Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G13690

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006429: leucyl-tRNA aminoacylation0.00E+00
2GO:1905421: regulation of plant organ morphogenesis0.00E+00
3GO:0043488: regulation of mRNA stability0.00E+00
4GO:0000455: enzyme-directed rRNA pseudouridine synthesis0.00E+00
5GO:0030155: regulation of cell adhesion0.00E+00
6GO:0046460: neutral lipid biosynthetic process0.00E+00
7GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
8GO:0010422: regulation of brassinosteroid biosynthetic process0.00E+00
9GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
10GO:0090071: negative regulation of ribosome biogenesis0.00E+00
11GO:0031116: positive regulation of microtubule polymerization0.00E+00
12GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
13GO:0007638: mechanosensory behavior0.00E+00
14GO:1905177: tracheary element differentiation0.00E+00
15GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
16GO:0006399: tRNA metabolic process0.00E+00
17GO:0070125: mitochondrial translational elongation0.00E+00
18GO:0009658: chloroplast organization1.67E-09
19GO:0009657: plastid organization4.44E-05
20GO:0032544: plastid translation4.44E-05
21GO:0006415: translational termination1.26E-04
22GO:0009627: systemic acquired resistance3.06E-04
23GO:0006655: phosphatidylglycerol biosynthetic process3.24E-04
24GO:0042793: transcription from plastid promoter3.24E-04
25GO:0042026: protein refolding4.33E-04
26GO:1901259: chloroplast rRNA processing4.33E-04
27GO:0006730: one-carbon metabolic process5.11E-04
28GO:0006747: FAD biosynthetic process5.26E-04
29GO:0006419: alanyl-tRNA aminoacylation5.26E-04
30GO:0000476: maturation of 4.5S rRNA5.26E-04
31GO:0000967: rRNA 5'-end processing5.26E-04
32GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process5.26E-04
33GO:0070509: calcium ion import5.26E-04
34GO:0043266: regulation of potassium ion transport5.26E-04
35GO:0042547: cell wall modification involved in multidimensional cell growth5.26E-04
36GO:0042371: vitamin K biosynthetic process5.26E-04
37GO:2000021: regulation of ion homeostasis5.26E-04
38GO:1902458: positive regulation of stomatal opening5.26E-04
39GO:0048528: post-embryonic root development5.54E-04
40GO:0006353: DNA-templated transcription, termination6.91E-04
41GO:0009231: riboflavin biosynthetic process6.91E-04
42GO:0071482: cellular response to light stimulus8.42E-04
43GO:0009790: embryo development9.12E-04
44GO:0000373: Group II intron splicing1.01E-03
45GO:0015804: neutral amino acid transport1.13E-03
46GO:0034470: ncRNA processing1.13E-03
47GO:0060359: response to ammonium ion1.13E-03
48GO:0034755: iron ion transmembrane transport1.13E-03
49GO:0009220: pyrimidine ribonucleotide biosynthetic process1.13E-03
50GO:1903426: regulation of reactive oxygen species biosynthetic process1.13E-03
51GO:0006352: DNA-templated transcription, initiation1.60E-03
52GO:0010027: thylakoid membrane organization1.78E-03
53GO:0016024: CDP-diacylglycerol biosynthetic process1.83E-03
54GO:0045037: protein import into chloroplast stroma1.83E-03
55GO:0033591: response to L-ascorbic acid1.85E-03
56GO:0048281: inflorescence morphogenesis1.85E-03
57GO:0006954: inflammatory response1.85E-03
58GO:0010623: programmed cell death involved in cell development1.85E-03
59GO:0001578: microtubule bundle formation1.85E-03
60GO:0045493: xylan catabolic process1.85E-03
61GO:0043157: response to cation stress1.85E-03
62GO:2000012: regulation of auxin polar transport2.08E-03
63GO:0090351: seedling development2.63E-03
64GO:0070588: calcium ion transmembrane transport2.63E-03
65GO:0007231: osmosensory signaling pathway2.69E-03
66GO:0051085: chaperone mediated protein folding requiring cofactor2.69E-03
67GO:0051639: actin filament network formation2.69E-03
68GO:0010239: chloroplast mRNA processing2.69E-03
69GO:0019048: modulation by virus of host morphology or physiology2.69E-03
70GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.69E-03
71GO:0031048: chromatin silencing by small RNA2.69E-03
72GO:0010148: transpiration2.69E-03
73GO:2001141: regulation of RNA biosynthetic process2.69E-03
74GO:0016556: mRNA modification2.69E-03
75GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.69E-03
76GO:0051764: actin crosslink formation3.62E-03
77GO:0051322: anaphase3.62E-03
78GO:0033500: carbohydrate homeostasis3.62E-03
79GO:0022622: root system development3.62E-03
80GO:0071483: cellular response to blue light3.62E-03
81GO:0044205: 'de novo' UMP biosynthetic process3.62E-03
82GO:0051567: histone H3-K9 methylation3.62E-03
83GO:0010508: positive regulation of autophagy3.62E-03
84GO:0007020: microtubule nucleation3.62E-03
85GO:0007005: mitochondrion organization4.34E-03
86GO:0009793: embryo development ending in seed dormancy4.59E-03
87GO:0016123: xanthophyll biosynthetic process4.65E-03
88GO:0016131: brassinosteroid metabolic process4.65E-03
89GO:0006465: signal peptide processing4.65E-03
90GO:0046785: microtubule polymerization4.65E-03
91GO:0032543: mitochondrial translation4.65E-03
92GO:0010236: plastoquinone biosynthetic process4.65E-03
93GO:0045038: protein import into chloroplast thylakoid membrane4.65E-03
94GO:0040008: regulation of growth4.91E-03
95GO:0009959: negative gravitropism5.76E-03
96GO:0016554: cytidine to uridine editing5.76E-03
97GO:0016458: gene silencing5.76E-03
98GO:0032973: amino acid export5.76E-03
99GO:0050665: hydrogen peroxide biosynthetic process5.76E-03
100GO:0018258: protein O-linked glycosylation via hydroxyproline5.76E-03
101GO:0009228: thiamine biosynthetic process5.76E-03
102GO:0010405: arabinogalactan protein metabolic process5.76E-03
103GO:0007166: cell surface receptor signaling pathway6.46E-03
104GO:0009955: adaxial/abaxial pattern specification6.95E-03
105GO:0042372: phylloquinone biosynthetic process6.95E-03
106GO:0006458: 'de novo' protein folding6.95E-03
107GO:0017148: negative regulation of translation6.95E-03
108GO:0009942: longitudinal axis specification6.95E-03
109GO:0034389: lipid particle organization6.95E-03
110GO:0009854: oxidative photosynthetic carbon pathway6.95E-03
111GO:0080086: stamen filament development6.95E-03
112GO:0006468: protein phosphorylation7.04E-03
113GO:0009395: phospholipid catabolic process8.23E-03
114GO:0009772: photosynthetic electron transport in photosystem II8.23E-03
115GO:0043090: amino acid import8.23E-03
116GO:0070370: cellular heat acclimation8.23E-03
117GO:0010444: guard mother cell differentiation8.23E-03
118GO:0006400: tRNA modification8.23E-03
119GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process8.23E-03
120GO:0015693: magnesium ion transport8.23E-03
121GO:0010103: stomatal complex morphogenesis8.23E-03
122GO:0032880: regulation of protein localization8.23E-03
123GO:0032502: developmental process8.62E-03
124GO:0006402: mRNA catabolic process9.58E-03
125GO:0048564: photosystem I assembly9.58E-03
126GO:0009787: regulation of abscisic acid-activated signaling pathway9.58E-03
127GO:0009704: de-etiolation9.58E-03
128GO:0042255: ribosome assembly9.58E-03
129GO:2000070: regulation of response to water deprivation9.58E-03
130GO:0046620: regulation of organ growth9.58E-03
131GO:0070413: trehalose metabolism in response to stress9.58E-03
132GO:0000105: histidine biosynthetic process9.58E-03
133GO:0052543: callose deposition in cell wall9.58E-03
134GO:0001558: regulation of cell growth1.10E-02
135GO:0009827: plant-type cell wall modification1.10E-02
136GO:0010204: defense response signaling pathway, resistance gene-independent1.10E-02
137GO:0007389: pattern specification process1.10E-02
138GO:0051607: defense response to virus1.11E-02
139GO:0009821: alkaloid biosynthetic process1.25E-02
140GO:0080144: amino acid homeostasis1.25E-02
141GO:0006098: pentose-phosphate shunt1.25E-02
142GO:0006783: heme biosynthetic process1.25E-02
143GO:0019432: triglyceride biosynthetic process1.25E-02
144GO:0000902: cell morphogenesis1.25E-02
145GO:0010411: xyloglucan metabolic process1.38E-02
146GO:0015995: chlorophyll biosynthetic process1.38E-02
147GO:0042761: very long-chain fatty acid biosynthetic process1.41E-02
148GO:0009638: phototropism1.41E-02
149GO:1900865: chloroplast RNA modification1.41E-02
150GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway1.41E-02
151GO:0031425: chloroplast RNA processing1.41E-02
152GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.50E-02
153GO:0006949: syncytium formation1.57E-02
154GO:0006259: DNA metabolic process1.57E-02
155GO:0006782: protoporphyrinogen IX biosynthetic process1.57E-02
156GO:0030422: production of siRNA involved in RNA interference1.57E-02
157GO:0045036: protein targeting to chloroplast1.57E-02
158GO:0009641: shade avoidance1.57E-02
159GO:0009684: indoleacetic acid biosynthetic process1.74E-02
160GO:0010015: root morphogenesis1.74E-02
161GO:0006265: DNA topological change1.74E-02
162GO:0009089: lysine biosynthetic process via diaminopimelate1.74E-02
163GO:0009073: aromatic amino acid family biosynthetic process1.74E-02
164GO:0006816: calcium ion transport1.74E-02
165GO:0009773: photosynthetic electron transport in photosystem I1.74E-02
166GO:1903507: negative regulation of nucleic acid-templated transcription1.74E-02
167GO:0006879: cellular iron ion homeostasis1.74E-02
168GO:0045087: innate immune response1.95E-02
169GO:0006413: translational initiation1.99E-02
170GO:0009416: response to light stimulus2.07E-02
171GO:0006094: gluconeogenesis2.10E-02
172GO:0010628: positive regulation of gene expression2.10E-02
173GO:0009785: blue light signaling pathway2.10E-02
174GO:0050826: response to freezing2.10E-02
175GO:0006508: proteolysis2.20E-02
176GO:0010207: photosystem II assembly2.29E-02
177GO:0019853: L-ascorbic acid biosynthetic process2.49E-02
178GO:0071732: cellular response to nitric oxide2.49E-02
179GO:0009926: auxin polar transport2.52E-02
180GO:0010025: wax biosynthetic process2.69E-02
181GO:0006071: glycerol metabolic process2.69E-02
182GO:0006833: water transport2.69E-02
183GO:0009965: leaf morphogenesis2.83E-02
184GO:0009116: nucleoside metabolic process2.89E-02
185GO:0009944: polarity specification of adaxial/abaxial axis2.89E-02
186GO:0051017: actin filament bundle assembly2.89E-02
187GO:0030150: protein import into mitochondrial matrix2.89E-02
188GO:0007010: cytoskeleton organization2.89E-02
189GO:0005992: trehalose biosynthetic process2.89E-02
190GO:0006855: drug transmembrane transport2.94E-02
191GO:0051302: regulation of cell division3.10E-02
192GO:0006418: tRNA aminoacylation for protein translation3.10E-02
193GO:0043622: cortical microtubule organization3.10E-02
194GO:0009664: plant-type cell wall organization3.16E-02
195GO:0009733: response to auxin3.30E-02
196GO:0061077: chaperone-mediated protein folding3.32E-02
197GO:0006306: DNA methylation3.32E-02
198GO:0003333: amino acid transmembrane transport3.32E-02
199GO:0048511: rhythmic process3.32E-02
200GO:0006364: rRNA processing3.39E-02
201GO:0051603: proteolysis involved in cellular protein catabolic process3.51E-02
202GO:0009814: defense response, incompatible interaction3.54E-02
203GO:2000022: regulation of jasmonic acid mediated signaling pathway3.54E-02
204GO:0031348: negative regulation of defense response3.54E-02
205GO:0006417: regulation of translation3.75E-02
206GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.77E-02
207GO:0010082: regulation of root meristem growth3.77E-02
208GO:0071369: cellular response to ethylene stimulus3.77E-02
209GO:0001944: vasculature development3.77E-02
210GO:0006012: galactose metabolic process3.77E-02
211GO:0009306: protein secretion4.00E-02
212GO:0010089: xylem development4.00E-02
213GO:0009734: auxin-activated signaling pathway4.19E-02
214GO:0016117: carotenoid biosynthetic process4.23E-02
215GO:0008284: positive regulation of cell proliferation4.23E-02
216GO:0009789: positive regulation of abscisic acid-activated signaling pathway4.23E-02
217GO:0000271: polysaccharide biosynthetic process4.47E-02
218GO:0008033: tRNA processing4.47E-02
219GO:0034220: ion transmembrane transport4.47E-02
220GO:0009409: response to cold4.63E-02
221GO:0009958: positive gravitropism4.72E-02
222GO:0045489: pectin biosynthetic process4.72E-02
223GO:0006662: glycerol ether metabolic process4.72E-02
224GO:0048868: pollen tube development4.72E-02
225GO:0006342: chromatin silencing4.72E-02
226GO:0080167: response to karrikin4.87E-02
227GO:0007059: chromosome segregation4.97E-02
228GO:0009646: response to absence of light4.97E-02
229GO:0048544: recognition of pollen4.97E-02
230GO:0042752: regulation of circadian rhythm4.97E-02
RankGO TermAdjusted P value
1GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
2GO:0043864: indoleacetamide hydrolase activity0.00E+00
3GO:0010349: L-galactose dehydrogenase activity0.00E+00
4GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
5GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
6GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
7GO:0004635: phosphoribosyl-AMP cyclohydrolase activity0.00E+00
8GO:0004823: leucine-tRNA ligase activity0.00E+00
9GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
10GO:0004056: argininosuccinate lyase activity0.00E+00
11GO:0004636: phosphoribosyl-ATP diphosphatase activity0.00E+00
12GO:0015267: channel activity0.00E+00
13GO:0004326: tetrahydrofolylpolyglutamate synthase activity1.21E-05
14GO:0003747: translation release factor activity6.01E-05
15GO:0016149: translation release factor activity, codon specific8.72E-05
16GO:0016851: magnesium chelatase activity8.72E-05
17GO:0016987: sigma factor activity1.51E-04
18GO:0001053: plastid sigma factor activity1.51E-04
19GO:0004040: amidase activity2.30E-04
20GO:0050139: nicotinate-N-glucosyltransferase activity5.26E-04
21GO:0005227: calcium activated cation channel activity5.26E-04
22GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity5.26E-04
23GO:0004813: alanine-tRNA ligase activity5.26E-04
24GO:0008835: diaminohydroxyphosphoribosylaminopyrimidine deaminase activity5.26E-04
25GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity5.26E-04
26GO:0004853: uroporphyrinogen decarboxylase activity5.26E-04
27GO:0010285: L,L-diaminopimelate aminotransferase activity5.26E-04
28GO:0016788: hydrolase activity, acting on ester bonds6.90E-04
29GO:0043022: ribosome binding6.91E-04
30GO:0005525: GTP binding7.61E-04
31GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.08E-03
32GO:0009977: proton motive force dependent protein transmembrane transporter activity1.13E-03
33GO:0003919: FMN adenylyltransferase activity1.13E-03
34GO:0015172: acidic amino acid transmembrane transporter activity1.13E-03
35GO:0010291: carotene beta-ring hydroxylase activity1.13E-03
36GO:0044183: protein binding involved in protein folding1.60E-03
37GO:0070330: aromatase activity1.85E-03
38GO:0002161: aminoacyl-tRNA editing activity1.85E-03
39GO:0004557: alpha-galactosidase activity1.85E-03
40GO:0052692: raffinose alpha-galactosidase activity1.85E-03
41GO:0005262: calcium channel activity2.08E-03
42GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity2.69E-03
43GO:0001872: (1->3)-beta-D-glucan binding2.69E-03
44GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity2.69E-03
45GO:0015175: neutral amino acid transmembrane transporter activity2.69E-03
46GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity2.69E-03
47GO:0016656: monodehydroascorbate reductase (NADH) activity2.69E-03
48GO:0035197: siRNA binding2.69E-03
49GO:0043023: ribosomal large subunit binding2.69E-03
50GO:0019843: rRNA binding3.22E-03
51GO:0003723: RNA binding3.51E-03
52GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds3.62E-03
53GO:0004045: aminoacyl-tRNA hydrolase activity3.62E-03
54GO:0009044: xylan 1,4-beta-xylosidase activity3.62E-03
55GO:0019199: transmembrane receptor protein kinase activity3.62E-03
56GO:0042277: peptide binding3.62E-03
57GO:0008891: glycolate oxidase activity3.62E-03
58GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity3.62E-03
59GO:0046556: alpha-L-arabinofuranosidase activity3.62E-03
60GO:0004659: prenyltransferase activity3.62E-03
61GO:0004176: ATP-dependent peptidase activity3.96E-03
62GO:0018685: alkane 1-monooxygenase activity4.65E-03
63GO:0030570: pectate lyase activity4.73E-03
64GO:0004605: phosphatidate cytidylyltransferase activity5.76E-03
65GO:0080030: methyl indole-3-acetate esterase activity5.76E-03
66GO:1990714: hydroxyproline O-galactosyltransferase activity5.76E-03
67GO:0004332: fructose-bisphosphate aldolase activity5.76E-03
68GO:0042578: phosphoric ester hydrolase activity5.76E-03
69GO:0008195: phosphatidate phosphatase activity6.95E-03
70GO:0003730: mRNA 3'-UTR binding6.95E-03
71GO:0004144: diacylglycerol O-acyltransferase activity6.95E-03
72GO:0004723: calcium-dependent protein serine/threonine phosphatase activity6.95E-03
73GO:0019899: enzyme binding8.23E-03
74GO:0004033: aldo-keto reductase (NADP) activity9.58E-03
75GO:0008237: metallopeptidase activity1.04E-02
76GO:0051082: unfolded protein binding1.08E-02
77GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.10E-02
78GO:0016597: amino acid binding1.11E-02
79GO:0009672: auxin:proton symporter activity1.41E-02
80GO:0005381: iron ion transmembrane transporter activity1.41E-02
81GO:0016844: strictosidine synthase activity1.41E-02
82GO:0005524: ATP binding1.47E-02
83GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity1.53E-02
84GO:0004713: protein tyrosine kinase activity1.57E-02
85GO:0004805: trehalose-phosphatase activity1.57E-02
86GO:0016829: lyase activity1.60E-02
87GO:0015238: drug transmembrane transporter activity1.61E-02
88GO:0004222: metalloendopeptidase activity1.69E-02
89GO:0047372: acylglycerol lipase activity1.74E-02
90GO:0008327: methyl-CpG binding1.74E-02
91GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.78E-02
92GO:0004521: endoribonuclease activity1.92E-02
93GO:0000049: tRNA binding1.92E-02
94GO:0003746: translation elongation factor activity1.95E-02
95GO:0003993: acid phosphatase activity2.04E-02
96GO:0009982: pseudouridine synthase activity2.10E-02
97GO:0004022: alcohol dehydrogenase (NAD) activity2.10E-02
98GO:0004565: beta-galactosidase activity2.10E-02
99GO:0010329: auxin efflux transmembrane transporter activity2.10E-02
100GO:0015266: protein channel activity2.10E-02
101GO:0004089: carbonate dehydratase activity2.10E-02
102GO:0015095: magnesium ion transmembrane transporter activity2.10E-02
103GO:0031072: heat shock protein binding2.10E-02
104GO:0008083: growth factor activity2.29E-02
105GO:0008266: poly(U) RNA binding2.29E-02
106GO:0008017: microtubule binding2.30E-02
107GO:0004185: serine-type carboxypeptidase activity2.52E-02
108GO:0016301: kinase activity2.53E-02
109GO:0003924: GTPase activity2.54E-02
110GO:0003743: translation initiation factor activity2.64E-02
111GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.69E-02
112GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.69E-02
113GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.69E-02
114GO:0043621: protein self-association2.72E-02
115GO:0004519: endonuclease activity2.88E-02
116GO:0003714: transcription corepressor activity2.89E-02
117GO:0015079: potassium ion transmembrane transporter activity3.10E-02
118GO:0005215: transporter activity3.21E-02
119GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds3.29E-02
120GO:0003899: DNA-directed 5'-3' RNA polymerase activity3.39E-02
121GO:0030246: carbohydrate binding3.40E-02
122GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity3.54E-02
123GO:0015171: amino acid transmembrane transporter activity3.75E-02
124GO:0003727: single-stranded RNA binding4.00E-02
125GO:0004812: aminoacyl-tRNA ligase activity4.23E-02
126GO:0047134: protein-disulfide reductase activity4.23E-02
127GO:0008536: Ran GTPase binding4.72E-02
128GO:0004791: thioredoxin-disulfide reductase activity4.97E-02
129GO:0050662: coenzyme binding4.97E-02
130GO:0010181: FMN binding4.97E-02
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Gene type



Gene DE type