GO Enrichment Analysis of Co-expressed Genes with
AT2G12462
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009606: tropism | 0.00E+00 |
| 2 | GO:0000372: Group I intron splicing | 0.00E+00 |
| 3 | GO:0043972: histone H3-K23 acetylation | 0.00E+00 |
| 4 | GO:0042794: rRNA transcription from plastid promoter | 0.00E+00 |
| 5 | GO:0044154: histone H3-K14 acetylation | 0.00E+00 |
| 6 | GO:1901698: response to nitrogen compound | 0.00E+00 |
| 7 | GO:2000038: regulation of stomatal complex development | 5.79E-06 |
| 8 | GO:0043971: histone H3-K18 acetylation | 7.75E-05 |
| 9 | GO:0061014: positive regulation of mRNA catabolic process | 7.75E-05 |
| 10 | GO:1900033: negative regulation of trichome patterning | 1.85E-04 |
| 11 | GO:2000123: positive regulation of stomatal complex development | 1.85E-04 |
| 12 | GO:0030029: actin filament-based process | 3.11E-04 |
| 13 | GO:0071705: nitrogen compound transport | 3.11E-04 |
| 14 | GO:0009800: cinnamic acid biosynthetic process | 4.49E-04 |
| 15 | GO:1902290: positive regulation of defense response to oomycetes | 4.49E-04 |
| 16 | GO:0048629: trichome patterning | 5.98E-04 |
| 17 | GO:1900864: mitochondrial RNA modification | 5.98E-04 |
| 18 | GO:0071249: cellular response to nitrate | 5.98E-04 |
| 19 | GO:0032876: negative regulation of DNA endoreduplication | 7.57E-04 |
| 20 | GO:0030308: negative regulation of cell growth | 7.57E-04 |
| 21 | GO:0010375: stomatal complex patterning | 7.57E-04 |
| 22 | GO:0042793: transcription from plastid promoter | 9.24E-04 |
| 23 | GO:0010315: auxin efflux | 9.24E-04 |
| 24 | GO:0006559: L-phenylalanine catabolic process | 9.24E-04 |
| 25 | GO:2000037: regulation of stomatal complex patterning | 1.10E-03 |
| 26 | GO:0010067: procambium histogenesis | 1.10E-03 |
| 27 | GO:0070370: cellular heat acclimation | 1.29E-03 |
| 28 | GO:0010103: stomatal complex morphogenesis | 1.29E-03 |
| 29 | GO:0030001: metal ion transport | 1.46E-03 |
| 30 | GO:0006402: mRNA catabolic process | 1.48E-03 |
| 31 | GO:0042255: ribosome assembly | 1.48E-03 |
| 32 | GO:0006353: DNA-templated transcription, termination | 1.48E-03 |
| 33 | GO:0048766: root hair initiation | 1.48E-03 |
| 34 | GO:0007389: pattern specification process | 1.69E-03 |
| 35 | GO:0044030: regulation of DNA methylation | 1.69E-03 |
| 36 | GO:0009880: embryonic pattern specification | 1.69E-03 |
| 37 | GO:0000373: Group II intron splicing | 1.91E-03 |
| 38 | GO:0009245: lipid A biosynthetic process | 1.91E-03 |
| 39 | GO:0016571: histone methylation | 2.14E-03 |
| 40 | GO:0016573: histone acetylation | 2.14E-03 |
| 41 | GO:1900426: positive regulation of defense response to bacterium | 2.14E-03 |
| 42 | GO:0031425: chloroplast RNA processing | 2.14E-03 |
| 43 | GO:0048829: root cap development | 2.37E-03 |
| 44 | GO:0031627: telomeric loop formation | 2.37E-03 |
| 45 | GO:0046856: phosphatidylinositol dephosphorylation | 2.61E-03 |
| 46 | GO:0006397: mRNA processing | 2.65E-03 |
| 47 | GO:0015706: nitrate transport | 2.86E-03 |
| 48 | GO:0008361: regulation of cell size | 2.86E-03 |
| 49 | GO:0010588: cotyledon vascular tissue pattern formation | 3.12E-03 |
| 50 | GO:0010102: lateral root morphogenesis | 3.12E-03 |
| 51 | GO:0010223: secondary shoot formation | 3.38E-03 |
| 52 | GO:0009266: response to temperature stimulus | 3.38E-03 |
| 53 | GO:0010020: chloroplast fission | 3.38E-03 |
| 54 | GO:0080188: RNA-directed DNA methylation | 3.66E-03 |
| 55 | GO:0010167: response to nitrate | 3.66E-03 |
| 56 | GO:0009734: auxin-activated signaling pathway | 3.88E-03 |
| 57 | GO:0080147: root hair cell development | 4.23E-03 |
| 58 | GO:2000377: regulation of reactive oxygen species metabolic process | 4.23E-03 |
| 59 | GO:0006338: chromatin remodeling | 4.23E-03 |
| 60 | GO:0006825: copper ion transport | 4.52E-03 |
| 61 | GO:0003333: amino acid transmembrane transport | 4.82E-03 |
| 62 | GO:0016226: iron-sulfur cluster assembly | 5.13E-03 |
| 63 | GO:0009416: response to light stimulus | 5.19E-03 |
| 64 | GO:0010082: regulation of root meristem growth | 5.45E-03 |
| 65 | GO:0001944: vasculature development | 5.45E-03 |
| 66 | GO:0010089: xylem development | 5.77E-03 |
| 67 | GO:0006284: base-excision repair | 5.77E-03 |
| 68 | GO:0010051: xylem and phloem pattern formation | 6.44E-03 |
| 69 | GO:0042631: cellular response to water deprivation | 6.44E-03 |
| 70 | GO:0006468: protein phosphorylation | 6.67E-03 |
| 71 | GO:0009958: positive gravitropism | 6.78E-03 |
| 72 | GO:0046323: glucose import | 6.78E-03 |
| 73 | GO:0071472: cellular response to salt stress | 6.78E-03 |
| 74 | GO:0010305: leaf vascular tissue pattern formation | 6.78E-03 |
| 75 | GO:0007018: microtubule-based movement | 7.13E-03 |
| 76 | GO:0080156: mitochondrial mRNA modification | 7.85E-03 |
| 77 | GO:0002229: defense response to oomycetes | 7.85E-03 |
| 78 | GO:0006355: regulation of transcription, DNA-templated | 7.91E-03 |
| 79 | GO:0032502: developmental process | 8.22E-03 |
| 80 | GO:0009630: gravitropism | 8.22E-03 |
| 81 | GO:0009658: chloroplast organization | 8.30E-03 |
| 82 | GO:0010090: trichome morphogenesis | 8.59E-03 |
| 83 | GO:0006970: response to osmotic stress | 8.94E-03 |
| 84 | GO:0010252: auxin homeostasis | 8.97E-03 |
| 85 | GO:0007267: cell-cell signaling | 9.36E-03 |
| 86 | GO:0010286: heat acclimation | 9.36E-03 |
| 87 | GO:0010027: thylakoid membrane organization | 1.02E-02 |
| 88 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 1.07E-02 |
| 89 | GO:0048481: plant ovule development | 1.22E-02 |
| 90 | GO:0045892: negative regulation of transcription, DNA-templated | 1.25E-02 |
| 91 | GO:0048767: root hair elongation | 1.27E-02 |
| 92 | GO:0009910: negative regulation of flower development | 1.36E-02 |
| 93 | GO:0000724: double-strand break repair via homologous recombination | 1.40E-02 |
| 94 | GO:0006865: amino acid transport | 1.40E-02 |
| 95 | GO:0016042: lipid catabolic process | 1.48E-02 |
| 96 | GO:0048364: root development | 1.59E-02 |
| 97 | GO:0008283: cell proliferation | 1.73E-02 |
| 98 | GO:0009926: auxin polar transport | 1.73E-02 |
| 99 | GO:0031347: regulation of defense response | 1.98E-02 |
| 100 | GO:0006857: oligopeptide transport | 2.25E-02 |
| 101 | GO:0006096: glycolytic process | 2.41E-02 |
| 102 | GO:0016569: covalent chromatin modification | 2.64E-02 |
| 103 | GO:0009553: embryo sac development | 2.69E-02 |
| 104 | GO:0009624: response to nematode | 2.75E-02 |
| 105 | GO:0009058: biosynthetic process | 3.35E-02 |
| 106 | GO:0009845: seed germination | 3.42E-02 |
| 107 | GO:0009790: embryo development | 3.61E-02 |
| 108 | GO:0009793: embryo development ending in seed dormancy | 3.64E-02 |
| 109 | GO:0006633: fatty acid biosynthetic process | 3.80E-02 |
| 110 | GO:0010150: leaf senescence | 4.06E-02 |
| 111 | GO:0009451: RNA modification | 4.13E-02 |
| 112 | GO:0007166: cell surface receptor signaling pathway | 4.47E-02 |
| 113 | GO:0008380: RNA splicing | 4.60E-02 |
| 114 | GO:0009617: response to bacterium | 4.60E-02 |
| 115 | GO:0010468: regulation of gene expression | 4.60E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004016: adenylate cyclase activity | 7.75E-05 |
| 2 | GO:0008805: carbon-monoxide oxygenase activity | 1.85E-04 |
| 3 | GO:0004674: protein serine/threonine kinase activity | 2.00E-04 |
| 4 | GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity | 3.11E-04 |
| 5 | GO:0045548: phenylalanine ammonia-lyase activity | 3.11E-04 |
| 6 | GO:0005354: galactose transmembrane transporter activity | 4.49E-04 |
| 7 | GO:0010385: double-stranded methylated DNA binding | 5.98E-04 |
| 8 | GO:0008725: DNA-3-methyladenine glycosylase activity | 7.57E-04 |
| 9 | GO:0031177: phosphopantetheine binding | 9.24E-04 |
| 10 | GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity | 9.24E-04 |
| 11 | GO:0009378: four-way junction helicase activity | 9.24E-04 |
| 12 | GO:0043140: ATP-dependent 3'-5' DNA helicase activity | 9.24E-04 |
| 13 | GO:0000035: acyl binding | 1.10E-03 |
| 14 | GO:0016832: aldehyde-lyase activity | 1.10E-03 |
| 15 | GO:0003697: single-stranded DNA binding | 1.29E-03 |
| 16 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 1.48E-03 |
| 17 | GO:0009672: auxin:proton symporter activity | 2.14E-03 |
| 18 | GO:0003690: double-stranded DNA binding | 2.28E-03 |
| 19 | GO:0004713: protein tyrosine kinase activity | 2.37E-03 |
| 20 | GO:0003691: double-stranded telomeric DNA binding | 2.61E-03 |
| 21 | GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity | 2.86E-03 |
| 22 | GO:0010329: auxin efflux transmembrane transporter activity | 3.12E-03 |
| 23 | GO:0005215: transporter activity | 3.22E-03 |
| 24 | GO:0003727: single-stranded RNA binding | 5.77E-03 |
| 25 | GO:0004402: histone acetyltransferase activity | 6.44E-03 |
| 26 | GO:0003723: RNA binding | 6.79E-03 |
| 27 | GO:0005355: glucose transmembrane transporter activity | 7.13E-03 |
| 28 | GO:0019901: protein kinase binding | 7.49E-03 |
| 29 | GO:0003677: DNA binding | 7.89E-03 |
| 30 | GO:0016788: hydrolase activity, acting on ester bonds | 8.46E-03 |
| 31 | GO:0005200: structural constituent of cytoskeleton | 9.36E-03 |
| 32 | GO:0052689: carboxylic ester hydrolase activity | 1.14E-02 |
| 33 | GO:0004871: signal transducer activity | 1.29E-02 |
| 34 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 1.36E-02 |
| 35 | GO:0042393: histone binding | 1.59E-02 |
| 36 | GO:0004519: endonuclease activity | 1.66E-02 |
| 37 | GO:0015293: symporter activity | 1.88E-02 |
| 38 | GO:0003777: microtubule motor activity | 2.30E-02 |
| 39 | GO:0015171: amino acid transmembrane transporter activity | 2.30E-02 |
| 40 | GO:0004650: polygalacturonase activity | 2.58E-02 |
| 41 | GO:0016874: ligase activity | 2.64E-02 |
| 42 | GO:0019843: rRNA binding | 3.23E-02 |
| 43 | GO:0016829: lyase activity | 3.42E-02 |
| 44 | GO:0015144: carbohydrate transmembrane transporter activity | 3.67E-02 |
| 45 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 3.86E-02 |
| 46 | GO:0005351: sugar:proton symporter activity | 3.99E-02 |
| 47 | GO:0005516: calmodulin binding | 4.07E-02 |