GO Enrichment Analysis of Co-expressed Genes with
AT2G05920
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0015843: methylammonium transport | 0.00E+00 |
| 2 | GO:0061157: mRNA destabilization | 0.00E+00 |
| 3 | GO:0018131: oxazole or thiazole biosynthetic process | 0.00E+00 |
| 4 | GO:0009157: deoxyribonucleoside monophosphate biosynthetic process | 0.00E+00 |
| 5 | GO:0007638: mechanosensory behavior | 0.00E+00 |
| 6 | GO:0007172: signal complex assembly | 0.00E+00 |
| 7 | GO:0010068: protoderm histogenesis | 0.00E+00 |
| 8 | GO:0010480: microsporocyte differentiation | 0.00E+00 |
| 9 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 9.62E-11 |
| 10 | GO:0032502: developmental process | 1.33E-05 |
| 11 | GO:0006468: protein phosphorylation | 1.43E-05 |
| 12 | GO:0009934: regulation of meristem structural organization | 3.39E-05 |
| 13 | GO:0048437: floral organ development | 1.52E-04 |
| 14 | GO:0042255: ribosome assembly | 1.94E-04 |
| 15 | GO:0033259: plastid DNA replication | 2.22E-04 |
| 16 | GO:0034970: histone H3-R2 methylation | 2.22E-04 |
| 17 | GO:0034972: histone H3-R26 methylation | 2.22E-04 |
| 18 | GO:0034971: histone H3-R17 methylation | 2.22E-04 |
| 19 | GO:0006264: mitochondrial DNA replication | 2.22E-04 |
| 20 | GO:0000373: Group II intron splicing | 2.91E-04 |
| 21 | GO:0048229: gametophyte development | 4.69E-04 |
| 22 | GO:0071258: cellular response to gravity | 4.95E-04 |
| 23 | GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine | 4.95E-04 |
| 24 | GO:0010254: nectary development | 4.95E-04 |
| 25 | GO:0010569: regulation of double-strand break repair via homologous recombination | 4.95E-04 |
| 26 | GO:0010434: bract formation | 4.95E-04 |
| 27 | GO:0048439: flower morphogenesis | 4.95E-04 |
| 28 | GO:0009786: regulation of asymmetric cell division | 4.95E-04 |
| 29 | GO:0010582: floral meristem determinacy | 5.37E-04 |
| 30 | GO:0010075: regulation of meristem growth | 6.09E-04 |
| 31 | GO:0030154: cell differentiation | 7.39E-04 |
| 32 | GO:0016050: vesicle organization | 8.05E-04 |
| 33 | GO:0009954: proximal/distal pattern formation | 8.05E-04 |
| 34 | GO:0051127: positive regulation of actin nucleation | 8.05E-04 |
| 35 | GO:0051604: protein maturation | 8.05E-04 |
| 36 | GO:0005992: trehalose biosynthetic process | 9.41E-04 |
| 37 | GO:0009944: polarity specification of adaxial/abaxial axis | 9.41E-04 |
| 38 | GO:0006306: DNA methylation | 1.13E-03 |
| 39 | GO:1902476: chloride transmembrane transport | 1.15E-03 |
| 40 | GO:0051513: regulation of monopolar cell growth | 1.15E-03 |
| 41 | GO:0007231: osmosensory signaling pathway | 1.15E-03 |
| 42 | GO:0051639: actin filament network formation | 1.15E-03 |
| 43 | GO:0044211: CTP salvage | 1.15E-03 |
| 44 | GO:0019048: modulation by virus of host morphology or physiology | 1.15E-03 |
| 45 | GO:0031048: chromatin silencing by small RNA | 1.15E-03 |
| 46 | GO:0048645: animal organ formation | 1.15E-03 |
| 47 | GO:0015696: ammonium transport | 1.15E-03 |
| 48 | GO:0046739: transport of virus in multicellular host | 1.15E-03 |
| 49 | GO:2000904: regulation of starch metabolic process | 1.15E-03 |
| 50 | GO:0009658: chloroplast organization | 1.46E-03 |
| 51 | GO:0051764: actin crosslink formation | 1.53E-03 |
| 52 | GO:0072488: ammonium transmembrane transport | 1.53E-03 |
| 53 | GO:0022622: root system development | 1.53E-03 |
| 54 | GO:0051567: histone H3-K9 methylation | 1.53E-03 |
| 55 | GO:0033500: carbohydrate homeostasis | 1.53E-03 |
| 56 | GO:0044206: UMP salvage | 1.53E-03 |
| 57 | GO:0044205: 'de novo' UMP biosynthetic process | 1.53E-03 |
| 58 | GO:0009165: nucleotide biosynthetic process | 1.53E-03 |
| 59 | GO:0048653: anther development | 1.71E-03 |
| 60 | GO:0006342: chromatin silencing | 1.84E-03 |
| 61 | GO:0009958: positive gravitropism | 1.84E-03 |
| 62 | GO:1902183: regulation of shoot apical meristem development | 1.95E-03 |
| 63 | GO:0010158: abaxial cell fate specification | 1.95E-03 |
| 64 | GO:0048578: positive regulation of long-day photoperiodism, flowering | 1.95E-03 |
| 65 | GO:0006544: glycine metabolic process | 1.95E-03 |
| 66 | GO:0010405: arabinogalactan protein metabolic process | 2.40E-03 |
| 67 | GO:0009959: negative gravitropism | 2.40E-03 |
| 68 | GO:0006206: pyrimidine nucleobase metabolic process | 2.40E-03 |
| 69 | GO:0006655: phosphatidylglycerol biosynthetic process | 2.40E-03 |
| 70 | GO:0006139: nucleobase-containing compound metabolic process | 2.40E-03 |
| 71 | GO:0018258: protein O-linked glycosylation via hydroxyproline | 2.40E-03 |
| 72 | GO:0009228: thiamine biosynthetic process | 2.40E-03 |
| 73 | GO:0016458: gene silencing | 2.40E-03 |
| 74 | GO:0006563: L-serine metabolic process | 2.40E-03 |
| 75 | GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity | 2.89E-03 |
| 76 | GO:0030488: tRNA methylation | 2.89E-03 |
| 77 | GO:0051607: defense response to virus | 3.08E-03 |
| 78 | GO:0032880: regulation of protein localization | 3.40E-03 |
| 79 | GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway | 3.40E-03 |
| 80 | GO:0010161: red light signaling pathway | 3.40E-03 |
| 81 | GO:0009610: response to symbiotic fungus | 3.40E-03 |
| 82 | GO:0006955: immune response | 3.40E-03 |
| 83 | GO:0010050: vegetative phase change | 3.40E-03 |
| 84 | GO:0006821: chloride transport | 3.40E-03 |
| 85 | GO:0030162: regulation of proteolysis | 3.94E-03 |
| 86 | GO:0001522: pseudouridine synthesis | 3.94E-03 |
| 87 | GO:0006353: DNA-templated transcription, termination | 3.94E-03 |
| 88 | GO:0070413: trehalose metabolism in response to stress | 3.94E-03 |
| 89 | GO:0009850: auxin metabolic process | 3.94E-03 |
| 90 | GO:0009704: de-etiolation | 3.94E-03 |
| 91 | GO:0040008: regulation of growth | 4.02E-03 |
| 92 | GO:0016310: phosphorylation | 4.34E-03 |
| 93 | GO:0010099: regulation of photomorphogenesis | 4.51E-03 |
| 94 | GO:0009827: plant-type cell wall modification | 4.51E-03 |
| 95 | GO:0010497: plasmodesmata-mediated intercellular transport | 4.51E-03 |
| 96 | GO:0010052: guard cell differentiation | 4.51E-03 |
| 97 | GO:0010100: negative regulation of photomorphogenesis | 4.51E-03 |
| 98 | GO:0006526: arginine biosynthetic process | 4.51E-03 |
| 99 | GO:0007389: pattern specification process | 4.51E-03 |
| 100 | GO:0000902: cell morphogenesis | 5.11E-03 |
| 101 | GO:0009051: pentose-phosphate shunt, oxidative branch | 5.11E-03 |
| 102 | GO:2000024: regulation of leaf development | 5.11E-03 |
| 103 | GO:0006783: heme biosynthetic process | 5.11E-03 |
| 104 | GO:0009638: phototropism | 5.74E-03 |
| 105 | GO:0035999: tetrahydrofolate interconversion | 5.74E-03 |
| 106 | GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway | 5.74E-03 |
| 107 | GO:0009641: shade avoidance | 6.38E-03 |
| 108 | GO:0009299: mRNA transcription | 6.38E-03 |
| 109 | GO:0006535: cysteine biosynthetic process from serine | 6.38E-03 |
| 110 | GO:0030422: production of siRNA involved in RNA interference | 6.38E-03 |
| 111 | GO:0048829: root cap development | 6.38E-03 |
| 112 | GO:0006816: calcium ion transport | 7.06E-03 |
| 113 | GO:0009089: lysine biosynthetic process via diaminopimelate | 7.06E-03 |
| 114 | GO:0016024: CDP-diacylglycerol biosynthetic process | 7.76E-03 |
| 115 | GO:0030036: actin cytoskeleton organization | 8.48E-03 |
| 116 | GO:0009725: response to hormone | 8.48E-03 |
| 117 | GO:0009767: photosynthetic electron transport chain | 8.48E-03 |
| 118 | GO:2000012: regulation of auxin polar transport | 8.48E-03 |
| 119 | GO:0009785: blue light signaling pathway | 8.48E-03 |
| 120 | GO:0006006: glucose metabolic process | 8.48E-03 |
| 121 | GO:0010020: chloroplast fission | 9.23E-03 |
| 122 | GO:0010207: photosystem II assembly | 9.23E-03 |
| 123 | GO:0051603: proteolysis involved in cellular protein catabolic process | 9.69E-03 |
| 124 | GO:0080167: response to karrikin | 9.77E-03 |
| 125 | GO:0090351: seedling development | 1.00E-02 |
| 126 | GO:0010030: positive regulation of seed germination | 1.00E-02 |
| 127 | GO:0070588: calcium ion transmembrane transport | 1.00E-02 |
| 128 | GO:0006417: regulation of translation | 1.04E-02 |
| 129 | GO:0006071: glycerol metabolic process | 1.08E-02 |
| 130 | GO:0048367: shoot system development | 1.14E-02 |
| 131 | GO:0048316: seed development | 1.14E-02 |
| 132 | GO:0019344: cysteine biosynthetic process | 1.16E-02 |
| 133 | GO:0010187: negative regulation of seed germination | 1.16E-02 |
| 134 | GO:0051017: actin filament bundle assembly | 1.16E-02 |
| 135 | GO:0006825: copper ion transport | 1.24E-02 |
| 136 | GO:0009740: gibberellic acid mediated signaling pathway | 1.26E-02 |
| 137 | GO:0016998: cell wall macromolecule catabolic process | 1.33E-02 |
| 138 | GO:0009742: brassinosteroid mediated signaling pathway | 1.42E-02 |
| 139 | GO:0010227: floral organ abscission | 1.51E-02 |
| 140 | GO:0009686: gibberellin biosynthetic process | 1.51E-02 |
| 141 | GO:0010082: regulation of root meristem growth | 1.51E-02 |
| 142 | GO:0048364: root development | 1.69E-02 |
| 143 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 1.70E-02 |
| 144 | GO:0008284: positive regulation of cell proliferation | 1.70E-02 |
| 145 | GO:0042631: cellular response to water deprivation | 1.79E-02 |
| 146 | GO:0042335: cuticle development | 1.79E-02 |
| 147 | GO:0008033: tRNA processing | 1.79E-02 |
| 148 | GO:0016567: protein ubiquitination | 1.91E-02 |
| 149 | GO:0006508: proteolysis | 1.95E-02 |
| 150 | GO:0008654: phospholipid biosynthetic process | 2.09E-02 |
| 151 | GO:0031047: gene silencing by RNA | 2.30E-02 |
| 152 | GO:0071281: cellular response to iron ion | 2.41E-02 |
| 153 | GO:0010252: auxin homeostasis | 2.52E-02 |
| 154 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 2.59E-02 |
| 155 | GO:0007166: cell surface receptor signaling pathway | 2.65E-02 |
| 156 | GO:0008380: RNA splicing | 2.76E-02 |
| 157 | GO:0009735: response to cytokinin | 2.94E-02 |
| 158 | GO:0010029: regulation of seed germination | 2.97E-02 |
| 159 | GO:0009816: defense response to bacterium, incompatible interaction | 2.97E-02 |
| 160 | GO:0006974: cellular response to DNA damage stimulus | 3.09E-02 |
| 161 | GO:0015995: chlorophyll biosynthetic process | 3.20E-02 |
| 162 | GO:0010411: xyloglucan metabolic process | 3.20E-02 |
| 163 | GO:0009416: response to light stimulus | 3.29E-02 |
| 164 | GO:0000160: phosphorelay signal transduction system | 3.57E-02 |
| 165 | GO:0010311: lateral root formation | 3.57E-02 |
| 166 | GO:0048527: lateral root development | 3.82E-02 |
| 167 | GO:0009723: response to ethylene | 4.13E-02 |
| 168 | GO:0006839: mitochondrial transport | 4.47E-02 |
| 169 | GO:0006897: endocytosis | 4.61E-02 |
| 170 | GO:0006631: fatty acid metabolic process | 4.61E-02 |
| 171 | GO:0046777: protein autophosphorylation | 4.73E-02 |
| 172 | GO:0009926: auxin polar transport | 4.88E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0019136: deoxynucleoside kinase activity | 0.00E+00 |
| 2 | GO:0004056: argininosuccinate lyase activity | 0.00E+00 |
| 3 | GO:0004674: protein serine/threonine kinase activity | 1.77E-07 |
| 4 | GO:0016301: kinase activity | 1.20E-06 |
| 5 | GO:0033612: receptor serine/threonine kinase binding | 7.78E-05 |
| 6 | GO:0003727: single-stranded RNA binding | 1.16E-04 |
| 7 | GO:0043621: protein self-association | 1.23E-04 |
| 8 | GO:0042834: peptidoglycan binding | 2.22E-04 |
| 9 | GO:0004008: copper-exporting ATPase activity | 2.22E-04 |
| 10 | GO:0004088: carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity | 2.22E-04 |
| 11 | GO:0010313: phytochrome binding | 2.22E-04 |
| 12 | GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity | 2.22E-04 |
| 13 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 2.22E-04 |
| 14 | GO:0010285: L,L-diaminopimelate aminotransferase activity | 2.22E-04 |
| 15 | GO:0004805: trehalose-phosphatase activity | 4.05E-04 |
| 16 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 4.69E-04 |
| 17 | GO:0005524: ATP binding | 4.88E-04 |
| 18 | GO:0043425: bHLH transcription factor binding | 4.95E-04 |
| 19 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 4.95E-04 |
| 20 | GO:0035241: protein-arginine omega-N monomethyltransferase activity | 4.95E-04 |
| 21 | GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity | 4.95E-04 |
| 22 | GO:0050017: L-3-cyanoalanine synthase activity | 4.95E-04 |
| 23 | GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity | 4.95E-04 |
| 24 | GO:0008469: histone-arginine N-methyltransferase activity | 8.05E-04 |
| 25 | GO:0070330: aromatase activity | 8.05E-04 |
| 26 | GO:0032549: ribonucleoside binding | 8.05E-04 |
| 27 | GO:0035197: siRNA binding | 1.15E-03 |
| 28 | GO:0004672: protein kinase activity | 1.41E-03 |
| 29 | GO:0004845: uracil phosphoribosyltransferase activity | 1.53E-03 |
| 30 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 1.53E-03 |
| 31 | GO:0008409: 5'-3' exonuclease activity | 1.53E-03 |
| 32 | GO:0019199: transmembrane receptor protein kinase activity | 1.53E-03 |
| 33 | GO:0005253: anion channel activity | 1.53E-03 |
| 34 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.95E-03 |
| 35 | GO:0004372: glycine hydroxymethyltransferase activity | 1.95E-03 |
| 36 | GO:0018685: alkane 1-monooxygenase activity | 1.95E-03 |
| 37 | GO:0008519: ammonium transmembrane transporter activity | 2.40E-03 |
| 38 | GO:0005247: voltage-gated chloride channel activity | 2.40E-03 |
| 39 | GO:0004605: phosphatidate cytidylyltransferase activity | 2.40E-03 |
| 40 | GO:1990714: hydroxyproline O-galactosyltransferase activity | 2.40E-03 |
| 41 | GO:0051015: actin filament binding | 2.57E-03 |
| 42 | GO:0004124: cysteine synthase activity | 2.89E-03 |
| 43 | GO:0004849: uridine kinase activity | 2.89E-03 |
| 44 | GO:0030170: pyridoxal phosphate binding | 3.23E-03 |
| 45 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 3.90E-03 |
| 46 | GO:0005375: copper ion transmembrane transporter activity | 4.51E-03 |
| 47 | GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity | 4.51E-03 |
| 48 | GO:0008889: glycerophosphodiester phosphodiesterase activity | 5.11E-03 |
| 49 | GO:0009672: auxin:proton symporter activity | 5.74E-03 |
| 50 | GO:0005515: protein binding | 6.69E-03 |
| 51 | GO:0004185: serine-type carboxypeptidase activity | 6.93E-03 |
| 52 | GO:0001054: RNA polymerase I activity | 7.06E-03 |
| 53 | GO:0004521: endoribonuclease activity | 7.76E-03 |
| 54 | GO:0005262: calcium channel activity | 8.48E-03 |
| 55 | GO:0009982: pseudouridine synthase activity | 8.48E-03 |
| 56 | GO:0010329: auxin efflux transmembrane transporter activity | 8.48E-03 |
| 57 | GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | 8.48E-03 |
| 58 | GO:0008083: growth factor activity | 9.23E-03 |
| 59 | GO:0003690: double-stranded DNA binding | 9.69E-03 |
| 60 | GO:0003887: DNA-directed DNA polymerase activity | 1.08E-02 |
| 61 | GO:0005345: purine nucleobase transmembrane transporter activity | 1.24E-02 |
| 62 | GO:0004871: signal transducer activity | 1.30E-02 |
| 63 | GO:0042803: protein homodimerization activity | 1.30E-02 |
| 64 | GO:0004176: ATP-dependent peptidase activity | 1.33E-02 |
| 65 | GO:0008514: organic anion transmembrane transporter activity | 1.60E-02 |
| 66 | GO:0019843: rRNA binding | 1.67E-02 |
| 67 | GO:0004252: serine-type endopeptidase activity | 1.86E-02 |
| 68 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 2.19E-02 |
| 69 | GO:0000156: phosphorelay response regulator activity | 2.41E-02 |
| 70 | GO:0016759: cellulose synthase activity | 2.52E-02 |
| 71 | GO:0016791: phosphatase activity | 2.52E-02 |
| 72 | GO:0008483: transaminase activity | 2.63E-02 |
| 73 | GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity | 2.63E-02 |
| 74 | GO:0008237: metallopeptidase activity | 2.63E-02 |
| 75 | GO:0005200: structural constituent of cytoskeleton | 2.63E-02 |
| 76 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 3.20E-02 |
| 77 | GO:0008236: serine-type peptidase activity | 3.32E-02 |
| 78 | GO:0008168: methyltransferase activity | 3.45E-02 |
| 79 | GO:0015238: drug transmembrane transporter activity | 3.57E-02 |
| 80 | GO:0016788: hydrolase activity, acting on ester bonds | 3.65E-02 |
| 81 | GO:0004222: metalloendopeptidase activity | 3.70E-02 |
| 82 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 3.70E-02 |
| 83 | GO:0050661: NADP binding | 4.47E-02 |
| 84 | GO:0003723: RNA binding | 4.84E-02 |
| 85 | GO:0052689: carboxylic ester hydrolase activity | 4.88E-02 |