279: regulation of calcium ion import0.00E+00
11GO:0042820: vitamin B6 catabolic process0.00E+00
12GO:0042821: pyridoxal biosynthetic process0.00E+00
13GO:0015882: L-ascorbic acid transport0.00E+00
14GO:0006021: inositol biosynthetic process5.13E-07
15GO:0055114: oxidation-reduction process9.84E-05
16GO:0009904: chloroplast accumulation movement1.04E-04
17GO:0046855: inositol phosphate dephosphorylation1.50E-04
18GO:0010190: cytochrome b6f complex assembly1.50E-04
19GO:0009903: chloroplast avoidance movement2.05E-04
20GO:1904964: positive regulation of phytol biosynthetic process3.22E-04
21GO:0043686: co-translational protein modification3.22E-04
22GO:0043087: regulation of GTPase activity3.22E-04
23GO:0071461: cellular response to redox state3.22E-04
24GO:1902458: positive regulation of stomatal opening3.22E-04
25GO:0010028: xanthophyll cycle3.22E-04
26GO:0034337: RNA folding3.22E-04
27GO:0009443: pyridoxal 5'-phosphate salvage3.22E-04
28GO:0010362: negative regulation of anion channel activity by blue light3.22E-04
29GO:0015969: guanosine tetraphosphate metabolic process3.22E-04
30GO:1902478: negative regulation of defense response to bacterium, incompatible interaction3.22E-04
31GO:0031426: polycistronic mRNA processing3.22E-04
32GO:1904966: positive regulation of vitamin E biosynthetic process3.22E-04
33GO:0000481: maturation of 5S rRNA3.22E-04
34GO:0006659: phosphatidylserine biosynthetic process3.22E-04
35GO:0016559: peroxisome fission3.36E-04
36GO:0009791: post-embryonic development4.06E-04
37GO:0071482: cellular response to light stimulus4.12E-04
38GO:0010206: photosystem II repair4.95E-04
39GO:0010155: regulation of proton transport7.02E-04
40GO:1903426: regulation of reactive oxygen species biosynthetic process7.02E-04
41GO:0051262: protein tetramerization7.02E-04
42GO:0080005: photosystem stoichiometry adjustment7.02E-04
43GO:0042819: vitamin B6 biosynthetic process7.02E-04
44GO:1902326: positive regulation of chlorophyll biosynthetic process7.02E-04
45GO:0030187: melatonin biosynthetic process7.02E-04
46GO:0010541: acropetal auxin transport7.02E-04
47GO:0018026: peptidyl-lysine monomethylation7.02E-04
48GO:0006435: threonyl-tRNA aminoacylation7.02E-04
49GO:0010027: thylakoid membrane organization7.12E-04
50GO:0018119: peptidyl-cysteine S-nitrosylation7.88E-04
51GO:0006352: DNA-templated transcription, initiation7.88E-04
52GO:0006790: sulfur compound metabolic process8.99E-04
53GO:0016024: CDP-diacylglycerol biosynthetic process8.99E-04
54GO:0018298: protein-chromophore linkage9.92E-04
55GO:0044375: regulation of peroxisome size1.14E-03
56GO:0045493: xylan catabolic process1.14E-03
57GO:2001295: malonyl-CoA biosynthetic process1.14E-03
58GO:0000913: preprophase band assembly1.14E-03
59GO:0033591: response to L-ascorbic acid1.14E-03
60GO:0031022: nuclear migration along microfilament1.14E-03
61GO:0010207: photosystem II assembly1.14E-03
62GO:0010143: cutin biosynthetic process1.14E-03
63GO:0010589: leaf proximal/distal pattern formation1.14E-03
64GO:0034051: negative regulation of plant-type hypersensitive response1.14E-03
65GO:0009405: pathogenesis1.14E-03
66GO:0080055: low-affinity nitrate transport1.14E-03
67GO:0010160: formation of animal organ boundary1.14E-03
68GO:0044550: secondary metabolite biosynthetic process1.21E-03
69GO:0046854: phosphatidylinositol phosphorylation1.28E-03
70GO:0015979: photosynthesis1.32E-03
71GO:0009637: response to blue light1.33E-03
72GO:0009416: response to light stimulus1.58E-03
73GO:2001141: regulation of RNA biosynthetic process1.63E-03
74GO:0006166: purine ribonucleoside salvage1.63E-03
75GO:0006020: inositol metabolic process1.63E-03
76GO:0009102: biotin biosynthetic process1.63E-03
77GO:0009152: purine ribonucleotide biosynthetic process1.63E-03
78GO:0046653: tetrahydrofolate metabolic process1.63E-03
79GO:0010239: chloroplast mRNA processing1.63E-03
80GO:0033014: tetrapyrrole biosynthetic process1.63E-03
81GO:0043481: anthocyanin accumulation in tissues in response to UV light1.63E-03
82GO:0008615: pyridoxine biosynthetic process1.63E-03
83GO:0046739: transport of virus in multicellular host1.63E-03
84GO:0006168: adenine salvage1.63E-03
85GO:0042823: pyridoxal phosphate biosynthetic process1.63E-03
86GO:0019748: secondary metabolic process2.09E-03
87GO:0009765: photosynthesis, light harvesting2.19E-03
88GO:2000306: positive regulation of photomorphogenesis2.19E-03
89GO:0035279: mRNA cleavage involved in gene silencing by miRNA2.19E-03
90GO:0015994: chlorophyll metabolic process2.19E-03
91GO:0071483: cellular response to blue light2.19E-03
92GO:0008295: spermidine biosynthetic process2.19E-03
93GO:0031365: N-terminal protein amino acid modification2.80E-03
94GO:0016123: xanthophyll biosynthetic process2.80E-03
95GO:0044209: AMP salvage2.80E-03
96GO:0006564: L-serine biosynthetic process2.80E-03
97GO:0016120: carotene biosynthetic process2.80E-03
98GO:0010236: plastoquinone biosynthetic process2.80E-03
99GO:0045038: protein import into chloroplast thylakoid membrane2.80E-03
100GO:0009658: chloroplast organization3.32E-03
101GO:0007018: microtubule-based movement3.35E-03
102GO:0006508: proteolysis3.41E-03
103GO:0010405: arabinogalactan protein metabolic process3.46E-03
104GO:0010264: myo-inositol hexakisphosphate biosynthetic process3.46E-03
105GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.46E-03
106GO:0006655: phosphatidylglycerol biosynthetic process3.46E-03
107GO:0060918: auxin transport3.46E-03
108GO:0045962: positive regulation of development, heterochronic3.46E-03
109GO:0009920: cell plate formation involved in plant-type cell wall biogenesis3.46E-03
110GO:0018258: protein O-linked glycosylation via hydroxyproline3.46E-03
111GO:0016032: viral process4.11E-03
112GO:0048280: vesicle fusion with Golgi apparatus4.17E-03
113GO:0030488: tRNA methylation4.17E-03
114GO:0035196: production of miRNAs involved in gene silencing by miRNA4.92E-03
115GO:0009395: phospholipid catabolic process4.92E-03
116GO:2000070: regulation of response to water deprivation5.71E-03
117GO:0007155: cell adhesion5.71E-03
118GO:0006605: protein targeting5.71E-03
119GO:0032508: DNA duplex unwinding5.71E-03
120GO:0022900: electron transport chain6.55E-03
121GO:0015996: chlorophyll catabolic process6.55E-03
122GO:0007186: G-protein coupled receptor signaling pathway6.55E-03
123GO:0032544: plastid translation6.55E-03
124GO:0015995: chlorophyll biosynthetic process6.56E-03
125GO:0098656: anion transmembrane transport7.42E-03
126GO:0006783: heme biosynthetic process7.42E-03
127GO:0048507: meristem development7.42E-03
128GO:0006633: fatty acid biosynthetic process7.50E-03
129GO:0006811: ion transport8.02E-03
130GO:0009638: phototropism8.34E-03
131GO:0010267: production of ta-siRNAs involved in RNA interference8.34E-03
132GO:0006779: porphyrin-containing compound biosynthetic process8.34E-03
133GO:0007568: aging8.41E-03
134GO:0043069: negative regulation of programmed cell death9.30E-03
135GO:0045036: protein targeting to chloroplast9.30E-03
136GO:0006896: Golgi to vacuole transport9.30E-03
137GO:0006535: cysteine biosynthetic process from serine9.30E-03
138GO:0000038: very long-chain fatty acid metabolic process1.03E-02
139GO:0019684: photosynthesis, light reaction1.03E-02
140GO:0009089: lysine biosynthetic process via diaminopimelate1.03E-02
141GO:0008361: regulation of cell size1.13E-02
142GO:0045037: protein import into chloroplast stroma1.13E-02
143GO:0030036: actin cytoskeleton organization1.24E-02
144GO:0009718: anthocyanin-containing compound biosynthetic process1.24E-02
145GO:0009767: photosynthetic electron transport chain1.24E-02
146GO:0030048: actin filament-based movement1.24E-02
147GO:0009785: blue light signaling pathway1.24E-02
148GO:0006006: glucose metabolic process1.24E-02
149GO:0019253: reductive pentose-phosphate cycle1.35E-02
150GO:0010540: basipetal auxin transport1.35E-02
151GO:0009266: response to temperature stimulus1.35E-02
152GO:0006541: glutamine metabolic process1.35E-02
153GO:0010020: chloroplast fission1.35E-02
154GO:0090351: seedling development1.46E-02
155GO:0007031: peroxisome organization1.46E-02
156GO:0042343: indole glucosinolate metabolic process1.46E-02
157GO:0019853: L-ascorbic acid biosynthetic process1.46E-02
158GO:0000162: tryptophan biosynthetic process1.58E-02
159GO:0006636: unsaturated fatty acid biosynthetic process1.58E-02
160GO:0019344: cysteine biosynthetic process1.70E-02
161GO:0080147: root hair cell development1.70E-02
162GO:0006289: nucleotide-excision repair1.70E-02
163GO:0006857: oligopeptide transport1.73E-02
164GO:0008299: isoprenoid biosynthetic process1.83E-02
165GO:0009768: photosynthesis, light harvesting in photosystem I1.83E-02
166GO:0048511: rhythmic process1.95E-02
167GO:0098542: defense response to other organism1.95E-02
168GO:0080092: regulation of pollen tube growth2.08E-02
169GO:0048443: stamen development2.35E-02
170GO:0019722: calcium-mediated signaling2.35E-02
171GO:0009306: protein secretion2.35E-02
172GO:0009742: brassinosteroid mediated signaling pathway2.44E-02
173GO:0016117: carotenoid biosynthetic process2.49E-02
174GO:0042147: retrograde transport, endosome to Golgi2.49E-02
175GO:0010305: leaf vascular tissue pattern formation2.78E-02
176GO:0010182: sugar mediated signaling pathway2.78E-02
177GO:0009741: response to brassinosteroid2.78E-02
178GO:0009958: positive gravitropism2.78E-02
179GO:0006520: cellular amino acid metabolic process2.78E-02
180GO:0045489: pectin biosynthetic process2.78E-02
181GO:0009646: response to absence of light2.92E-02
182GO:0008654: phospholipid biosynthetic process3.07E-02
183GO:0006623: protein targeting to vacuole3.07E-02
184GO:0006891: intra-Golgi vesicle-mediated transport3.23E-02
185GO:0007264: small GTPase mediated signal transduction3.38E-02
186GO:0010583: response to cyclopentenone3.38E-02
187GO:0030163: protein catabolic process3.54E-02
188GO:0009639: response to red or far red light3.70E-02
189GO:0006413: translational initiation3.70E-02
190GO:0007267: cell-cell signaling3.86E-02
191GO:0007623: circadian rhythm3.96E-02
192GO:0000910: cytokinesis4.03E-02
193GO:0016126: sterol biosynthetic process4.19E-02
194GO:0009627: systemic acquired resistance4.53E-02
195GO:0006888: ER to Golgi vesicle-mediated transport4.71E-02
196GO:0010411: xyloglucan metabolic process4.71E-02
197GO:0016311: dephosphorylation4.88E-02
RankGO TermAdjusted P value
1GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity0.00E+00
2GO:0004076: biotin synthase activity0.00E+00
3GO:0004059: aralkylamine N-acetyltransferase activity0.00E+00
4GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
5GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
6GO:0050613: delta14-sterol reductase activity0.00E+00
7GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
8GO:0015229: L-ascorbic acid transporter activity0.00E+00
9GO:0045435: lycopene epsilon cyclase activity0.00E+00
10GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
11GO:0052832: inositol monophosphate 3-phosphatase activity4.70E-06
12GO:0008934: inositol monophosphate 1-phosphatase activity4.70E-06
13GO:0052833: inositol monophosphate 4-phosphatase activity4.70E-06
14GO:0070402: NADPH binding1.67E-05
15GO:0001053: plastid sigma factor activity6.61E-05
16GO:0016987: sigma factor activity6.61E-05
17GO:0000293: ferric-chelate reductase activity1.50E-04
18GO:0004366: glycerol-3-phosphate O-acyltransferase activity1.50E-04
19GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity2.05E-04
20GO:0004328: formamidase activity3.22E-04
21GO:0010347: L-galactose-1-phosphate phosphatase activity3.22E-04
22GO:0005227: calcium activated cation channel activity3.22E-04
23GO:0009496: plastoquinol--plastocyanin reductase activity3.22E-04
24GO:0080132: fatty acid alpha-hydroxylase activity3.22E-04
25GO:0004325: ferrochelatase activity3.22E-04
26GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.22E-04
27GO:0042586: peptide deformylase activity3.22E-04
28GO:0005525: GTP binding3.68E-04
29GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity7.02E-04
30GO:0048531: beta-1,3-galactosyltransferase activity7.02E-04
31GO:0050017: L-3-cyanoalanine synthase activity7.02E-04
32GO:0042389: omega-3 fatty acid desaturase activity7.02E-04
33GO:0004617: phosphoglycerate dehydrogenase activity7.02E-04
34GO:0004766: spermidine synthase activity7.02E-04
35GO:0004829: threonine-tRNA ligase activity7.02E-04
36GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase7.02E-04
37GO:0008728: GTP diphosphokinase activity7.02E-04
38GO:0004512: inositol-3-phosphate synthase activity7.02E-04
39GO:0036381: pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity7.02E-04
40GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.14E-03
41GO:0008864: formyltetrahydrofolate deformylase activity1.14E-03
42GO:0004049: anthranilate synthase activity1.14E-03
43GO:0080054: low-affinity nitrate transmembrane transporter activity1.14E-03
44GO:0005504: fatty acid binding1.14E-03
45GO:0050734: hydroxycinnamoyltransferase activity1.14E-03
46GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.14E-03
47GO:0003913: DNA photolyase activity1.14E-03
48GO:0004148: dihydrolipoyl dehydrogenase activity1.14E-03
49GO:0004075: biotin carboxylase activity1.14E-03
50GO:0003993: acid phosphatase activity1.41E-03
51GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.63E-03
52GO:0016851: magnesium chelatase activity1.63E-03
53GO:0009882: blue light photoreceptor activity1.63E-03
54GO:0043023: ribosomal large subunit binding1.63E-03
55GO:0035198: miRNA binding1.63E-03
56GO:0003999: adenine phosphoribosyltransferase activity1.63E-03
57GO:0048027: mRNA 5'-UTR binding1.63E-03
58GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides1.63E-03
59GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen1.65E-03
60GO:0004185: serine-type carboxypeptidase activity1.84E-03
61GO:0003924: GTPase activity2.08E-03
62GO:0046556: alpha-L-arabinofuranosidase activity2.19E-03
63GO:0016279: protein-lysine N-methyltransferase activity2.19E-03
64GO:0070628: proteasome binding2.19E-03
65GO:0045430: chalcone isomerase activity2.19E-03
66GO:0009044: xylan 1,4-beta-xylosidase activity2.19E-03
67GO:0043495: protein anchor2.19E-03
68GO:0042802: identical protein binding2.46E-03
69GO:0003989: acetyl-CoA carboxylase activity2.80E-03
70GO:0042578: phosphoric ester hydrolase activity3.46E-03
71GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.46E-03
72GO:1990714: hydroxyproline O-galactosyltransferase activity3.46E-03
73GO:0031593: polyubiquitin binding3.46E-03
74GO:0035673: oligopeptide transmembrane transporter activity3.46E-03
75GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups3.47E-03
76GO:0009927: histidine phosphotransfer kinase activity4.17E-03
77GO:0004124: cysteine synthase activity4.17E-03
78GO:0016832: aldehyde-lyase activity4.17E-03
79GO:0005261: cation channel activity4.17E-03
80GO:0004723: calcium-dependent protein serine/threonine phosphatase activity4.17E-03
81GO:0009881: photoreceptor activity4.92E-03
82GO:0019899: enzyme binding4.92E-03
83GO:0043022: ribosome binding5.71E-03
84GO:0004033: aldo-keto reductase (NADP) activity5.71E-03
85GO:0016168: chlorophyll binding5.89E-03
86GO:0005506: iron ion binding6.17E-03
87GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water6.55E-03
88GO:0008135: translation factor activity, RNA binding6.55E-03
89GO:0008173: RNA methyltransferase activity6.55E-03
90GO:0008236: serine-type peptidase activity6.91E-03
91GO:0016614: oxidoreductase activity, acting on CH-OH group of donors8.41E-03
92GO:0008017: microtubule binding8.96E-03
93GO:0008559: xenobiotic-transporting ATPase activity1.03E-02
94GO:0005089: Rho guanyl-nucleotide exchange factor activity1.03E-02
95GO:0019825: oxygen binding1.06E-02
96GO:0016491: oxidoreductase activity1.09E-02
97GO:0015198: oligopeptide transporter activity1.13E-02
98GO:0005315: inorganic phosphate transmembrane transporter activity1.24E-02
99GO:0031072: heat shock protein binding1.24E-02
100GO:0000155: phosphorelay sensor kinase activity1.24E-02
101GO:0003725: double-stranded RNA binding1.24E-02
102GO:0008081: phosphoric diester hydrolase activity1.24E-02
103GO:0004565: beta-galactosidase activity1.24E-02
104GO:0010329: auxin efflux transmembrane transporter activity1.24E-02
105GO:0051537: 2 iron, 2 sulfur cluster binding1.29E-02
106GO:0035091: phosphatidylinositol binding1.29E-02
107GO:0003774: motor activity1.35E-02
108GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.35E-02
109GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.39E-02
110GO:0008146: sulfotransferase activity1.46E-02
111GO:0020037: heme binding1.54E-02
112GO:0031409: pigment binding1.58E-02
113GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.61E-02
114GO:0005515: protein binding1.61E-02
115GO:0043130: ubiquitin binding1.70E-02
116GO:0050660: flavin adenine dinucleotide binding1.78E-02
117GO:0003777: microtubule motor activity1.79E-02
118GO:0004176: ATP-dependent peptidase activity1.95E-02
119GO:0052689: carboxylic ester hydrolase activity2.20E-02
120GO:0022891: substrate-specific transmembrane transporter activity2.22E-02
121GO:0030570: pectate lyase activity2.22E-02
122GO:0008514: organic anion transmembrane transporter activity2.35E-02
123GO:0016746: transferase activity, transferring acyl groups2.37E-02
124GO:0016740: transferase activity2.66E-02
125GO:0046872: metal ion binding2.68E-02
126GO:0008080: N-acetyltransferase activity2.78E-02
127GO:0016853: isomerase activity2.92E-02
128GO:0010181: FMN binding2.92E-02
129GO:0030246: carbohydrate binding3.07E-02
130GO:0004252: serine-type endopeptidase activity3.19E-02
131GO:0048038: quinone binding3.23E-02
132GO:0003684: damaged DNA binding3.70E-02
133GO:0016791: phosphatase activity3.70E-02
134GO:0005200: structural constituent of cytoskeleton3.86E-02
135GO:0016597: amino acid binding4.03E-02
136GO:0003743: translation initiation factor activity4.62E-02
137GO:0004721: phosphoprotein phosphatase activity4.71E-02
138GO:0005509: calcium ion binding4.91E-02
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Gene type



Gene DE type