Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G04790

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1902458: positive regulation of stomatal opening0.00E+00
2GO:0043488: regulation of mRNA stability0.00E+00
3GO:0090706: specification of plant organ position0.00E+00
4GO:2000121: regulation of removal of superoxide radicals0.00E+00
5GO:0046460: neutral lipid biosynthetic process0.00E+00
6GO:0031054: pre-miRNA processing0.00E+00
7GO:0031116: positive regulation of microtubule polymerization0.00E+00
8GO:2001294: malonyl-CoA catabolic process0.00E+00
9GO:0045038: protein import into chloroplast thylakoid membrane3.31E-06
10GO:1903426: regulation of reactive oxygen species biosynthetic process1.01E-05
11GO:0009733: response to auxin1.20E-04
12GO:0006021: inositol biosynthetic process1.29E-04
13GO:1902183: regulation of shoot apical meristem development1.98E-04
14GO:0010158: abaxial cell fate specification1.98E-04
15GO:0006177: GMP biosynthetic process4.78E-04
16GO:0010450: inflorescence meristem growth4.78E-04
17GO:0051171: regulation of nitrogen compound metabolic process4.78E-04
18GO:0031426: polycistronic mRNA processing4.78E-04
19GO:0071028: nuclear mRNA surveillance4.78E-04
20GO:0043266: regulation of potassium ion transport4.78E-04
21GO:0006659: phosphatidylserine biosynthetic process4.78E-04
22GO:2000021: regulation of ion homeostasis4.78E-04
23GO:2000070: regulation of response to water deprivation6.01E-04
24GO:0040008: regulation of growth8.76E-04
25GO:2000024: regulation of leaf development8.76E-04
26GO:0031125: rRNA 3'-end processing1.03E-03
27GO:0015804: neutral amino acid transport1.03E-03
28GO:0071051: polyadenylation-dependent snoRNA 3'-end processing1.03E-03
29GO:0034475: U4 snRNA 3'-end processing1.03E-03
30GO:1900865: chloroplast RNA modification1.03E-03
31GO:0010115: regulation of abscisic acid biosynthetic process1.03E-03
32GO:1900871: chloroplast mRNA modification1.03E-03
33GO:0030187: melatonin biosynthetic process1.03E-03
34GO:0007154: cell communication1.03E-03
35GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation1.03E-03
36GO:1900033: negative regulation of trichome patterning1.03E-03
37GO:0006415: translational termination1.39E-03
38GO:0010027: thylakoid membrane organization1.49E-03
39GO:0006790: sulfur compound metabolic process1.59E-03
40GO:0016024: CDP-diacylglycerol biosynthetic process1.59E-03
41GO:0045165: cell fate commitment1.68E-03
42GO:0016075: rRNA catabolic process1.68E-03
43GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'1.68E-03
44GO:0009405: pathogenesis1.68E-03
45GO:0010589: leaf proximal/distal pattern formation1.68E-03
46GO:0006753: nucleoside phosphate metabolic process1.68E-03
47GO:0080055: low-affinity nitrate transport1.68E-03
48GO:0009150: purine ribonucleotide metabolic process1.68E-03
49GO:0051604: protein maturation1.68E-03
50GO:0001578: microtubule bundle formation1.68E-03
51GO:0045493: xylan catabolic process1.68E-03
52GO:0006166: purine ribonucleoside salvage2.44E-03
53GO:0010239: chloroplast mRNA processing2.44E-03
54GO:0006164: purine nucleotide biosynthetic process2.44E-03
55GO:0010255: glucose mediated signaling pathway2.44E-03
56GO:0046739: transport of virus in multicellular host2.44E-03
57GO:0006168: adenine salvage2.44E-03
58GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.44E-03
59GO:0042753: positive regulation of circadian rhythm2.55E-03
60GO:0009944: polarity specification of adaxial/abaxial axis2.82E-03
61GO:0009734: auxin-activated signaling pathway3.27E-03
62GO:0048629: trichome patterning3.28E-03
63GO:0051322: anaphase3.28E-03
64GO:0035279: mRNA cleavage involved in gene silencing by miRNA3.28E-03
65GO:0022622: root system development3.28E-03
66GO:0007020: microtubule nucleation3.28E-03
67GO:0008295: spermidine biosynthetic process3.28E-03
68GO:0032366: intracellular sterol transport3.28E-03
69GO:0044209: AMP salvage4.21E-03
70GO:0034052: positive regulation of plant-type hypersensitive response4.21E-03
71GO:0046785: microtubule polymerization4.21E-03
72GO:0009789: positive regulation of abscisic acid-activated signaling pathway4.83E-03
73GO:0010264: myo-inositol hexakisphosphate biosynthetic process5.21E-03
74GO:0016554: cytidine to uridine editing5.21E-03
75GO:0006655: phosphatidylglycerol biosynthetic process5.21E-03
76GO:0032973: amino acid export5.21E-03
77GO:0009117: nucleotide metabolic process5.21E-03
78GO:0000741: karyogamy5.21E-03
79GO:0046855: inositol phosphate dephosphorylation5.21E-03
80GO:0006561: proline biosynthetic process5.21E-03
81GO:0009958: positive gravitropism5.64E-03
82GO:0010154: fruit development5.64E-03
83GO:0010182: sugar mediated signaling pathway5.64E-03
84GO:0009585: red, far-red light phototransduction5.73E-03
85GO:0080086: stamen filament development6.28E-03
86GO:0009648: photoperiodism6.28E-03
87GO:0042372: phylloquinone biosynthetic process6.28E-03
88GO:0034389: lipid particle organization6.28E-03
89GO:0048280: vesicle fusion with Golgi apparatus6.28E-03
90GO:0030488: tRNA methylation6.28E-03
91GO:0009791: post-embryonic development6.51E-03
92GO:0032880: regulation of protein localization7.43E-03
93GO:0009395: phospholipid catabolic process7.43E-03
94GO:0048528: post-embryonic root development7.43E-03
95GO:0043090: amino acid import7.43E-03
96GO:0010196: nonphotochemical quenching7.43E-03
97GO:0015937: coenzyme A biosynthetic process7.43E-03
98GO:0035196: production of miRNAs involved in gene silencing by miRNA7.43E-03
99GO:0010583: response to cyclopentenone7.45E-03
100GO:0016032: viral process7.45E-03
101GO:0007155: cell adhesion8.65E-03
102GO:0043068: positive regulation of programmed cell death8.65E-03
103GO:0046620: regulation of organ growth8.65E-03
104GO:0010078: maintenance of root meristem identity8.65E-03
105GO:0009704: de-etiolation8.65E-03
106GO:0010093: specification of floral organ identity9.94E-03
107GO:0015996: chlorophyll catabolic process9.94E-03
108GO:0007186: G-protein coupled receptor signaling pathway9.94E-03
109GO:0006997: nucleus organization9.94E-03
110GO:0032544: plastid translation9.94E-03
111GO:0043562: cellular response to nitrogen levels9.94E-03
112GO:0016126: sterol biosynthetic process1.01E-02
113GO:0009627: systemic acquired resistance1.13E-02
114GO:0080144: amino acid homeostasis1.13E-02
115GO:0019432: triglyceride biosynthetic process1.13E-02
116GO:0048507: meristem development1.13E-02
117GO:0006189: 'de novo' IMP biosynthetic process1.13E-02
118GO:0071577: zinc II ion transmembrane transport1.27E-02
119GO:0009638: phototropism1.27E-02
120GO:0000387: spliceosomal snRNP assembly1.27E-02
121GO:0010267: production of ta-siRNAs involved in RNA interference1.27E-02
122GO:0042761: very long-chain fatty acid biosynthetic process1.27E-02
123GO:0010018: far-red light signaling pathway1.27E-02
124GO:0010380: regulation of chlorophyll biosynthetic process1.27E-02
125GO:0009299: mRNA transcription1.42E-02
126GO:0006896: Golgi to vacuole transport1.42E-02
127GO:0009688: abscisic acid biosynthetic process1.42E-02
128GO:0045036: protein targeting to chloroplast1.42E-02
129GO:0006811: ion transport1.46E-02
130GO:0048527: lateral root development1.53E-02
131GO:0009684: indoleacetic acid biosynthetic process1.57E-02
132GO:1903507: negative regulation of nucleic acid-templated transcription1.57E-02
133GO:0009750: response to fructose1.57E-02
134GO:0045037: protein import into chloroplast stroma1.73E-02
135GO:0045490: pectin catabolic process1.81E-02
136GO:0009725: response to hormone1.90E-02
137GO:0009767: photosynthetic electron transport chain1.90E-02
138GO:0010588: cotyledon vascular tissue pattern formation1.90E-02
139GO:2000012: regulation of auxin polar transport1.90E-02
140GO:0016042: lipid catabolic process1.96E-02
141GO:0071555: cell wall organization2.02E-02
142GO:0048467: gynoecium development2.07E-02
143GO:0010143: cutin biosynthetic process2.07E-02
144GO:0006541: glutamine metabolic process2.07E-02
145GO:0010207: photosystem II assembly2.07E-02
146GO:0009933: meristem structural organization2.07E-02
147GO:0007166: cell surface receptor signaling pathway2.14E-02
148GO:0019853: L-ascorbic acid biosynthetic process2.24E-02
149GO:0090351: seedling development2.24E-02
150GO:0010030: positive regulation of seed germination2.24E-02
151GO:0046854: phosphatidylinositol phosphorylation2.24E-02
152GO:0006071: glycerol metabolic process2.42E-02
153GO:0000162: tryptophan biosynthetic process2.42E-02
154GO:0010025: wax biosynthetic process2.42E-02
155GO:0009833: plant-type primary cell wall biogenesis2.42E-02
156GO:0000027: ribosomal large subunit assembly2.61E-02
157GO:0030150: protein import into mitochondrial matrix2.61E-02
158GO:0007010: cytoskeleton organization2.61E-02
159GO:0010187: negative regulation of seed germination2.61E-02
160GO:0043622: cortical microtubule organization2.80E-02
161GO:0007017: microtubule-based process2.80E-02
162GO:0048511: rhythmic process2.99E-02
163GO:0003333: amino acid transmembrane transport2.99E-02
164GO:0009658: chloroplast organization3.13E-02
165GO:0009814: defense response, incompatible interaction3.19E-02
166GO:2000022: regulation of jasmonic acid mediated signaling pathway3.19E-02
167GO:0035428: hexose transmembrane transport3.19E-02
168GO:0031348: negative regulation of defense response3.19E-02
169GO:0048367: shoot system development3.58E-02
170GO:0010214: seed coat development3.60E-02
171GO:0019722: calcium-mediated signaling3.60E-02
172GO:0009306: protein secretion3.60E-02
173GO:0042147: retrograde transport, endosome to Golgi3.82E-02
174GO:0008284: positive regulation of cell proliferation3.82E-02
175GO:0009740: gibberellic acid mediated signaling pathway3.92E-02
176GO:0042631: cellular response to water deprivation4.03E-02
177GO:0000271: polysaccharide biosynthetic process4.03E-02
178GO:0080022: primary root development4.03E-02
179GO:0010087: phloem or xylem histogenesis4.03E-02
180GO:0045489: pectin biosynthetic process4.25E-02
181GO:0010305: leaf vascular tissue pattern formation4.25E-02
182GO:0010197: polar nucleus fusion4.25E-02
183GO:0046323: glucose import4.25E-02
184GO:0006396: RNA processing4.29E-02
185GO:0005975: carbohydrate metabolic process4.38E-02
186GO:0007018: microtubule-based movement4.48E-02
187GO:0009851: auxin biosynthetic process4.71E-02
188GO:0006623: protein targeting to vacuole4.71E-02
189GO:0048825: cotyledon development4.71E-02
190GO:0008654: phospholipid biosynthetic process4.71E-02
191GO:0048510: regulation of timing of transition from vegetative to reproductive phase4.94E-02
192GO:0006891: intra-Golgi vesicle-mediated transport4.94E-02
RankGO TermAdjusted P value
1GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity0.00E+00
2GO:0004059: aralkylamine N-acetyltransferase activity0.00E+00
3GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
4GO:0010301: xanthoxin dehydrogenase activity0.00E+00
5GO:0050613: delta14-sterol reductase activity0.00E+00
6GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity0.00E+00
7GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
8GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
9GO:1990534: thermospermine oxidase activity0.00E+00
10GO:0000293: ferric-chelate reductase activity2.80E-04
11GO:0030570: pectate lyase activity4.76E-04
12GO:0010347: L-galactose-1-phosphate phosphatase activity4.78E-04
13GO:0050139: nicotinate-N-glucosyltransferase activity4.78E-04
14GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity4.78E-04
15GO:0010945: CoA pyrophosphatase activity4.78E-04
16GO:0016788: hydrolase activity, acting on ester bonds5.15E-04
17GO:0003747: translation release factor activity8.76E-04
18GO:0043425: bHLH transcription factor binding1.03E-03
19GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity1.03E-03
20GO:0009977: proton motive force dependent protein transmembrane transporter activity1.03E-03
21GO:0003938: IMP dehydrogenase activity1.03E-03
22GO:0004766: spermidine synthase activity1.03E-03
23GO:0052832: inositol monophosphate 3-phosphatase activity1.03E-03
24GO:0080097: L-tryptophan:pyruvate aminotransferase activity1.03E-03
25GO:0008934: inositol monophosphate 1-phosphatase activity1.03E-03
26GO:0052833: inositol monophosphate 4-phosphatase activity1.03E-03
27GO:0015929: hexosaminidase activity1.03E-03
28GO:0004563: beta-N-acetylhexosaminidase activity1.03E-03
29GO:0004512: inositol-3-phosphate synthase activity1.03E-03
30GO:0015172: acidic amino acid transmembrane transporter activity1.03E-03
31GO:0017118: lipoyltransferase activity1.03E-03
32GO:0004049: anthranilate synthase activity1.68E-03
33GO:0052692: raffinose alpha-galactosidase activity1.68E-03
34GO:0080054: low-affinity nitrate transmembrane transporter activity1.68E-03
35GO:0004557: alpha-galactosidase activity1.68E-03
36GO:0004022: alcohol dehydrogenase (NAD) activity1.80E-03
37GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.04E-03
38GO:0035198: miRNA binding2.44E-03
39GO:0000254: C-4 methylsterol oxidase activity2.44E-03
40GO:0015175: neutral amino acid transmembrane transporter activity2.44E-03
41GO:0048027: mRNA 5'-UTR binding2.44E-03
42GO:0035529: NADH pyrophosphatase activity2.44E-03
43GO:0003999: adenine phosphoribosyltransferase activity2.44E-03
44GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity2.44E-03
45GO:0016149: translation release factor activity, codon specific2.44E-03
46GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.44E-03
47GO:0047627: adenylylsulfatase activity2.44E-03
48GO:0016829: lyase activity2.91E-03
49GO:0003993: acid phosphatase activity2.99E-03
50GO:0080032: methyl jasmonate esterase activity3.28E-03
51GO:0009044: xylan 1,4-beta-xylosidase activity3.28E-03
52GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity3.28E-03
53GO:0046556: alpha-L-arabinofuranosidase activity3.28E-03
54GO:0052689: carboxylic ester hydrolase activity3.58E-03
55GO:0016846: carbon-sulfur lyase activity4.21E-03
56GO:0004040: amidase activity4.21E-03
57GO:0008017: microtubule binding4.53E-03
58GO:0000210: NAD+ diphosphatase activity5.21E-03
59GO:0016208: AMP binding5.21E-03
60GO:0004366: glycerol-3-phosphate O-acyltransferase activity5.21E-03
61GO:0016462: pyrophosphatase activity5.21E-03
62GO:0042578: phosphoric ester hydrolase activity5.21E-03
63GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity5.21E-03
64GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity6.28E-03
65GO:0016832: aldehyde-lyase activity6.28E-03
66GO:0003730: mRNA 3'-UTR binding6.28E-03
67GO:0004144: diacylglycerol O-acyltransferase activity6.28E-03
68GO:0009927: histidine phosphotransfer kinase activity6.28E-03
69GO:0004723: calcium-dependent protein serine/threonine phosphatase activity6.28E-03
70GO:0003777: microtubule motor activity6.53E-03
71GO:0043022: ribosome binding8.65E-03
72GO:0016746: transferase activity, transferring acyl groups9.34E-03
73GO:0008173: RNA methyltransferase activity9.94E-03
74GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.53E-02
75GO:0047372: acylglycerol lipase activity1.57E-02
76GO:0008794: arsenate reductase (glutaredoxin) activity1.57E-02
77GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.65E-02
78GO:0031072: heat shock protein binding1.90E-02
79GO:0000175: 3'-5'-exoribonuclease activity1.90E-02
80GO:0003725: double-stranded RNA binding1.90E-02
81GO:0015266: protein channel activity1.90E-02
82GO:0008081: phosphoric diester hydrolase activity1.90E-02
83GO:0008083: growth factor activity2.07E-02
84GO:0008131: primary amine oxidase activity2.07E-02
85GO:0008146: sulfotransferase activity2.24E-02
86GO:0005385: zinc ion transmembrane transporter activity2.61E-02
87GO:0005528: FK506 binding2.61E-02
88GO:0003714: transcription corepressor activity2.61E-02
89GO:0046872: metal ion binding2.65E-02
90GO:0051087: chaperone binding2.80E-02
91GO:0008324: cation transmembrane transporter activity2.80E-02
92GO:0008408: 3'-5' exonuclease activity2.99E-02
93GO:0019706: protein-cysteine S-palmitoyltransferase activity2.99E-02
94GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity3.19E-02
95GO:0015171: amino acid transmembrane transporter activity3.25E-02
96GO:0016491: oxidoreductase activity3.38E-02
97GO:0016760: cellulose synthase (UDP-forming) activity3.40E-02
98GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups3.58E-02
99GO:0008080: N-acetyltransferase activity4.25E-02
100GO:0001085: RNA polymerase II transcription factor binding4.25E-02
101GO:0005355: glucose transmembrane transporter activity4.48E-02
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Gene type



Gene DE type