GO Enrichment Analysis of Co-expressed Genes with
AT2G12905
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0051924: regulation of calcium ion transport | 0.00E+00 |
| 2 | GO:0042407: cristae formation | 0.00E+00 |
| 3 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 4 | GO:0015882: L-ascorbic acid transport | 0.00E+00 |
| 5 | GO:0018023: peptidyl-lysine trimethylation | 0.00E+00 |
| 6 | GO:0017038: protein import | 0.00E+00 |
| 7 | GO:0031054: pre-miRNA processing | 0.00E+00 |
| 8 | GO:0015805: S-adenosyl-L-methionine transport | 0.00E+00 |
| 9 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 10 | GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process | 0.00E+00 |
| 11 | GO:0097275: cellular ammonia homeostasis | 0.00E+00 |
| 12 | GO:2000505: regulation of energy homeostasis | 0.00E+00 |
| 13 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 14 | GO:0006021: inositol biosynthetic process | 1.23E-07 |
| 15 | GO:0009658: chloroplast organization | 1.79E-05 |
| 16 | GO:0046855: inositol phosphate dephosphorylation | 6.24E-05 |
| 17 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 6.24E-05 |
| 18 | GO:2000070: regulation of response to water deprivation | 1.48E-04 |
| 19 | GO:0032544: plastid translation | 1.85E-04 |
| 20 | GO:0009443: pyridoxal 5'-phosphate salvage | 1.86E-04 |
| 21 | GO:0031426: polycistronic mRNA processing | 1.86E-04 |
| 22 | GO:0043266: regulation of potassium ion transport | 1.86E-04 |
| 23 | GO:0000481: maturation of 5S rRNA | 1.86E-04 |
| 24 | GO:0006659: phosphatidylserine biosynthetic process | 1.86E-04 |
| 25 | GO:0043686: co-translational protein modification | 1.86E-04 |
| 26 | GO:0043087: regulation of GTPase activity | 1.86E-04 |
| 27 | GO:2000021: regulation of ion homeostasis | 1.86E-04 |
| 28 | GO:1902458: positive regulation of stomatal opening | 1.86E-04 |
| 29 | GO:0010028: xanthophyll cycle | 1.86E-04 |
| 30 | GO:0034337: RNA folding | 1.86E-04 |
| 31 | GO:0006782: protoporphyrinogen IX biosynthetic process | 3.16E-04 |
| 32 | GO:0015995: chlorophyll biosynthetic process | 3.22E-04 |
| 33 | GO:0018119: peptidyl-cysteine S-nitrosylation | 3.66E-04 |
| 34 | GO:0006423: cysteinyl-tRNA aminoacylation | 4.19E-04 |
| 35 | GO:0006435: threonyl-tRNA aminoacylation | 4.19E-04 |
| 36 | GO:0018026: peptidyl-lysine monomethylation | 4.19E-04 |
| 37 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 4.19E-04 |
| 38 | GO:0006568: tryptophan metabolic process | 4.19E-04 |
| 39 | GO:0006790: sulfur compound metabolic process | 4.20E-04 |
| 40 | GO:0046854: phosphatidylinositol phosphorylation | 6.03E-04 |
| 41 | GO:0010589: leaf proximal/distal pattern formation | 6.84E-04 |
| 42 | GO:0080055: low-affinity nitrate transport | 6.84E-04 |
| 43 | GO:0051604: protein maturation | 6.84E-04 |
| 44 | GO:0000913: preprophase band assembly | 6.84E-04 |
| 45 | GO:0033591: response to L-ascorbic acid | 6.84E-04 |
| 46 | GO:0031022: nuclear migration along microfilament | 6.84E-04 |
| 47 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 9.77E-04 |
| 48 | GO:0006020: inositol metabolic process | 9.77E-04 |
| 49 | GO:0009102: biotin biosynthetic process | 9.77E-04 |
| 50 | GO:1901000: regulation of response to salt stress | 9.77E-04 |
| 51 | GO:0010239: chloroplast mRNA processing | 9.77E-04 |
| 52 | GO:0035279: mRNA cleavage involved in gene silencing by miRNA | 1.29E-03 |
| 53 | GO:0010109: regulation of photosynthesis | 1.29E-03 |
| 54 | GO:0009791: post-embryonic development | 1.65E-03 |
| 55 | GO:0009904: chloroplast accumulation movement | 1.65E-03 |
| 56 | GO:0010236: plastoquinone biosynthetic process | 1.65E-03 |
| 57 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.65E-03 |
| 58 | GO:0031365: N-terminal protein amino acid modification | 1.65E-03 |
| 59 | GO:0016032: viral process | 1.89E-03 |
| 60 | GO:1901657: glycosyl compound metabolic process | 2.01E-03 |
| 61 | GO:0016554: cytidine to uridine editing | 2.03E-03 |
| 62 | GO:0045962: positive regulation of development, heterochronic | 2.03E-03 |
| 63 | GO:0009920: cell plate formation involved in plant-type cell wall biogenesis | 2.03E-03 |
| 64 | GO:0010190: cytochrome b6f complex assembly | 2.03E-03 |
| 65 | GO:0010264: myo-inositol hexakisphosphate biosynthetic process | 2.03E-03 |
| 66 | GO:0009903: chloroplast avoidance movement | 2.43E-03 |
| 67 | GO:0030488: tRNA methylation | 2.43E-03 |
| 68 | GO:0010027: thylakoid membrane organization | 2.54E-03 |
| 69 | GO:0035196: production of miRNAs involved in gene silencing by miRNA | 2.87E-03 |
| 70 | GO:0006605: protein targeting | 3.32E-03 |
| 71 | GO:0032508: DNA duplex unwinding | 3.32E-03 |
| 72 | GO:0016559: peroxisome fission | 3.32E-03 |
| 73 | GO:0048507: meristem development | 4.30E-03 |
| 74 | GO:0010206: photosystem II repair | 4.30E-03 |
| 75 | GO:0006783: heme biosynthetic process | 4.30E-03 |
| 76 | GO:0098656: anion transmembrane transport | 4.30E-03 |
| 77 | GO:1900865: chloroplast RNA modification | 4.82E-03 |
| 78 | GO:0010267: production of ta-siRNAs involved in RNA interference | 4.82E-03 |
| 79 | GO:0043067: regulation of programmed cell death | 4.82E-03 |
| 80 | GO:0006779: porphyrin-containing compound biosynthetic process | 4.82E-03 |
| 81 | GO:0006535: cysteine biosynthetic process from serine | 5.36E-03 |
| 82 | GO:0045036: protein targeting to chloroplast | 5.36E-03 |
| 83 | GO:0006415: translational termination | 5.92E-03 |
| 84 | GO:1903507: negative regulation of nucleic acid-templated transcription | 5.92E-03 |
| 85 | GO:0045037: protein import into chloroplast stroma | 6.51E-03 |
| 86 | GO:0030048: actin filament-based movement | 7.11E-03 |
| 87 | GO:0006108: malate metabolic process | 7.11E-03 |
| 88 | GO:0006006: glucose metabolic process | 7.11E-03 |
| 89 | GO:0030036: actin cytoskeleton organization | 7.11E-03 |
| 90 | GO:0010020: chloroplast fission | 7.73E-03 |
| 91 | GO:0019253: reductive pentose-phosphate cycle | 7.73E-03 |
| 92 | GO:0010207: photosystem II assembly | 7.73E-03 |
| 93 | GO:0009409: response to cold | 8.27E-03 |
| 94 | GO:0015979: photosynthesis | 8.37E-03 |
| 95 | GO:0019853: L-ascorbic acid biosynthetic process | 8.37E-03 |
| 96 | GO:0080147: root hair cell development | 9.71E-03 |
| 97 | GO:0006289: nucleotide-excision repair | 9.71E-03 |
| 98 | GO:0019344: cysteine biosynthetic process | 9.71E-03 |
| 99 | GO:0005975: carbohydrate metabolic process | 1.01E-02 |
| 100 | GO:0008299: isoprenoid biosynthetic process | 1.04E-02 |
| 101 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.04E-02 |
| 102 | GO:0010073: meristem maintenance | 1.04E-02 |
| 103 | GO:0016114: terpenoid biosynthetic process | 1.11E-02 |
| 104 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 1.19E-02 |
| 105 | GO:0009306: protein secretion | 1.34E-02 |
| 106 | GO:0051028: mRNA transport | 1.42E-02 |
| 107 | GO:0010305: leaf vascular tissue pattern formation | 1.58E-02 |
| 108 | GO:0010197: polar nucleus fusion | 1.58E-02 |
| 109 | GO:0007018: microtubule-based movement | 1.66E-02 |
| 110 | GO:0009646: response to absence of light | 1.66E-02 |
| 111 | GO:0008654: phospholipid biosynthetic process | 1.75E-02 |
| 112 | GO:0007623: circadian rhythm | 1.79E-02 |
| 113 | GO:0010583: response to cyclopentenone | 1.92E-02 |
| 114 | GO:0030163: protein catabolic process | 2.01E-02 |
| 115 | GO:0010090: trichome morphogenesis | 2.01E-02 |
| 116 | GO:0008380: RNA splicing | 2.14E-02 |
| 117 | GO:0000910: cytokinesis | 2.29E-02 |
| 118 | GO:0016126: sterol biosynthetic process | 2.38E-02 |
| 119 | GO:0009416: response to light stimulus | 2.40E-02 |
| 120 | GO:0009627: systemic acquired resistance | 2.58E-02 |
| 121 | GO:0009817: defense response to fungus, incompatible interaction | 2.88E-02 |
| 122 | GO:0018298: protein-chromophore linkage | 2.88E-02 |
| 123 | GO:0009813: flavonoid biosynthetic process | 2.98E-02 |
| 124 | GO:0006499: N-terminal protein myristoylation | 3.08E-02 |
| 125 | GO:0055114: oxidation-reduction process | 3.25E-02 |
| 126 | GO:0006099: tricarboxylic acid cycle | 3.51E-02 |
| 127 | GO:0046777: protein autophosphorylation | 3.68E-02 |
| 128 | GO:0006839: mitochondrial transport | 3.74E-02 |
| 129 | GO:0006631: fatty acid metabolic process | 3.85E-02 |
| 130 | GO:0009744: response to sucrose | 4.08E-02 |
| 131 | GO:0006886: intracellular protein transport | 4.24E-02 |
| 132 | GO:0009965: leaf morphogenesis | 4.43E-02 |
| 133 | GO:0031347: regulation of defense response | 4.67E-02 |
| 134 | GO:0042538: hyperosmotic salinity response | 4.79E-02 |
| 135 | GO:0016042: lipid catabolic process | 4.91E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 2 | GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity | 0.00E+00 |
| 3 | GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity | 0.00E+00 |
| 4 | GO:0050613: delta14-sterol reductase activity | 0.00E+00 |
| 5 | GO:0015229: L-ascorbic acid transporter activity | 0.00E+00 |
| 6 | GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity | 0.00E+00 |
| 7 | GO:0004076: biotin synthase activity | 0.00E+00 |
| 8 | GO:0008934: inositol monophosphate 1-phosphatase activity | 1.66E-06 |
| 9 | GO:0052833: inositol monophosphate 4-phosphatase activity | 1.66E-06 |
| 10 | GO:0052832: inositol monophosphate 3-phosphatase activity | 1.66E-06 |
| 11 | GO:0070402: NADPH binding | 6.12E-06 |
| 12 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 8.69E-05 |
| 13 | GO:0004017: adenylate kinase activity | 8.69E-05 |
| 14 | GO:0004853: uroporphyrinogen decarboxylase activity | 1.86E-04 |
| 15 | GO:0042586: peptide deformylase activity | 1.86E-04 |
| 16 | GO:0004856: xylulokinase activity | 1.86E-04 |
| 17 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 1.86E-04 |
| 18 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 1.86E-04 |
| 19 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 1.86E-04 |
| 20 | GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity | 1.86E-04 |
| 21 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 1.86E-04 |
| 22 | GO:0004512: inositol-3-phosphate synthase activity | 4.19E-04 |
| 23 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 4.19E-04 |
| 24 | GO:0016630: protochlorophyllide reductase activity | 4.19E-04 |
| 25 | GO:0004829: threonine-tRNA ligase activity | 4.19E-04 |
| 26 | GO:0050017: L-3-cyanoalanine synthase activity | 4.19E-04 |
| 27 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 4.19E-04 |
| 28 | GO:0004817: cysteine-tRNA ligase activity | 4.19E-04 |
| 29 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 4.19E-04 |
| 30 | GO:0003913: DNA photolyase activity | 6.84E-04 |
| 31 | GO:0005504: fatty acid binding | 6.84E-04 |
| 32 | GO:0004751: ribose-5-phosphate isomerase activity | 6.84E-04 |
| 33 | GO:0080054: low-affinity nitrate transmembrane transporter activity | 6.84E-04 |
| 34 | GO:0015462: ATPase-coupled protein transmembrane transporter activity | 6.84E-04 |
| 35 | GO:0005528: FK506 binding | 7.41E-04 |
| 36 | GO:0019201: nucleotide kinase activity | 9.77E-04 |
| 37 | GO:0048027: mRNA 5'-UTR binding | 9.77E-04 |
| 38 | GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | 9.77E-04 |
| 39 | GO:0016851: magnesium chelatase activity | 9.77E-04 |
| 40 | GO:0016149: translation release factor activity, codon specific | 9.77E-04 |
| 41 | GO:0043023: ribosomal large subunit binding | 9.77E-04 |
| 42 | GO:0035198: miRNA binding | 9.77E-04 |
| 43 | GO:0070628: proteasome binding | 1.29E-03 |
| 44 | GO:0045430: chalcone isomerase activity | 1.29E-03 |
| 45 | GO:0016279: protein-lysine N-methyltransferase activity | 1.29E-03 |
| 46 | GO:0004045: aminoacyl-tRNA hydrolase activity | 1.29E-03 |
| 47 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.65E-03 |
| 48 | GO:0003959: NADPH dehydrogenase activity | 1.65E-03 |
| 49 | GO:0031593: polyubiquitin binding | 2.03E-03 |
| 50 | GO:0016491: oxidoreductase activity | 2.27E-03 |
| 51 | GO:0016832: aldehyde-lyase activity | 2.43E-03 |
| 52 | GO:0030060: L-malate dehydrogenase activity | 2.43E-03 |
| 53 | GO:0009927: histidine phosphotransfer kinase activity | 2.43E-03 |
| 54 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 2.43E-03 |
| 55 | GO:0004124: cysteine synthase activity | 2.43E-03 |
| 56 | GO:0009881: photoreceptor activity | 2.87E-03 |
| 57 | GO:0102483: scopolin beta-glucosidase activity | 2.99E-03 |
| 58 | GO:0008236: serine-type peptidase activity | 3.15E-03 |
| 59 | GO:0004033: aldo-keto reductase (NADP) activity | 3.32E-03 |
| 60 | GO:0043022: ribosome binding | 3.32E-03 |
| 61 | GO:0008173: RNA methyltransferase activity | 3.80E-03 |
| 62 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 3.82E-03 |
| 63 | GO:0003747: translation release factor activity | 4.30E-03 |
| 64 | GO:0008422: beta-glucosidase activity | 4.57E-03 |
| 65 | GO:0047372: acylglycerol lipase activity | 5.92E-03 |
| 66 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 6.28E-03 |
| 67 | GO:0003725: double-stranded RNA binding | 7.11E-03 |
| 68 | GO:0005315: inorganic phosphate transmembrane transporter activity | 7.11E-03 |
| 69 | GO:0031072: heat shock protein binding | 7.11E-03 |
| 70 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 7.73E-03 |
| 71 | GO:0003774: motor activity | 7.73E-03 |
| 72 | GO:0031409: pigment binding | 9.03E-03 |
| 73 | GO:0003714: transcription corepressor activity | 9.71E-03 |
| 74 | GO:0043130: ubiquitin binding | 9.71E-03 |
| 75 | GO:0051087: chaperone binding | 1.04E-02 |
| 76 | GO:0005525: GTP binding | 1.27E-02 |
| 77 | GO:0008514: organic anion transmembrane transporter activity | 1.34E-02 |
| 78 | GO:0030170: pyridoxal phosphate binding | 1.44E-02 |
| 79 | GO:0008080: N-acetyltransferase activity | 1.58E-02 |
| 80 | GO:0016853: isomerase activity | 1.66E-02 |
| 81 | GO:0008017: microtubule binding | 1.88E-02 |
| 82 | GO:0003684: damaged DNA binding | 2.10E-02 |
| 83 | GO:0008483: transaminase activity | 2.19E-02 |
| 84 | GO:0005200: structural constituent of cytoskeleton | 2.19E-02 |
| 85 | GO:0042802: identical protein binding | 2.28E-02 |
| 86 | GO:0016168: chlorophyll binding | 2.48E-02 |
| 87 | GO:0016788: hydrolase activity, acting on ester bonds | 2.83E-02 |
| 88 | GO:0005096: GTPase activator activity | 2.98E-02 |
| 89 | GO:0030145: manganese ion binding | 3.19E-02 |
| 90 | GO:0050660: flavin adenine dinucleotide binding | 3.22E-02 |
| 91 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 3.39E-02 |
| 92 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 3.40E-02 |
| 93 | GO:0003746: translation elongation factor activity | 3.40E-02 |
| 94 | GO:0003993: acid phosphatase activity | 3.51E-02 |
| 95 | GO:0005507: copper ion binding | 3.72E-02 |
| 96 | GO:0051539: 4 iron, 4 sulfur cluster binding | 3.74E-02 |
| 97 | GO:0052689: carboxylic ester hydrolase activity | 3.80E-02 |
| 98 | GO:0005515: protein binding | 4.04E-02 |
| 99 | GO:0035091: phosphatidylinositol binding | 4.31E-02 |
| 100 | GO:0042803: protein homodimerization activity | 4.31E-02 |
| 101 | GO:0051537: 2 iron, 2 sulfur cluster binding | 4.31E-02 |
| 102 | GO:0005198: structural molecule activity | 4.43E-02 |